prot_P-littoralis_Contig138.70.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig138.70.2
Unique Nameprot_P-littoralis_Contig138.70.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length69
Homology
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.190e-42
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MADPVNGGAVGDEIEAEQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            MADPVNG AVGDE+E EQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR
Sbjct:    1 MADPVNGAAVGDEMEEEQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.890e-22
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0
Query:   23 GGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            GGV+Y+CGDCG+ N IKAKDPIQCR CGYRIMYK RTKRLIQFEAR
Sbjct:   13 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: K8YXJ2_NANGC (DNA-directed RNA polymerases I, II, and III subunit RPABC4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXJ2_NANGC)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-19
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:   24 GVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            GVTYLCGDCG+ N+IK KDPI+CRQC +RIMYK RTKR++QFEAR
Sbjct:   39 GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 83          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A197K819_9FUNG (DNA-directed RNA polymerase I n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K819_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 4.180e-19
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0
Query:   21 PTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            P   +TY+C +CGSDN IK K+PI+C++CGYRIMYKKRTKR++QFEAR
Sbjct:   14 PAPAMTYICAECGSDNEIKPKEPIRCKECGYRIMYKKRTKRMVQFEAR 61          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A2R6WQG7_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WQG7_MARPO)

HSP 1 Score: 80.9 bits (198), Expect = 7.270e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0
Query:   25 VTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            VTYLCGDCG+DN +K  D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   12 VTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 55          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A9U0K9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U0K9_PHYPA)

HSP 1 Score: 80.9 bits (198), Expect = 7.450e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0
Query:   25 VTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            VTYLCGDCG+DN +K  D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   13 VTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A1Y1WTM2_9FUNG (Uncharacterized protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WTM2_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-18
Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 0
Query:   25 VTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            +TY+CGDCG +N I+AK+PI+CR CG+RIMYKKRTKR++QFEAR
Sbjct:   17 ITYICGDCGVENEIRAKEPIRCRDCGHRIMYKKRTKRMVQFEAR 60          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A061R0E4_9CHLO (DNA-directed RNA Polymerase II subunit K n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R0E4_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-18
Identity = 31/45 (68.89%), Postives = 41/45 (91.11%), Query Frame = 0
Query:   24 GVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            GVTY+CGDCG++N +K ++ IQCR+C YRI+YKKRTKR++QFEAR
Sbjct:    9 GVTYICGDCGAENTLKPREAIQCRECSYRILYKKRTKRIVQFEAR 53          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A0M0JEK0_9EUKA (Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEK0_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 2.900e-18
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   21 PTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            P GG  YLCGDCG  N IK KDPI+CR CGYRI+YK RTK LIQFEAR
Sbjct:   74 PRGGTAYLCGDCGQTNEIKPKDPIRCRFCGYRILYKMRTKNLIQFEAR 121          
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Match: A0A1Y1WJV6_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJV6_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 3.350e-18
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 0
Query:   25 VTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
            +TY+C DCG+DN IK K+PI+CR+CGYRI+YKKRTK+++QFEAR
Sbjct:   17 MTYMCADCGADNDIKPKEPIRCRECGYRILYKKRTKKMVQFEAR 60          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.70.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI9.190e-4295.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8S5_9STRA9.890e-2284.78DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
K8YXJ2_NANGC2.600e-1977.78DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A197K819_9FUNG4.180e-1968.75DNA-directed RNA polymerase I n=1 Tax=Linnemannia ... [more]
A0A2R6WQG7_MARPO7.270e-1975.00Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A9U0K9_PHYPA7.450e-1975.00Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1Y1WTM2_9FUNG1.170e-1872.73Uncharacterized protein n=1 Tax=Anaeromyces robust... [more]
A0A061R0E4_9CHLO1.990e-1868.89DNA-directed RNA Polymerase II subunit K n=1 Tax=T... [more]
A0A0M0JEK0_9EUKA2.900e-1875.00Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochro... [more]
A0A1Y1WJV6_9FUNG3.350e-1870.45Uncharacterized protein n=1 Tax=Linderina pennispo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 25..68
e-value: 4.5E-21
score: 86.0
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 27..58
e-value: 1.7E-16
score: 59.6
NoneNo IPR availableGENE3D2.20.28.30RNA polymerase ii, chain Lcoord: 12..68
e-value: 5.6E-26
score: 91.7
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 17..68
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 25..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:340572..345294 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.70.2mRNA_P-littoralis_Contig138.70.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig138 340211..345360 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig138.70.2 ID=prot_P-littoralis_Contig138.70.2|Name=mRNA_P-littoralis_Contig138.70.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MADPVNGGAVGDEIEAEQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCG
YRIMYKKRTKRLIQFEAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4