mRNA_P-littoralis_Contig1384.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1384.2.1
Unique NamemRNA_P-littoralis_Contig1384.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1384.2.1 vs. uniprot
Match: D7G2I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 8.910e-7
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   82 MESIPTKMDKADEHLDRLGSILRSLRAPPPDRELSSTAVPI 204
            MES+P+KM +AD+HLDRLGSILRSLRA P DR   S+A  +
Sbjct:    1 MESLPSKMQEADQHLDRLGSILRSLRARPSDRVFFSSAAQL 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1384.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2I5_ECTSI8.910e-765.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1384contigP-littoralis_Contig1384:9857..11372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size285
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.549901-CDS-P-littoralis_Contig1384:9857..100251680789639.549901-CDS-P-littoralis_Contig1384:9857..10025Pylaiella littoralis U1_48CDSP-littoralis_Contig1384 9858..10025 -
1680789639.5619862-CDS-P-littoralis_Contig1384:11258..113721680789639.5619862-CDS-P-littoralis_Contig1384:11258..11372Pylaiella littoralis U1_48CDSP-littoralis_Contig1384 11259..11372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1384.2.1prot_P-littoralis_Contig1384.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1384 9858..11372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1384.2.1

>prot_P-littoralis_Contig1384.2.1 ID=prot_P-littoralis_Contig1384.2.1|Name=mRNA_P-littoralis_Contig1384.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
AVVLEIGVRPQEGRRCHLLRVNTQPISMESIPTKMDKADEHLDRLGSILR
SLRAPPPDRELSSTAVPIDRPEARRQDRLRSSEDPQQQQQQQQH
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mRNA from alignment at P-littoralis_Contig1384:9857..11372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1384.2.1 ID=mRNA_P-littoralis_Contig1384.2.1|Name=mRNA_P-littoralis_Contig1384.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1516bp|location=Sequence derived from alignment at P-littoralis_Contig1384:9857..11372- (Pylaiella littoralis U1_48)
GCGGTTGTGCTTGAGATTGGAGTGAGACCGCAAGAGGGCAGAAGGTGCCA
CCTGTTGCGAGTAAACACACAGCCAATTTCGATGGAGTCCATCCCAACCA
AGATGGACAAAGCGGTGAGTATTAGATCACAGCAGTCTAGATGGAGGTGA
TGCTTCTGGTTCTCTTTGTCGAGGAGAAGGGGACTGAGATCGATATATAG
TTCTGTCATAAAGTATACACTTTCACGTGTTACCAGCTGGTGTTCCTAAA
GTCGCAGACGTATCGGGCACGGGTGACCCTTAAGATCGGTGAAAAGTTGG
TTCTACCATCTGCTTCCTTTAGCTGCTACTAGCAGCTGCTCGCAGCTGTC
GCACCCAACACCACGGGCCAGCTTGGCGAACGGGTTTTGGGTGGGAACAT
CAGAGCCCAAAGTATTCAGCAAGTATGATACCAGACATCACGAATTCTTC
ACAATCCTCACACACTCCACATCATCAGGAAGCCGGCAAGAAAGCTTTTA
CGTAGAGAAAACGGTACCCTCCAAACACTTTTGCAAAACCTGCAGCAGTA
CTACAGTTGTTGTGGTGCGTGGAGATGCCTCCACAGTCTTGCAACCCCAA
GTCCAAGAAGTATTTACAGTACACAACACGCGATTTTCTTGTTGTTCTCT
CGGCGAGAGACCACGCCGGAACAATTATCATGGGCCCCCTCCCTTCAGCG
CTGGCGTTATTCCAGTCGCAACCCAAGATGAAGACTTGTTTTATTTTACT
ACTGTATGATATGCGCACCATGCAGCGGCGAGTGTTGGCATGCACAGGTC
TGGTTCAACAGGTTCGCTTCTGAGACTACTTCAACACAAAATATTCGACG
ACTGCTGTACAGCACTCACGGCCACGGGCACCGAACTCCTGAAGTAGAGC
TGAAGCAGCAACTCATATCACTACAGTACAGTACGTAGTTTCCTTGGACG
ATAGAGATTTGGGGGCCCGTGACGGCAAAAAACGGCACAGCAGTGGAAGA
TGTTTGGTTCGGTCTCACAGGTGGGATTTTTGAGCCATACGGTCGACCTC
CGACATCACAGCCGCAGCAGCAAATCTGAGAGATCCAACATACCTTTACT
GACGCCATGCTGCATGCCGTACTCCACAGACGATAAGGTCGTTTCATTAG
CGCCCTCTCGTGCTCGCTATTCTTTTTAGATAGAAGATGAACGTGTTTCC
CCAACCCTATTATGGTTCCGTTTAGAATGACACAAAATTTGTATCCAACG
CTTCATGTACTCCCCATTGACCAGGACCCGCACGTGGATCGTCGGGGGAT
ATGATGTGATAACTGTACATGGAATTTTTTCCCCTCTGAACAACCAGGAT
GAGCACTTGGATCGTCTTGGGAGCATTCTCCGAAGCCTGCGAGCACCTCC
TCCCGATAGAGAGTTGTCGTCGACCGCTGTCCCAATCGACAGACCAGAAG
CACGCCGCCAGGACCGCCTGCGCAGTAGTGAAGATCCCCAACAGCAACAG
CAGCAACAGCAACATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1384:9857..11372-

>mRNA_P-littoralis_Contig1384.2.1 ID=mRNA_P-littoralis_Contig1384.2.1|Name=mRNA_P-littoralis_Contig1384.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1384:9857..11372- (Pylaiella littoralis U1_48)
GCGGTTGTGCTTGAGATTGGAGTGAGACCGCAAGAGGGCAGAAGGTGCCA
CCTGTTGCGAGTAAACACACAGCCAATTTCGATGGAGTCCATCCCAACCA
AGATGGACAAAGCGGATGAGCACTTGGATCGTCTTGGGAGCATTCTCCGA
AGCCTGCGAGCACCTCCTCCCGATAGAGAGTTGTCGTCGACCGCTGTCCC
AATCGACAGACCAGAAGCACGCCGCCAGGACCGCCTGCGCAGTAGTGAAG
ATCCCCAACAGCAACAGCAGCAACAGCAACAT
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