mRNA_P-littoralis_Contig138.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.105.1
Unique NamemRNA_P-littoralis_Contig138.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.390e-9
Identity = 42/100 (42.00%), Postives = 52/100 (52.00%), Query Frame = 3 
Query:  384 EAVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQD 683
            EA+N L HRV  +Y KAH   TR +L    L+G D L  DFLA+        G L             E V  K  RKAR W RL+NGG+ + NA+AFQ+
Sbjct:   33 EAINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQE 112
[Close]
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Match: A0A6H5KBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-8
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 3 
Query:  384 EAVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQD 683
            EA+N L HRV  +Y KAH   TR +L    L+G   L  DFLA+                    + S E V  K  RKAR W RL+NGG+ + NA+AFQ+
Sbjct:   81 EAINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEARLHEDFLAQ--------------------IGSLESVVCKCTRKARAWGRLSNGGYSSTNAKAFQE 160
[Close]
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.230e-8
Identity = 41/100 (41.00%), Postives = 52/100 (52.00%), Query Frame = 3 
Query:  384 EAVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQD 683
            +A+N L HRV  +Y KAH   TR +L    L+G D L  DFLA+        G L             E V  K  RKAR W RL+NGG+ + NA+AFQ+
Sbjct:    3 QAINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQE 82
[Close]
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 42/100 (42.00%), Postives = 52/100 (52.00%), Query Frame = 3 
Query:  384 EAVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQD 683
            EA+N L HRV  +Y KAH   TR +L    L+G D L  DFLA+        G L             E V  K  RKAR W RL+NGG+ + NA+AFQ+
Sbjct:  238 EAINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQE 317
[Close]
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Match: A0A6H5JUE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.330e-6
Identity = 40/98 (40.82%), Postives = 49/98 (50.00%), Query Frame = 3 
Query:  387 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQ 680
            A+N L HRV  +Y KAH   TR +L    L+G D L  D LA+        G L             E V  K  RKAR W RL+NGG+ + NA+AFQ
Sbjct:  173 AINTLLHRVMWRYTKAHMQSTREDLFEWQLVGEDRLHEDSLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4A1_9PHAE4.390e-942.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBL7_9PHAE1.310e-840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE3.230e-841.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE4.500e-842.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE1_9PHAE7.330e-640.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:493909..499406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1736
Hectar predicted targeting categoryother localisation
Exons6
Cds size366
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.105.1prot_P-littoralis_Contig138.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 497814..498179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.0325696-UTR-P-littoralis_Contig138:493908..4941681680789639.0325696-UTR-P-littoralis_Contig138:493908..494168Pylaiella littoralis U1_48UTRP-littoralis_Contig138 493909..494168 +
1680789639.0420558-UTR-P-littoralis_Contig138:494906..4950321680789639.0420558-UTR-P-littoralis_Contig138:494906..495032Pylaiella littoralis U1_48UTRP-littoralis_Contig138 494907..495032 +
1680789639.0508385-UTR-P-littoralis_Contig138:497474..4976031680789639.0508385-UTR-P-littoralis_Contig138:497474..497603Pylaiella littoralis U1_48UTRP-littoralis_Contig138 497475..497603 +
1680789639.0591946-UTR-P-littoralis_Contig138:497798..4978131680789639.0591946-UTR-P-littoralis_Contig138:497798..497813Pylaiella littoralis U1_48UTRP-littoralis_Contig138 497799..497813 +
1680789639.0819166-UTR-P-littoralis_Contig138:498179..4985211680789639.0819166-UTR-P-littoralis_Contig138:498179..498521Pylaiella littoralis U1_48UTRP-littoralis_Contig138 498180..498521 +
1680789639.0908432-UTR-P-littoralis_Contig138:498561..4988021680789639.0908432-UTR-P-littoralis_Contig138:498561..498802Pylaiella littoralis U1_48UTRP-littoralis_Contig138 498562..498802 +
1680789639.0993576-UTR-P-littoralis_Contig138:499149..4994061680789639.0993576-UTR-P-littoralis_Contig138:499149..499406Pylaiella littoralis U1_48UTRP-littoralis_Contig138 499150..499406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.0731628-CDS-P-littoralis_Contig138:497813..4981791680789639.0731628-CDS-P-littoralis_Contig138:497813..498179Pylaiella littoralis U1_48CDSP-littoralis_Contig138 497814..498179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.105.1

>prot_P-littoralis_Contig138.105.1 ID=prot_P-littoralis_Contig138.105.1|Name=mRNA_P-littoralis_Contig138.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MFSGLLDIEHTKEGEVMSHEDVASKAGRKAREWARLTNGGFVTRNARAFQ
DKSDPRPDGKTQCLATQVDVPIVPLLRHTRLRQASDFFLGISRAHMTTFV
FSAICISDCSSKPTRFLISTI*
back to top

mRNA from alignment at P-littoralis_Contig138:493909..499406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.105.1 ID=mRNA_P-littoralis_Contig138.105.1|Name=mRNA_P-littoralis_Contig138.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5498bp|location=Sequence derived from alignment at P-littoralis_Contig138:493909..499406+ (Pylaiella littoralis U1_48)
GCTGGGTTTCGCCACAGGTCGCCGGACCCGAAGGCGTGAACCCCTAGACC
CCGCGGCAGCGGGGCTATCTCGGAAAGACTTTCGTCGCTGACGCAGCTCA
CGGGGGAAGGCGGCACGCGCGCGCTGAGAGAAGCGACCCTTTTCGTGCTG
ATTTGAGAGCAGAGCGAGTTCTCCCGCTGCTCTGTGAGCGCTCGAGATCT
AAAGAGGCAATTTATCGTGAAATTAGTTACCTCTATACTTCGGAGTAAAA
TAAAAAAAAGGTCAGGATTTAGATGATGGGTAAGTGCGCTATTTGGCGCC
TACTACTGTACTGCTGCTGTATTGCCGAGATGTTGGTCTCCACAGATATA
ATATAACTTGTGGTATTTCATCGTATATCATGTATACCGCACGCACGTCA
CATTCGACGACCACCACCCACCGCCGCGGAATTTATTTATTTCGGGACAG
CCCATCCATTCCCCGTTGTACATCCATGTGCACACATATGTTTCTGCGTC
GCATCACCACAATTTTTTACCCGGGTTCCCTCAGTTTAAATAGTGTTCGG
CGATGCGTCATACTTCGAAGTACTTGATGAGCTGCATCCGCCCAGGATTG
ACACGCATGTATTTCGTGTCGCCGATGTTCTCATATCATGTGGTGCATCA
TAAACGAACGAAACGACGTGATGTGTAGGAATTTTCTCCGAAATAAAAAT
GCCGCCGCAGGCTTTGGAACTCTCTACACTTTTTTTTCTTCCAACAGTGT
TCAGCAGACGCGTCGAGTCGCACTCGGTCGGACTGATGTATCTACTTCCA
ACCTTCAGTCGCCCAACTCTGATGGCAGCCACCACGAGGCGACTGCTGTG
CATGCCACAGAGAGCACACTCCCTCTAAAGGCCGGTTTTGGTGGCTGCAC
CAAAGCCAGCCGCGGGGAGGATAGCTCGCCGATGCCGCGATTTTTTCCCC
AAAGAATTTTGCCAGAACGAAGCGCAGACCCTCGTTGGCGTGACACAGGA
AGAGAAAAGGAGAGAGAGCGAGGACTTGAGAGAGACAGAGAGAGAGGGAA
AGAGCCTTGATCAGGACGGGAGGAGAGCAAGGGATCCTGGCTGACACGCG
ACACGTACTCACCAGCGGTGAGAGGTGAGACTCCTGTGTGATGGATATTC
ATCCACCCTCGTTTGTGGGCCTTCGCATTCTCATGACATGGTCAGTCATT
CTCTTGACGGCACCGTGCCAGTAATCATAATCATGTAGAGGGCAAGGGAA
GCTCCGTATCTGCTCCTTTATGTAGTGTCCATACAGGGCGTGTGTTATTT
GATGTGTGTGCATGTCAACGGACCGCTTCCTTCGTAATGCTGTATCATAT
GCAGTCTCTATCATGTGCGTTGTACTTTTTTTTTTCGTGTCCAACGAATT
CGTATTTGCGAACGGCAAAAAATCGCTACGGGGGATAACACCCACCCCAT
GGGCGTTTTTTATTTTTTGCCGAAGTCCGACACCATGCACCCGTGCAACC
CGCAGCGAAACAGTCGAACACTATTCTTTGTAATAGCTTTTTTGCGAGCG
TTTAGCGAGCTTTTTGTTTTTCAAAAAAGCTGTTTAGATACCCCCCCCCC
CAGCCTCGCACCCACATCATGATCACACACGCAAAAAATAGACAAATATT
TATGCACGAGCAGCGAGGCTGTCCGTCCGTCCGTGTGTGTGTCTGTCTGA
CGTCGTTTTTTCGGCCACCTTTTTGTTGAAAACGACACGAATACCGAACA
GCTTCACGAATCCTTGGGTGTGGCCGACAGGGCTAACTTAGCCCGAGCTC
TCCCAGCTGCTTCCTGCTCATCACGTGCCGAGTCCATCGAGATAGCAGCG
GTGATGTGTGTTTTGTTTCTTCGCCAAAATTCGCCCTTTTCCCGGATTCC
CGGATTAATGAAGGGAGGCATTTGTGTCAGGTACTCTGCAGCGAGCACAT
CATCACCCACATCTCACACACAACAGCCGCTTAGCTACTGCTGTATACTG
GTGTATTGCTAAGAGAGAGGCAGGGAGTAAGAGATGGTGCTGCTGCTGAT
GTCTTCTGAGTGTGAACATGACTCTACTGCTGCTGCTGCTGCTGCTGTGC
CCGAGGCAGGCGGGACAACAACGCACAGCACCAGCACAACAGTAGTGTAG
CAGCAGCAGCACTCGTACAACTGTACACCCCTGCTGCGGAAGCTGCAGTC
CAGCACACAGCTGTACCTGTTGTTGCGCTGCAGCAGTGAGACACATCACG
CTGCGTACTTGAGGGTGGCGGTAGACGCCGAGTGAGTCTTCTTCTCTCTC
TCGCCCGGCTGACGGGCGATAATTTTAGTCATCCGCAGTAGATTTGTTTT
TCTTTTTTTTCCTTCATCATGGCGATCTCTCCTCCTTATCTTCCGTGTGA
TGAGCACAGCCTACCAGGTACTTGCTGTTTTGGCGGGGGGTGTCTGAAAA
ATCTATTACTTTGACCCCTTCTAGTATGATACGATATCACATATGCACTA
TTTGGGGAAGCTTTCGACGAAGTCGATCTATTGCACCCTTCCGGCGGATG
CTAGTGTTCGTTGTGGAGATATTACATGCGGAAACTGCTGTAACTTCTGG
AGGAATTGATGTACACTGCTTCACAAGCTAAACGACTTTTCGATATATAT
TTTTACGAAGTACAGCAGTGTACCGACTCGCACTAAAAATTAAAAACCGA
AGGCACGTATATATAATATCGTCATACCGTAGGAGGAAGGTTTGGCCAAT
AAAACACAATAAAAAGTGAAAAGACCGAAAGGTGTAGACTGGTGCCCAGA
ATAAATGGGATGACAACACACACACTCGAGGTGCGGTCAACAAGTACAGC
AGTAGTACAGCAGTATCATTTTTGTTTAGTTTTTGGCCGGCTGGCCAGTC
CATCAGGGCTTGGGCTGCTTCTTAACAGCGAAATCAAAGCCGAACATCGA
AACCAAAGTTGATGATAATGCCAAAAGATCCATGCCAACTCTGATTTCGA
TTGCCAGGGGTCTTGACCAAAATGGCCGATATCGAAATCAAAATTGAACA
GGGAATTCGAACAGCCTTTGGTTCCTGCAAATAAAAGCTGTGGACGTGGC
GACAGCAACAACAGCAGCAACCCCATCGCACATGCACGCGGCAGCACATG
GTTTGTGTGTGGTGAAGAGCAGCGGCTTGCACGGATGACCAACTGGCAGC
AGAGCCAACCCTCCGGGTGTTGTGTGTAATCGTAAAACATCATTCGTATC
CCACCTCTTTAAGGGTTCCGTTTTCAGCAACCCGCGCAAGCAGCTCCGGC
AGCAGTACAAAACCCCTCATGTTGCTTCGTCGTGGGACATCCCGATAATT
AAACGCGCAAACTCGCACTGTTATGTTGTGGCCGTGGTTTTTGAGAGAGG
CACTACGCACCACCAGTCGCCCCTCACGAGACGCCACCCACAGCACCGGT
CCAATATTATTATTACTCTGGTATCGCTGTGCCTCAACACACACCTGACC
CTCGTGCTGGAGAATCTGAACCGGTATTTTGTGCCTGAACCGGTGTTTGG
TGTCTGTTTCACCCAGGCGGTGAACGAGCTCTCCCACCGAGTGTTCGCCC
AGTATTACAAGGCTCACGCGGCAAAGACGCGATACAACCTCGAACTGGAA
GGTCTTCTCGGGAGGGACGGGCTTTTGTCCGACTTCTTAGCGGAGGCAAG
ACAGCCTAACTTGGCGGTACATTCAATGCATTACGGCTTTCGCTCAACAT
TTCCAAAGACTCGTTCATCATCTGATCCCATCATAAATTTACTGTTCCGT
ACTATCGCACGACGATGCACGTGTGTTCACCCCCCATTCGCTTCGCATTA
ATTTGGTCCCGTATTTCTCTCGCGGCGTCTTGTTACGCAGTTCATCACCC
CCGTCATGTTCAGCGGGCTCCTAGATATCGAACATACCAAGGAAGGCGAG
GTCATGTCGCACGAAGATGTTGCAAGCAAGGCGGGGCGCAAGGCCCGCGA
GTGGGCCAGGCTCACGAATGGCGGATTTGTCACCAGGAACGCCCGGGCGT
TCCAAGATAAGAGTGACCCGCGGCCCGACGGCAAGACGCAATGCTTAGCG
ACTCAGGTCGACGTCCCGATCGTGCCTTTATTGCGCCATACGCGATTGCG
ACAGGCAAGTGATTTTTTTCTCGGAATTTCCCGTGCCCATATGACCACTT
TTGTTTTTTCGGCAATATGTATTTCCGACTGCAGCAGTAAACCTACGCGC
TTTTTAATTTCAACAATATAAATGTTGTCGTCCTTCTTCCTCCGTACTGG
GTAGCTCATTAAACTTCAGCCCGATTTGTCGTGTGCTTTGTCTCTAATTT
ACCGCCTGCCTTGTGTGGTTGAAGATGATTAAGTTACTTCACATCTTCGC
AGGTTAATGTCCGCAGTGTGTTCTAACCGGACGCCCGTTGCCTGTCACAC
GCGTGCAATATTGTTTAAGGGGAAGGCGGCGGCAGCAGCGGCGGCGGTGG
CGGTAGCGGCGGTGGCGGTAGCGGCGGTAGCGGTAGCGGCGGTAGCAGCA
GCAGCAGCGGCGGCAGGGGCAGCGGACGCGGCGGCGGCGGCGGCGGCGGC
AGGGGCAGCGGGAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAG
CAGCGGCGGTGGCGGTGGCGGCAGCAGCCGCGGCGGTGGTACCAGTACCG
GCGGTAACCGTGCCGGTGCCGGCTGCAGTGGCGGTGGCGGTGGCGGTGCC
GGCGGCGGTTGCAGCAGCGGCAGCGAAGACGGCTGTGTGTTGGTGGAGGA
AACCGCACAGCCCGCCGAAGATAGCGACGAGGGCTCCTGGACGCAGTCGT
TCCTTGATGGAATGATTTAGTTCGTGCGTCCGCGCTGTCGAAAGGTGCTT
CGTTGTGTTTCGGATGTATGCCCGTAAGATTCAGTTCTGTCCTCTGTTTG
GTACTCGTCGTAAATGTACGAAAAGTCCCACGATCGCATGTGTTGTGCTG
GTGTACGTTGCATGGAGTACCCATTTATTCCCCAGGTTATGTTGCCGAAT
CTAAGTTGGTTCATTGCGTGGTGCATATCATTTCAGGCCAATGTTTCATG
TGCTTGTTCGTTCGCCGTTTTGCCTTGTTTGTTTGAAATTTCGCTTCATA
CAGTTTTCACTCTTCTCCACGTGTGTGTTCCGGCAACGTGTCTCATGCGG
AACGCCTGTCGCTCTTACGTGCGTTCAAAAATTGTTTTCAGGATGAGCCA
CTAGCTAAATCAGCGGCAGCGAAGGTGGCGGGATGGTGGTGGGGACGGTG
CCGCCCGCCTCCAAACGTGACGAGGACTCTTAGATGCAGTCGTTCTTCCA
TCGAAGGATCCATTGCTTTCGGCCAGAATGACGCGCCGATATCCGTATTT
TGTATTTTGCGGCATTTATCAGTCCAAACTCTTTATCGCAATGACTTGTA
GGGGCGGGAAGCTGACACATGGTTTTTTCGATGATTAAGCGAGTAGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig138:493909..499406+

>mRNA_P-littoralis_Contig138.105.1 ID=mRNA_P-littoralis_Contig138.105.1|Name=mRNA_P-littoralis_Contig138.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig138:493909..499406+ (Pylaiella littoralis U1_48)
ATGTTCAGCGGGCTCCTAGATATCGAACATACCAAGGAAGGCGAGGTCAT
GTCGCACGAAGATGTTGCAAGCAAGGCGGGGCGCAAGGCCCGCGAGTGGG
CCAGGCTCACGAATGGCGGATTTGTCACCAGGAACGCCCGGGCGTTCCAA
GATAAGAGTGACCCGCGGCCCGACGGCAAGACGCAATGCTTAGCGACTCA
GGTCGACGTCCCGATCGTGCCTTTATTGCGCCATACGCGATTGCGACAGG
CAAGTGATTTTTTTCTCGGAATTTCCCGTGCCCATATGACCACTTTTGTT
TTTTCGGCAATATGTATTTCCGACTGCAGCAGTAAACCTACGCGCTTTTT
AATTTCAACAATATAA
back to top