mRNA_P-littoralis_Contig1384.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1384.7.1
Unique NamemRNA_P-littoralis_Contig1384.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A2D8LL55_9FLAO (Alpha-ketoglutarate-dependent dioxygenase AlkB n=3 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LL55_9FLAO)

HSP 1 Score: 318 bits (815), Expect = 1.500e-108
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKK 471
            MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEA+CNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKK
Sbjct:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAICNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKK 157          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A2U0I5H4_9FLAO (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Marixanthomonas spongiae TaxID=2174845 RepID=A0A2U0I5H4_9FLAO)

HSP 1 Score: 213 bits (542), Expect = 5.020e-67
Identity = 102/162 (62.96%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKKCVKIL 486
            MDLFS+E+H +   ++LP+AD+ Y+P F+S + A   F  L   TPWQ D IKIFGKT+ QPRL AL+G+ G SYSYS ITMH  P+T+++ +IK  VEAV  A FN+VLLNLYRDGQDSNGWHSDDEKELG+NP+IAS+SLGA+R FQL+HKKDK   K L
Sbjct:    1 MDLFSAEEHTDAILLKLPDADVVYHPGFLSRKSADAYFETLLNGTPWQQDHIKIFGKTHQQPRLRALYGEQGKSYSYSGITMHPLPFTSVLKEIKERVEAVSEAHFNVVLLNLYRDGQDSNGWHSDDEKELGENPMIASISLGAERVFQLKHKKDKTLKKSL 162          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A2S0HTA8_9FLAO (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Pukyongia salina TaxID=2094025 RepID=A0A2S0HTA8_9FLAO)

HSP 1 Score: 204 bits (519), Expect = 1.550e-63
Identity = 99/156 (63.46%), Postives = 124/156 (79.49%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDK 468
            M+LF+SED L N ++ L +AD+ Y+P F+S   AT+ F++L  +TPWQ D IK+FGK Y QPRLTAL+G+   SYSYS I M+  P+T L+L+IK+ VE V + KF  VLLNLYRDG DSNGWHSDDEKELGQ+PVIAS+SLGAKR+FQ+RHKKDK
Sbjct:    1 MELFNSEDLL-NTNLDLKDADVIYFPAFLSPSAATSYFKKLYADTPWQQDDIKLFGKVYPQPRLTALYGNNDRSYSYSGIVMNPMPFTPLLLEIKDKVEKVTDVKFTTVLLNLYRDGNDSNGWHSDDEKELGQDPVIASISLGAKRRFQMRHKKDK 155          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A370Q950_9FLAO (Alkylated DNA repair dioxygenase AlkB n=2 Tax=Marinirhabdus gelatinilytica TaxID=1703343 RepID=A0A370Q950_9FLAO)

HSP 1 Score: 204 bits (519), Expect = 2.270e-63
Identity = 100/157 (63.69%), Postives = 117/157 (74.52%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKK 471
            M LFSSE   + + + L NA + Y P F++ E A   F +L K+T WQ D IK++GKTY QPRLTAL+G+AG SYSYSNITMH  P+T  +L+IK  VE  C+A FNIVLLNLYR G DSNGWHSDDEKELG NP IASVSLG +RKFQLR K DKK
Sbjct:   13 MSLFSSEKFQKEEHLDLANATVHYIPRFLTTETADDYFYKLYKKTKWQQDDIKVYGKTYKQPRLTALYGEAGKSYSYSNITMHPAPFTPTLLEIKRKVEKTCHANFNIVLLNLYRYGSDSNGWHSDDEKELGPNPTIASVSLGEERKFQLRKKTDKK 169          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A661XUV6_9BACT (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XUV6_9BACT)

HSP 1 Score: 202 bits (513), Expect = 1.390e-62
Identity = 100/157 (63.69%), Postives = 120/157 (76.43%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKK 471
            ++LFSSE+      + L +A + YYPNFIS++ A+ +F++L KETPWQ D+IKIFGK Y QPRLTAL+G  G SYSYS ITM    +T L+ +IK   E   N KFN VLLNLYRDG DSNGWHSDDEKELG+NPVIAS+SLGAKR F L+HKKDKK
Sbjct:    4 LNLFSSEEDSSAIPLALKDATVIYYPNFISSKYASEVFQKLLKETPWQEDTIKIFGKEYKQPRLTALYGKEGKSYSYSGITMFPLAFTPLLYEIKTLTEKEVNIKFNTVLLNLYRDGNDSNGWHSDDEKELGENPVIASLSLGAKRYFHLKHKKDKK 160          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A167KA58_9FLAO (2OG-Fe(II) oxygenase n=1 Tax=Cochleicola gelatinilyticus TaxID=1763537 RepID=A0A167KA58_9FLAO)

HSP 1 Score: 201 bits (510), Expect = 3.590e-62
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDK 468
            M+LF SE++LE     LP+AD+ YYP+F S ++ATT F+ L+KET W+ D IK+FGKTY QPRLTAL+G    SYSYS ITM  TP+T  +L+IK  +E V   KFN VLLNLYRDG DSNGWHSDDE+ELG+NP IASVSLG +R F L+HK++K
Sbjct:    1 MNLFFSEENLEFIQPDLPDADVLYYPSFFSEKEATTYFKMLQKETVWRQDDIKLFGKTYPQPRLTALYGSDTKSYSYSGITMFPTPFTPTLLEIKTRIETVVEKKFNTVLLNLYRDGNDSNGWHSDDEQELGKNPCIASVSLGVERPFHLKHKQEK 156          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A2E2W9K5_9FLAO (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2W9K5_9FLAO)

HSP 1 Score: 200 bits (509), Expect = 5.090e-62
Identity = 98/156 (62.82%), Postives = 119/156 (76.28%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDK 468
            MDLFSS    + Q I LPNADI+Y P+F+S  +A   F   ++ET WQ D+I +FGKTY QPRLTAL+G    SY+YSNITMH +P+T  +L+IKN +E V    FN+VLLNLYRDG DSNGWHSDDEKELG+NPVIAS+SLGA R FQLR+K +K
Sbjct:    1 MDLFSSSKFQKEQHIHLPNADISYIPDFLSVREAEHYFTIFQQETKWQQDTITVFGKTYKQPRLTALYGAKNKSYTYSNITMHPSPFTPALLEIKNKIEEVHQTIFNVVLLNLYRDGSDSNGWHSDDEKELGKNPVIASLSLGATRIFQLRNKTNK 156          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: A0A6H9L7W4_FLASP (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A6H9L7W4_FLASP)

HSP 1 Score: 200 bits (509), Expect = 5.090e-62
Identity = 99/156 (63.46%), Postives = 120/156 (76.92%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDK 468
            M+LF+SEDHL   ++ L +AD+ YYP+ IS+E AT+ F +L ++T WQ D IK+FGK Y QPRLTAL+ D    YSYS I MH  P++ L+ +IK  VE +   KF  VLLNLYRDG DSNGWHSDDEKELGQ+PVIASVSLGAKR+FQLRHKKDK
Sbjct:    1 MELFNSEDHLST-NLHLKDADVRYYPSLISSELATSYFDKLYEDTIWQQDEIKLFGKVYPQPRLTALYADNRRPYSYSGIIMHPLPFSPLLHEIKRKVEIISEIKFTTVLLNLYRDGNDSNGWHSDDEKELGQDPVIASVSLGAKRRFQLRHKKDK 155          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: UPI0019395379 (alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Luteirhabdus pelagi TaxID=2792783 RepID=UPI0019395379)

HSP 1 Score: 196 bits (498), Expect = 2.150e-60
Identity = 97/156 (62.18%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDK 468
            M LFS E     Q + LP+A+I YYPNF+S  +A   F  L KETPWQ D+I +FGKTY QPRLTAL+G+AG  Y+YS ITMH  P+T  +L +K  VE V  A F  +LLNLYRDG DSNGWH+DDEKELG+NP+IASVSLGA R F L+HKKDK
Sbjct:    1 MHLFSEE----KQPLSLPDAEIVYYPNFLSTAEADRYFDILLKETPWQQDNITVFGKTYPQPRLTALYGEAGKPYTYSGITMHPHPFTEPLLGLKKKVEDVVEAHFTTLLLNLYRDGNDSNGWHADDEKELGKNPIIASVSLGASRSFHLKHKKDK 152          
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Match: UPI0015CDE3AA (alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Winogradskyella ursingii TaxID=2686079 RepID=UPI0015CDE3AA)

HSP 1 Score: 190 bits (483), Expect = 3.920e-58
Identity = 96/167 (57.49%), Postives = 118/167 (70.66%), Query Frame = 1
Query:    1 MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHDSIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEAVCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQLRHKKDKKCVKILNSNTG 501
            M+LFS +     QSI+LPNA++ Y P+F S  +A   F  L+ +T WQ D IK+FGKTY QPRLTALFG+   +YSYSNI MH  P+T  +  IKN VE + N++FN VLLNLYRDG DSNGWH+D+EKELG+NPVIASVS G KR F  +HK  K+    LN N G
Sbjct:    1 MNLFSGD----KQSIELPNAELIYVPDFFSEAEANNYFETLKSKTSWQQDDIKVFGKTYKQPRLTALFGEGDQAYSYSNIVMHPEPFTKELKVIKNKVERISNSEFNTVLLNLYRDGNDSNGWHADNEKELGKNPVIASVSFGEKRPFHFKHKTLKEQRHKLNLNHG 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1384.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LL55_9FLAO1.500e-10899.36Alpha-ketoglutarate-dependent dioxygenase AlkB n=3... [more]
A0A2U0I5H4_9FLAO5.020e-6762.96Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A2S0HTA8_9FLAO1.550e-6363.46Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A370Q950_9FLAO2.270e-6363.69Alkylated DNA repair dioxygenase AlkB n=2 Tax=Mari... [more]
A0A661XUV6_9BACT1.390e-6263.69Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A167KA58_9FLAO3.590e-6262.182OG-Fe(II) oxygenase n=1 Tax=Cochleicola gelatinil... [more]
A0A2E2W9K5_9FLAO5.090e-6262.82Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A6H9L7W4_FLASP5.090e-6263.46Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
UPI00193953792.150e-6062.18alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
UPI0015CDE3AA3.920e-5857.49alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1384contigP-littoralis_Contig1384:22194..22800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121889.AUDM01000008_gene857
Preferred namealkB
PFAMs2OG-FeII_Oxy_2
Model size607
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.08e-59
EggNOG OGsCOG3145@1|root,COG3145@2|Bacteria,4NFEG@976|Bacteroidetes,1HWRD@117743|Flavobacteriia,2NSMD@237|Flavobacterium
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-28_001310.1
Description2OG-Fe(II) oxygenase
Cds size516
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.7005656-CDS-P-littoralis_Contig1384:22193..227091680789639.7005656-CDS-P-littoralis_Contig1384:22193..22709Pylaiella littoralis U1_48CDSP-littoralis_Contig1384 22194..22709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.7141147-UTR-P-littoralis_Contig1384:22709..228001680789639.7141147-UTR-P-littoralis_Contig1384:22709..22800Pylaiella littoralis U1_48UTRP-littoralis_Contig1384 22710..22800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1384.7.1prot_P-littoralis_Contig1384.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1384 22194..22709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1384.7.1

>prot_P-littoralis_Contig1384.7.1 ID=prot_P-littoralis_Contig1384.7.1|Name=mRNA_P-littoralis_Contig1384.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MDLFSSEDHLENQSIQLPNADITYYPNFISAEKATTLFRRLEKETPWQHD
SIKIFGKTYMQPRLTALFGDAGTSYSYSNITMHATPYTTLVLDIKNTVEA
VCNAKFNIVLLNLYRDGQDSNGWHSDDEKELGQNPVIASVSLGAKRKFQL
RHKKDKKCVKILNSNTGVCFS*
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mRNA from alignment at P-littoralis_Contig1384:22194..22800+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1384.7.1 ID=mRNA_P-littoralis_Contig1384.7.1|Name=mRNA_P-littoralis_Contig1384.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=607bp|location=Sequence derived from alignment at P-littoralis_Contig1384:22194..22800+ (Pylaiella littoralis U1_48)
ATGGACCTATTTTCTTCAGAAGACCATCTCGAAAACCAATCGATACAACT GCCAAACGCGGATATTACTTATTATCCTAATTTTATCTCAGCTGAAAAAG CCACGACCCTTTTCCGTAGGTTAGAAAAAGAAACTCCTTGGCAGCATGAT AGCATTAAAATATTCGGAAAAACATATATGCAACCTAGACTAACCGCCTT ATTTGGCGATGCAGGAACATCGTATTCGTATTCAAATATTACCATGCACG CCACACCTTATACTACCTTGGTACTGGATATCAAGAATACAGTAGAAGCT GTTTGTAATGCCAAATTTAATATTGTTTTACTCAACTTATATCGCGATGG CCAAGACAGTAACGGTTGGCATAGTGACGACGAAAAAGAATTAGGCCAGA ATCCCGTGATTGCCTCAGTTAGCCTTGGAGCCAAAAGAAAATTTCAGTTG CGACATAAAAAAGATAAAAAATGCGTCAAAATATTGAACTCGAACACGGG AGTCTGCTTCTCATGAAAGGTAACACGCAGCACTTTTGGCAGCATCAGAT TCCGAAGACAAAAAGATAGTCGCACCTCGAATCAATCTCACCTTTCGGCT AGTACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1384:22194..22800+

>mRNA_P-littoralis_Contig1384.7.1 ID=mRNA_P-littoralis_Contig1384.7.1|Name=mRNA_P-littoralis_Contig1384.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig1384:22194..22800+ (Pylaiella littoralis U1_48)
ATGGACCTATTTTCTTCAGAAGACCATCTCGAAAACCAATCGATACAACT
GCCAAACGCGGATATTACTTATTATCCTAATTTTATCTCAGCTGAAAAAG
CCACGACCCTTTTCCGTAGGTTAGAAAAAGAAACTCCTTGGCAGCATGAT
AGCATTAAAATATTCGGAAAAACATATATGCAACCTAGACTAACCGCCTT
ATTTGGCGATGCAGGAACATCGTATTCGTATTCAAATATTACCATGCACG
CCACACCTTATACTACCTTGGTACTGGATATCAAGAATACAGTAGAAGCT
GTTTGTAATGCCAAATTTAATATTGTTTTACTCAACTTATATCGCGATGG
CCAAGACAGTAACGGTTGGCATAGTGACGACGAAAAAGAATTAGGCCAGA
ATCCCGTGATTGCCTCAGTTAGCCTTGGAGCCAAAAGAAAATTTCAGTTG
CGACATAAAAAAGATAAAAAATGCGTCAAAATATTGAACTCGAACACGGG
AGTCTGCTTCTCATGA
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