mRNA_P-littoralis_Contig1380.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1380.9.1
Unique NamemRNA_P-littoralis_Contig1380.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1380.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1380contigP-littoralis_Contig1380:20126..20863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size739
Hectar predicted targeting categoryother localisation
Exons1
Cds size714
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.307683-UTR-P-littoralis_Contig1380:20125..201491680789639.307683-UTR-P-littoralis_Contig1380:20125..20149Pylaiella littoralis U1_48UTRP-littoralis_Contig1380 20126..20149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.3182123-CDS-P-littoralis_Contig1380:20149..208631680789639.3182123-CDS-P-littoralis_Contig1380:20149..20863Pylaiella littoralis U1_48CDSP-littoralis_Contig1380 20150..20863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1380.9.1prot_P-littoralis_Contig1380.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1380 20150..20863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1380.9.1

>prot_P-littoralis_Contig1380.9.1 ID=prot_P-littoralis_Contig1380.9.1|Name=mRNA_P-littoralis_Contig1380.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MPGSDAARGGSEGANPDSDGIQELRLRVADTQSDIQQLKEMMKLMMANLG
GGGQQGEESGGSGGRVADNNSSGARRALLEEAAAGTGQSATAAARTTGGV
GAYQGSEWSQESQPAEDSGRRPAVPAGVGPITNTVERRGEAGDSYPTGIA
AAFESRSSHDKQHRVNPPVLRAEKGGFPLFKHEFLLKANHLDISQHFVGE
GTRAVPVGDPAKRKDDLLREGFTAGEIREARLAWTFLD
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mRNA from alignment at P-littoralis_Contig1380:20126..20863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1380.9.1 ID=mRNA_P-littoralis_Contig1380.9.1|Name=mRNA_P-littoralis_Contig1380.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig1380:20126..20863+ (Pylaiella littoralis U1_48)
TCCTTCGAAGGAGCTTCGGTCAACATGCCGGGTAGTGACGCTGCCAGGGG
CGGCTCAGAAGGAGCAAACCCCGACAGCGACGGAATACAGGAACTGCGAC
TGAGAGTTGCAGACACACAGAGTGATATTCAGCAGCTAAAAGAGATGATG
AAGCTGATGATGGCCAACCTAGGAGGGGGAGGTCAACAAGGAGAGGAGTC
AGGCGGCTCCGGCGGGAGAGTCGCCGACAACAACAGCAGCGGCGCCAGGA
GGGCGCTGCTGGAGGAGGCAGCAGCGGGCACTGGTCAAAGTGCTACTGCA
GCCGCAAGAACAACAGGCGGAGTTGGGGCATACCAGGGGAGCGAGTGGTC
CCAGGAGTCACAACCTGCTGAAGATTCGGGCAGGAGGCCGGCGGTTCCCG
CCGGCGTGGGCCCAATCACCAACACGGTGGAGCGACGCGGCGAAGCGGGG
GATTCATATCCCACAGGTATAGCCGCAGCTTTTGAGAGTAGGAGTAGCCA
TGACAAGCAACATCGAGTGAACCCACCTGTACTGAGAGCTGAGAAGGGAG
GCTTTCCACTATTCAAGCATGAATTCCTCCTCAAGGCGAATCACTTAGAT
ATATCACAGCACTTCGTGGGAGAGGGGACGCGTGCGGTTCCAGTAGGAGA
CCCGGCCAAACGCAAGGATGACCTGTTGAGAGAGGGTTTCACGGCGGGAG
AGATAAGAGAGGCCCGTCTTGCATGGACTTTTCTGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1380:20126..20863+

>mRNA_P-littoralis_Contig1380.9.1 ID=mRNA_P-littoralis_Contig1380.9.1|Name=mRNA_P-littoralis_Contig1380.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig1380:20126..20863+ (Pylaiella littoralis U1_48)
ATGCCGGGTAGTGACGCTGCCAGGGGCGGCTCAGAAGGAGCAAACCCCGA
CAGCGACGGAATACAGGAACTGCGACTGAGAGTTGCAGACACACAGAGTG
ATATTCAGCAGCTAAAAGAGATGATGAAGCTGATGATGGCCAACCTAGGA
GGGGGAGGTCAACAAGGAGAGGAGTCAGGCGGCTCCGGCGGGAGAGTCGC
CGACAACAACAGCAGCGGCGCCAGGAGGGCGCTGCTGGAGGAGGCAGCAG
CGGGCACTGGTCAAAGTGCTACTGCAGCCGCAAGAACAACAGGCGGAGTT
GGGGCATACCAGGGGAGCGAGTGGTCCCAGGAGTCACAACCTGCTGAAGA
TTCGGGCAGGAGGCCGGCGGTTCCCGCCGGCGTGGGCCCAATCACCAACA
CGGTGGAGCGACGCGGCGAAGCGGGGGATTCATATCCCACAGGTATAGCC
GCAGCTTTTGAGAGTAGGAGTAGCCATGACAAGCAACATCGAGTGAACCC
ACCTGTACTGAGAGCTGAGAAGGGAGGCTTTCCACTATTCAAGCATGAAT
TCCTCCTCAAGGCGAATCACTTAGATATATCACAGCACTTCGTGGGAGAG
GGGACGCGTGCGGTTCCAGTAGGAGACCCGGCCAAACGCAAGGATGACCT
GTTGAGAGAGGGTTTCACGGCGGGAGAGATAAGAGAGGCCCGTCTTGCAT
GGACTTTTCTGGAC
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