mRNA_P-littoralis_Contig138.88.32 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig138.88.32 vs. uniprot
Match: D8LRB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRB1_ECTSI) HSP 1 Score: 760 bits (1962), Expect = 1.520e-255 Identity = 498/822 (60.58%), Postives = 594/822 (72.26%), Query Frame = 2
Query: 329 TVSVASCDDLPTSAITQDTVLELTATEISCDVNTALEITNGASLQMISSEQGGTTINNIKIWVQDGTFLCDVPNLEWTSVETVSGIHNFQVRGGAAMRTEEDTSATFVQDVAFIACELPAEDFSGGSEGAAIANFGSLVFQGNTVFRDTPDAGALYTWGSVTFEKDATFDNNKSNANGEGGGSGAGLYIDSFGIAXXXXXXXXXXXXXXXXXXXXXXXXXXFSVSSSEEAMVFSGPVTVSGNSGAQGAITLWSGQSVIFESLVTFTDNIMAPKLYGDSSLGGAMWVTNYGGDPVEFLGGVTATGNSAKNGGVFYLSNEASVILSAPVNISGNEARLAXXXXXXXXXXXXXXXXXXXXXXXXXTICPGFNIVEGEVVFDEGETFTAGTKDLCYFGNDATGSAPVDLVEEFDCEAYSAIAPVTNEHPYLVLDTAAVKSWDFGSGGGFSCDTQLIVYVTGGEELTVTSTAASSTMSNVHLEVIGYTSLVLDVPDLTMSGIFQSQVGGAVFVEDGSSLDIVNDITFQSNSIQAEYSLGQWVPRGGAAIFSAGTTTFHGRAEFFGNGQYEADANGYEPSNEDGGALSNSGTMTFMKRGRFIDSFNXXXXXXXXXXXXXXXXXXXRAIFTNNSAGVAYTDDGEXXXXXXXXXXXKGESSTILFNGVAIFKDNVGALGGCALASKGWVFSENDDDLAAGDNKITFADKAKFKDNYC-DGEYPTIYDDRDFADWADNNKGGGAILAYGATSIEFANTAVFKRNEGPNGGAITNSAEISFISDAKLVTADNVVTGTLSQCSDILNNDVGTIVIGTEAITGASDSLCERTAA 2791
T +V SC D P S IT DTVLELTA EI+CD NT +E+ +GA+++ I+S T +NN+K WV++G FLC VP L+WTSVETV+ IHN QV GGAAMR E ++ATF +DV F ACELP EDFSGGSEGAAIAN G+L+FQG F+DTPD GALYTWG +TFEKDA F+NNKS G+G GSGAGLY + G XXXXXXXXXXXXXXXXX + VF GPV V GNSG GA+ L V FE LVT DNIM PKLYGD S G A+ + +Y V+F G+TATGN AK+GG Y+ XXXXXXXXXXXXXXXXXXXXXXXX + CPG +GE+VFD GET+T+ + +LCY G GS P DLVEEFDCEAYSA AP +N+ P LV+DT +KSWDFGSGGGFSC TQ+IVYVTGG ELTVTS+AAS+T+ N EV G++ L+LDVP LTM+GI+QSQ GGA+FV+ GSS+++++DITF N++ +Y LG W RGGAA++SAGTTTF+G A+F GNGQY+ADA+GYEPSNEDGGA+ NSG+MTF ++G F+D+FNXXXXXXXXXXXXXXXXXXX NNS GVAYT XXXXXXXXXXX + ST+LF+G+AIF DNVG G ALASKG +DDD + D+K+TF DKAKFKDNY PT + D +KGGGA+ A G TS++F NTAVFKRNE GGAI NS ISF+S+AKLVTADNV + S C+DILN+D G I IGT ++G SDSLCERTAA
Sbjct: 38 TTTVGSCSDWP-STITTDTVLELTAAEITCDTNTHVEVLDGATVE-ITSALAATKLNNVKFWVREGNFLCSVPVLDWTSVETVANIHNVQVAGGAAMRIEPGSTATFAEDVTFSACELPVEDFSGGSEGAAIANLGTLLFQGTATFKDTPDGGALYTWGDLTFEKDAIFENNKSINGGDGNGSGAGLYSELDGEVLFMGAAYFIXXXXXXXXXXXXXXXXXXCNLPT----VFKGPVVVRGNSGMLGALYL--NGDVTFEDLVTVEDNIMEPKLYGDRSEG-AIRLGSY--SNVDFQAGITATGNIAKDGGALYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS-CPGIEFTDGEIVFDGGETYTSASTELCYLGTSTDGSTPTDLVEEFDCEAYSATAPTSNDLPILVIDTQEIKSWDFGSGGGFSCPTQMIVYVTGGGELTVTSSAASTTIDNARFEVSGFSKLILDVPGLTMTGIYQSQAGGALFVDVGSSMEVMHDITFLGNTLAIQYDLGLWEARGGAAVYSAGTTTFYGTADFLGNGQYDADADGYEPSNEDGGAVYNSGSMTFARKGTFLDNFNXXXXXXXXXXXXXXXXXXXXXXXKNNSVGVAYTXXXXXXXXXXXXXXXXXDDSTVLFSGLAIFSDNVGGTAGAALASKG--SDPDDDDASDVDSKVTFEDKAKFKDNYIIPPRRPTSSSEY----VVDEDKGGGALAALGVTSVDFQNTAVFKRNEAVKGGAILNSGSISFLSEAKLVTADNVAS---SACADILNDDSGVINIGTTTLSGGSDSLCERTAA 838 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.88.32 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig138.88.32 >prot_P-littoralis_Contig138.88.32 ID=prot_P-littoralis_Contig138.88.32|Name=mRNA_P-littoralis_Contig138.88.32|organism=Pylaiella littoralis U1_48|type=polypeptide|length=848bp MKTTVCFAAAACLTAAPLLVKAQMITVSVASCDDLPTSAITQDTVLELTAback to top mRNA from alignment at P-littoralis_Contig138:396519..455150- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig138.88.32 ID=mRNA_P-littoralis_Contig138.88.32|Name=mRNA_P-littoralis_Contig138.88.32|organism=Pylaiella littoralis U1_48|type=mRNA|length=58632bp|location=Sequence derived from alignment at P-littoralis_Contig138:396519..455150- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig138:396519..455150- >mRNA_P-littoralis_Contig138.88.32 ID=mRNA_P-littoralis_Contig138.88.32|Name=mRNA_P-littoralis_Contig138.88.32|organism=Pylaiella littoralis U1_48|type=CDS|length=2544bp|location=Sequence derived from alignment at P-littoralis_Contig138:396519..455150- (Pylaiella littoralis U1_48)back to top |