mRNA_P-littoralis_Contig138.63.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.63.2
Unique NamemRNA_P-littoralis_Contig138.63.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig138.63.2 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE)

HSP 1 Score: 483 bits (1243), Expect = 7.150e-159
Identity = 267/411 (64.96%), Postives = 300/411 (72.99%), Query Frame = 2 
Query:  446 DVGEELWIVGRILEDMDIRLGAKQEKLRVREIGVIQRYAAIISTLDGSLELREGDDFLGWLRSQGFDDAGFSSPSSTPSSRSTPRGGSGAEDGVDTXXXXXXXXXXXXXXXXXXXXXXXEAMEGAKKRAELEAFLSAASARLNALVAGKEEALFGDRGEEEAVE-----GKGSGVEREKGXXXXXXXXXXVSTNMSDEDLYQARLGAHRAMLCHCISLLLSSLKKQQLKTGLGVEEVAPVVRSLYLAAPEDRLGAIFPLFDTHGDGHLDVEGVERAVDAAILPVAVAAERCYLAAARPALDKKAAAVMPATMKYALWDVLEVPVKRRCCFAWAEDRKQVGPDEWRVSWEQFAPSRRKSFPEFESVAENYVAEFSKRRSAWHESRKGRREAIVYGSALLVGVLFIDSFLKMV 1663
            D  EELWIVGR+L+DMD RLGAKQEK+RV EIGVI+R+AA++S LDGSLE REGD+FL WLRSQGFDDA   SP+  P       GG       +T                            A++RAE+EAFLSAASARLNALV  KE+ALFGDRGE EA E     G+  G      X         VS NMSDEDLYQARLGAHRAMLCH +SLL SSL KQQLKTGL + EV    RS YLAAPEDRL A++PLFDTHGDGHLD E V+ AVDA +L V  A+ERCY AAARPALDKK AAVMPATMKY LWDV+EVP+KRRC FAWAE+RKQVGPDEWRVSW+QFAPSRR+ FPE +SVA +YVAEFS+RRSAWH SRKGR+EA+VYGSAL V VL ID+ LKMV
Sbjct:   98 DAAEELWIVGRVLDDMDTRLGAKQEKIRVHEIGVIERFAAVVSALDGSLEPREGDEFLAWLRSQGFDDA---SPTPQP-------GGGPXXXXXETAAGTKVENKCSNGKSEGG---------AAEERAEVEAFLSAASARLNALVVDKEDALFGDRGEAEAEESLQAKGERGGXXXXXXXGGDASGEPVVSPNMSDEDLYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQVGPDEWRVSWDQFAPSRRQHFPEMDSVARDYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLIIDNLLKMV 489
[Close]
BLAST of mRNA_P-littoralis_Contig138.63.2 vs. uniprot
Match: A0A836CPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.030e-15
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 2 
Query: 1352 MPATMKYALWDVLEVPVKRRCCFAWAEDRKQVGPDEWRVSWEQFAPSRRKSFPEFESVAENYVAEFSKRRSAWHESRKGRREAIVYGSALLVGVLFIDSF 1651
            MP+ ++YA WD L+ P KRRC FA+AE RKQVGP EW V+ + F  ++R  F +   V    +      R  WH  RK R+ A +YG+ L    + +D++
Sbjct:    1 MPSALRYATWDRLDFPSKRRCAFAFAEGRKQVGPVEWHVTADAFLETQRTYFVDLVRVGGALMDVMEDERWQWHMLRKRRKRAAIYGALLFSATVVLDTW 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.63.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE0_9PHAE7.150e-15964.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPD1_9STRA6.030e-1540.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:314076..324824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2691
Hectar predicted targeting categorymitochondrion
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002220.1
Cds size1590
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789638.0802605-UTR-P-littoralis_Contig138:314075..3151001680789638.0802605-UTR-P-littoralis_Contig138:314075..315100Pylaiella littoralis U1_48UTRP-littoralis_Contig138 314076..315100 -
1680789638.1798093-UTR-P-littoralis_Contig138:324748..3248241680789638.1798093-UTR-P-littoralis_Contig138:324748..324824Pylaiella littoralis U1_48UTRP-littoralis_Contig138 324749..324824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789638.0980053-CDS-P-littoralis_Contig138:315100..3152331680789638.0980053-CDS-P-littoralis_Contig138:315100..315233Pylaiella littoralis U1_48CDSP-littoralis_Contig138 315101..315233 -
1680789638.116487-CDS-P-littoralis_Contig138:316140..3162291680789638.116487-CDS-P-littoralis_Contig138:316140..316229Pylaiella littoralis U1_48CDSP-littoralis_Contig138 316141..316229 -
1680789638.127314-CDS-P-littoralis_Contig138:318811..3190651680789638.127314-CDS-P-littoralis_Contig138:318811..319065Pylaiella littoralis U1_48CDSP-littoralis_Contig138 318812..319065 -
1680789638.136439-CDS-P-littoralis_Contig138:319569..3197231680789638.136439-CDS-P-littoralis_Contig138:319569..319723Pylaiella littoralis U1_48CDSP-littoralis_Contig138 319570..319723 -
1680789638.1446207-CDS-P-littoralis_Contig138:320362..3208711680789638.1446207-CDS-P-littoralis_Contig138:320362..320871Pylaiella littoralis U1_48CDSP-littoralis_Contig138 320363..320871 -
1680789638.1547415-CDS-P-littoralis_Contig138:322402..3226481680789638.1547415-CDS-P-littoralis_Contig138:322402..322648Pylaiella littoralis U1_48CDSP-littoralis_Contig138 322403..322648 -
1680789638.1646366-CDS-P-littoralis_Contig138:324543..3247481680789638.1646366-CDS-P-littoralis_Contig138:324543..324748Pylaiella littoralis U1_48CDSP-littoralis_Contig138 324544..324748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.63.2prot_P-littoralis_Contig138.63.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 315101..324748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.63.2

>prot_P-littoralis_Contig138.63.2 ID=prot_P-littoralis_Contig138.63.2|Name=mRNA_P-littoralis_Contig138.63.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=530bp
MVLLSSISRRGVPVVGVAASASASACAGARRPSSSVTAAPARLLVRQLKQ
TRDDHQATATLSRQRRKLSAGPAPIQARVGGTAAAAAPTTAADATAAASG
ASPQAASAVEEKGKGGSSGGGGGDVGEELWIVGRILEDMDIRLGAKQEKL
RVREIGVIQRYAAIISTLDGSLELREGDDFLGWLRSQGFDDAGFSSPSST
PSSRSTPRGGSGAEDGVDTATTASESSAKNSGGVSGSGGGGGEAMEGAKK
RAELEAFLSAASARLNALVAGKEEALFGDRGEEEAVEGKGSGVEREKGAA
AAAAAAAAVSTNMSDEDLYQARLGAHRAMLCHCISLLLSSLKKQQLKTGL
GVEEVAPVVRSLYLAAPEDRLGAIFPLFDTHGDGHLDVEGVERAVDAAIL
PVAVAAERCYLAAARPALDKKAAAVMPATMKYALWDVLEVPVKRRCCFAW
AEDRKQVGPDEWRVSWEQFAPSRRKSFPEFESVAENYVAEFSKRRSAWHE
SRKGRREAIVYGSALLVGVLFIDSFLKMV*
back to top

mRNA from alignment at P-littoralis_Contig138:314076..324824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.63.2 ID=mRNA_P-littoralis_Contig138.63.2|Name=mRNA_P-littoralis_Contig138.63.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10749bp|location=Sequence derived from alignment at P-littoralis_Contig138:314076..324824- (Pylaiella littoralis U1_48)
CTGGTGTGTTGCCTGCTGTGCTTGCGTCCCCTCGCATCACGCACAAATCG
TCCCAGGTCTGTGGGGCAGGAGCGCAATGGTCTTATTATCGTCCATCTCG
CGGAGAGGTGTGCCGGTGGTAGGAGTTGCAGCGTCAGCTTCAGCTTCCGC
TTGCGCCGGCGCACGCCGGCCTTCCTCTTCCGTGACTGCCGCCCCCGCAC
GTCTACTTGTACGTCAACTGAAGCAGACTCGCGACGACCACCAGGCAACC
GCGACGCTCTCGCGGCAGCGGCGGAAGCTCTGTGAGTGCAATATTGTAAT
ATTACTACCGTCTATTAATATCTGTACGTAGCTGTGTGTAGCCAAGGAGG
TCACGCTCGTTTTTAAAAATGCTGTGAAGTTGTATGTACGATACATGAGA
CAAAGTGACCATGGGACCGGAATGTTCCTCTCCCCCCCCTCTCTTCGCCT
GTTCGGCAACACCCCTGAGGTGTGCGGTAGACCACTGCTCTTGCTGTACT
TCTGTGGTGCTGAAGCATTATCATAACCATAACGAACTGAGCGTGCTGTT
GACTCTGTTACTTCATGTCGTTGCTGTGTCGATGGCGCGATTCCTTGTTG
TATTGGCGATGCAGCCTGTTTGATACGAATCAATCCCGCCATTCTACGAA
CTGCTGATGCACCGGTCGCCCCGCTGTTCCAGAACAGCAGCAGTATCGTA
CTCCGTATATACTAGGAGTAATGATACGCATGCATGTCCTTGAAACTTGA
AATCCGAGGTGTGAGAATCTAAATCGAACTTGATGCTGTACTTTGTACTG
CTGTACTCCTGTACAGACAGCACTGCATCAATGATACAGCATGCAGAGCG
AGTATAGTATTTTTTGAAATTTCAAAAACATCAATTTGTTCGCCTCTCTC
CAGACAAGGATCTGGAGCAGATATTGCGAGGAACACAGACTGAAATACGT
CTACCAGTGTTTCTATACTCAGCAGACAGTTGTTGTTGTTGTTGTTGTTG
ATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACC
AGGCACATATCGTGCTAGGAGGAAAAAAAATAAAAAAATAAAATATATGG
ACTATGATCACCCACAGTCAGATCAGACGTGGTACCGTGTACCGTTGCAG
CCCCCCTGAGGGTATCAGGCTCAACAGACACTTTGAATTTTACCTAAAAG
TCGACGAGGGAAAGTGACGGCCGGGCCCTCCCTCCTTGCGACAAAAAGCA
CGGCAACCACCGCGCAGCAGAAAGGTCGAACTGAAAGTATCAAGATCCTC
CTGTGTGTCTACCTTCCCCCGGCGTGACCCTGGCTGATGCCCTCCCCCAC
CTTCATGCGATACCGAAAGGTGTGGTGTAGGCTGGCGTCCAGAAAACCAT
GAATGTGATGACGACACACGTATCATAGAGCTGCTGAATCATACCTGAAA
CACGCCTACTTACTTGTGTGAATACAGCAGACCGAACTGGAGAGGAAATA
CCGGTAAAAACAGCTGTCACATGATATAATATGATATGATATGATACTTC
GAAGTATGATGTCGTCGGTCAATTGCTGCAAGTTTTTCGCGCATGAAAGC
AGTAAAATACAGAGTTACACAGGTACGGAACCGCTGCTGCTGCTGTGCAC
AGGCGTGCGGTGCCCGCCTCAAATAGCGGTGGTGAAAATAGTAAGCCCCA
GCGTTGCTAACGTGGTACGATATGAGAGGACGATGCGCGGAGTGACACCA
TTACACAGCACCAGTAACAAGGGGTGGAGAGGAATGATTTGCATTCTGCA
ACGTTCTCTCTCTCCAGTCAACAGACAGGCGATTCCGACGAAAACATTGC
ACCAAGCCATTTTCATTTGCTCAAGTACTTGTACGTGTCTCAGGCTCTTA
CCCTACCGTAGCATGTACTGGAACGATGGCAGTTATCTTTGCTTGTTTGC
TTCTAGTGCATGTGAGAGCATGCTGCATATTTTGATGCTGCTCGTATCCA
CCGGTACAGAAGGCGACTCACGAAGCGCCCTTCCAGAACGGGAGACCTTC
TGCTCAGCGCACGCTTGCACCGTATCGTCGTAAATTTGCGTTTTTTTACT
TCTTTTCGAGAAAACAAACCGCATCCCGATGCTTCCCTTTCTTCACAACC
CCGTGTGCATATATTTCCTTCCACAGCTGCCGGGCCGGCACCAATCCAGG
CCAGGGTCGGTGGTACCGCCGCCGCCGCCGCTCCGACAACAGCAGCAGAT
GCAACAGCAGCAGCAAGTGGTGCTTCACCTCAGGCGGCGTCGGCGGTAGA
GGAGAAGGGGAAGGGAGGTAGCAGCGGTGGTGGTGGTGGCGATGTTGGCG
AGGAGCTTTGGATCGTCGGCCGGATTCTGGAGGATATGGATATACGGCTA
GGGGCGAAGCAGGAGAAGCTTCGTGAGTTTTGCTTGTTGTTTTGCGCTTT
TTTCGGGATGGTGTTCAAGTGGAAGCATCGAGAGGACAGCAGTCGTGCCG
TTAGTTTGTGAAACCTCTTTTTATTTCTGTCTGTAGTAGATGGTGTGCAC
TTTCACAACGGTCTCGTCGGAAATAGATGATGCATTCATTCTATTTTGCA
TCAGTGTCCGGAAATGGCGTGTGGAAGTGTTCAGTGGCGACAAATGAGGG
TGCTTTCTGGGCCTGCTGTTCACGGTAGCACCAGGGACGCATTGCGTACG
CTAGCAGTGAGACCTGTAGTCCAAACAGGCCCTTGCTCATGAATCAATAC
TTGCATATTATGTGCTGTTTTTTTGTCAAATTCACGGCACTGAGTTTTAG
CTGTCGTATGCGGGTCTTCGCGAGTTTCACTAGCTAGACCTCCCGTTTTG
CTCACCCATCCGCGACATGGATGGCTCTCTACCTGTGCTTGTTTTTCTCC
CACAATCCAAAAATATGCTTATGTTGGTACTTGATCTGTTACAATAGGAA
AACAAGATACCCCTCATCAGAGAAGAGGCTACCACACCAACGCACACTGC
TCTCAACTCCGATCCAATCAGGCTGGTGCACGGAAGAAACACCAAATTTA
GTCAACGCACTGTCCCGAATGCAATAAACCACCGATCACAACAAATATGG
TACCACACTGACCGCTGTCAGTAGAGGGAGACCGTGACGTACTCAGATTT
TTGTGAAAGGCCTATCAGTGGAGCTCGTGGACGAAATGTGCCATATCCAC
AGAGTGACGTTGTATAACACCCCCCCCAAATTTTGAAATATCAGCCTTTC
CACTCTAAATGCTAGATGAATAAAATTCGAGATATATCTTTTTTACGAAT
GTATGGTCTCTTTAGATTATCAGGACGGTGGCCAAAAAATATTTTTTCGA
AACTCTACTACAAATTGACGTAGTTTTGCCAATATTAGCGTAAATATTCT
TAAAAACGGCCCATTCTGCTCTTTATCCTAGTGAGTAGGTGTTTTTCAGT
ACTTGACCGCACTAAAGTGCGTTTTCTCACGCGGTTTTTTCGAGTTAGAC
CCTGAAACTTTGCACGCATGTTCGTTTCAAGTCAATACAAACCTTTCTGC
TGTCGGGGTGCAGCGATTTTTGTTTAATTTTACCGAATTTCTGGGGTCCC
GAGTCGACAAATGCATGCAATAAATACCTTCATACCTATAACTATTGAAA
AGAAAAAAAAGTCGTTGCACCCCGACAGTAGAAAGTTTCGTTTTGACATA
ACAAGCATGCGTGCAAAGTTTCAGGGCCTAACTCGAAAAAATCGCGTGAG
AAAACGATGTTGACTAAATTTGGTGTTTCTTGCGTGAAGCAGCCTGTAGT
ACACGCCGTACGGCAGTGCTACTTACCAGGTACATATCTACTTCGTATTA
CCTGTATCTATGTACCAGTATGTGTTCGTTGCCTCCGACAAATCGGCAGC
AGTAATGACCTTTCACATCAACACAACCCCCCAAAAATGTCGTCATATCA
CAGGGGTGCGCGAGATCGGCGTGATCCAGCGGTACGCGGCCATCATCTCT
ACCCTGGACGGAAGCCTCGAGCTCCGCGAAGGCGACGACTTTTTGGGATG
GTTGCGCTCGCAAGGCTTCGACGACGCAGGTTTCTCCTCCCCCTCCTCGA
CGCCTTCCTCCCGATCCACGCCACGCGGCGGCTCTGGTGCGGAGGACGGT
GTGGACACCGCGACGACAGCGAGCGAGAGCAGCGCGAAGAATAGCGGTGG
CGTTAGTGGTAGTGGTGGGGGGGGGGGCGAAGCGATGGAGGGGGCCAAGA
AGCGGGCGGAGCTGGAGGCGTTCCTGTCCGCGGCGTCGGCGAGGCTGAAC
GCGCTGGTAGCCGGCAAGGAGGAGGCGCTCTTCGGCGACAGAGGAGAAGA
AGAGGCCGTGGAAGGAAAGGGGAGCGGGGTAGAGAGAGAGAAGGGGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGTCTCGACGAACATGTCAGACGAG
GACTTGTACCAGGTGTGGAAGAGGGCCAGGGGTAAGGGTCCAGGGGCGGG
GGCGCTTCGCTTTCGTGAGGATTTTTTGGTGATGGCTGCTGTGATGCGTG
TGTCATTTCCTTTCCTTGCCAGGGTGTGTGCAACAGAGTAGAAATCGCAC
CGGGTTGTCCGAGGAGTTCAGGCTTGCAACCACCAGTGTGTACCGCGGTG
CCACCGTTCGTGTGGGAGGATTGTCGTTGTTTGCTTGCTTGCTTGCTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTCGCGTGCGTGTGTGTGTGTGTGTGTGTGCAA
AACGCATTTCGCAGCAGCAGCTACGGATGGCCGCTGGTATGAGAGCAAAG
CGTTGGTGTATCTTACGTGTGCACCACCCACACCAACACTTACCACCATG
CTCGCGCATCGTACGATATGCGGTACTGCTGTCCACGTGATTCGAGCCGC
CCGCCCCTTTTCCTCGCGTCACTCCCGCCCGCCGCCGACACCCGGTACTG
TAGTGTCGTCGTGAACCATGCCAACGCAACCTCTGTGCGTTTGATGCGCT
CGTGACGTACAACTCTCTTTTTCGTGTTGTGGTCGCTGTGCGTGGCCCCA
GGCCAGGCTAGGGGCGCACCGAGCGATGCTGTGCCACTGCATCTCGCTCC
TCTTGTCGAGCTTGAAGAAGCAGCAGCTTAAAACCGGGCTCGGGGTGGAG
GAGGTGGCGCCGGTGGTGAGATCGTTGTATCTAGCGGCTCCGGAGGATAG
GTTAGGTGAGTGAAGCCAGACCGGATCAAGCCAGCTTAGATGCCGAAGAC
GCACAGCACAAACGAGCTGCCGTGTCAGCTCTTCGTTCTGGTTTGTTGCG
CCCCCCCCCCCCTGCCTCTCTTGACCCTCTCCTCCACTGGTGGCAGTGTT
GTAGAGATGTGGTATTTTGTGAAGCCTGACTGTTACTGCTGTAAAGTATA
GTGCTTGCTTTGCTCCTATACATGAGTCACGAGACCCTCGGCGTGACAAC
AGCGGTAGATCTTGTCGAAATTCCGAAATTTCGGTATCTTCAATTGAAAA
ACGCCACGCTTGCCCTCGGCACACCTAGCATACCTCTCTCCTCCTCCCTC
CCCCTCCCCCCCCCCCTGATTTTTTTCGCTCGCCGCCCGTCGTTCCCACC
TCTCCATCCACGACGCCCCCCCCCCTCCCTCCCTTCATCTCCCACGTTCG
AATCGATCGATGACGAAAAACAAAAACAAAATACCAACCAACAACCAACC
AACCGACAGGTGCGATATTTCCGCTCTTCGACACGCACGGGGATGGGCAC
CTCGACGTCGAGGGCGTCGAGCGCGCGGTGGACGCGGCGATCCTGCCGGT
GGCGGTGGCGGCGGAGCGCTGCTACCTGGCGGCGGCGCGCCCGGCGCTGG
ACAAGAAGGCGGCGGCGGTCATGCCGGCCACGATGAAATACGCGCTGTGG
GACGTGCTGGAGGTGCCCGTGAAGCGGCGGTGTTGTTTCGCGTGGGCGGA
GGATCGCAAACAGGTGAAAAAAAATACGTAGTTCGTATGATATGATATTT
GTTGATGTACTAGCGGTTGTGAAGGGGCGGATGCGGGGGGGGGGGTGGGG
GTACTTATTTGTTGTTTATTTGTCTTTGAGCCATTTGACGATTGAGGGCA
TGTCTTGGAAAAAAAACGGGGTGTGGAACGGGGAACGTGGAACCTAGATT
TCTTTTTCCCTGGTCCACGCTTTGTGTCTCTTGGAAAAAAAAAGATTACT
TCGAAATGAAGAACGTGGAACCGTTTGCAAGCGAAAAGCCTGAGGGTCGC
TGTTGTTGTGGTGCAAGTACAGAGGTACAGAAGAAAAGTAGCAGTACAAC
AGCAGCAGGAGTACCGTGACCGTTGAGGGTTATTCAACACCACACACACA
CGCACGCACGAATCTGTCCATCTCCCATCTCTTGGCCGCAGAGCATACAC
AGACATACCTATATATACAGCACACACAGCATAGCACACAATGATGTGAG
AGATGGTTTCATGTCGGCCGGCCGCAGTCGTCCGCGCACCTGTTTGACCA
AAAAGCGGAGGAACAAACAGACGAGGTGTGCGATGGTGTGATCATTTTTT
CTCTGCTGCTCTTCTTGCTGCTGCAGTGCGGTGGCTTTGTTCATGCGAGT
GAGAGGGCTTATATATTACGGTTAATTCTGCGCGTCGCGCTAGGCGGGGT
GGCATGATTGTGGGGGGAGCTAGCTGTGCATGTGTGTATGTGTGTGTTTG
CTTGAGTGTGTCGCATGGTTTTTTTTGTGGTCAGATAGAAGGAGAAAGCT
ACTGGAAAGTTCTTGCCCCCCAGTAGCCCATTCCACACAGGCTTCTGGAC
AATTTTAAGGAACGGAGGCCTTCCAATTATTTTGGAGGAGGGAATGAGAA
ATGTGGAACCCCGGTGGCCGAAATTCTTTCCAGGGATGTTTCTTGCTGAG
GTTGGCCAATCAGAGAATTATTCTAGGTTTCACGTTCCCCGTTCCACACC
TCGTTTTTTTTTCCAAGACATTCCCTGACCGCGCATCTCGTCCGAGACGA
AGCGCTCCCGTTCTTATTCAAAAGTAGCAGGGGGTTGGTTTTGGAAGCGG
TCTGAACGAAGGTGTTGTATGAATTTGCTGTGGGTGCGTAACAGGTACTG
CTGTAACTGTTGGTGGTGGTTGTGGCGGTGCTGGTGCTGGTGCTGGTGCT
GGTGCTGGCGGTGCTGGTGGTTCTGCCACTCCCGCTGTTTATCGCCAAAT
CTAGCCCGTGGCCACAGAAGTGCTGATCCGTCAAAAGATCGGCAACAGGC
ACAGAGAAAGAAGTGAGGGTACACAAGAGGCCGAAGAAGGTACTGCACGT
ATTCTCACACCGGATGATGTGCATTGAACCGAACTTGCACAACTGCCGCG
CAGGTAGTCCATTCGACTGCAATTTTTGTTTTCAGTTTTCCCCCGTCCCA
CCAGCAACCACTCTGTTGGAGTGAACAGCAGGCCCGGTACAGAAGAGAAA
ACACATGATGATGATGATGATGATGATGTCTGGAGTGCTGGTCAGAATGA
CTAGACCCTCAAGCAATGCATTTAATAAATGAACAATCAGTAAGAGCTTT
GTTCGAATACACTCGAGGTCAATCGCCGAAATAATATTTCCTGAGTCAGT
CTACGATATGAGTCGAAGGGCACAGGAAAACCAGCTAACGCTTTTGAAAT
TACAAATTGGATTCGTGCTGCAACAATGAAGGGCACAACGCAGGCATGCG
GAATCGGCACAGGCGTTTTCTGGCGCGTCTCCCTTCTCTCCTGAAAAAAA
AAAAGGAAGACGCAGTCCGTACCCCCGTCCAAGATCAAAATAAAAACGCG
AACGTCGTACAGTAGTGTGTGTTGTCATGGACGGCCTCGATACTGCCCTT
GTGCAAGTAGTGTTGCCCATGGTTACCTCCGGCTCCTCCGCGTAGCAGAC
GGATGCTTTGCAGCAAAGTTGCCTGGATTTGAGTCGAGCCCCCCAAAGGC
GATCAAATTAGTGTTGGGTCGGAAGCGGCCGAATTTGTAGAGGATTGGCA
CAAATTATCACGCCTACAATATGTATCGAGAGAGCGCCCAATCTTTTAAA
ACTATGAGCAGGCCCGGCTGGTGGGTTTCCAGGATCGAGTTGCTGCCAGT
CGTGACGGTAATAGTACCTGGTGTCACACGACAACAGGCCGCTGATTTGG
GTCCAGAAGGAACGGACGCTTTTGTCCAGGACTATTTTTCTGTTCAGGCA
TGCGTGCGCTGATGTCGTCCATCTCCACACCACCTCCGACATCATCAACG
CTTTCCGCAGACGCGGCCGCAGCCGCCCCCTCGTAGTGTGCTTGCAGGAC
GCATCGGATGTATGTGTGCGTGAGCAAACAAAACCTTTTGTACGTTTTTG
ATGTGCTTGTTTGCCGTTCCCCATTGCCGCCTCCCGTGATACATGGACGT
TGGAACCTTTGCTGGCCGTGGAACTCACAACGAAGACTGTTGTCAGGACG
TACCTCTTGAGTATGGTATCGGGCATGCAGTGTATGAACAGCCTTTTTCA
CGTATCGTCGCCTCCTAACGTTGGGACCTGGGGGCACACACGCAGGTTGG
GCCAGACGAGTGGCGGGTCAGCTGGGAGCAGTTCGCGCCATCGCGAAGAA
AGAGTTTCCCGGAGTTCGAGTCTGTAGCCGAAAAGTGAGTGAGGAAGGGA
CGTCTTGATTTTGGGAACAAAAAATTTGCTCACCCACTTGTCCTGCTGTG
CAGTCGCGTCAACAGCACCTGACCTGGATGTTTAGGAGTGGCTCTATTCA
GCAAGCAGTAGAGACGGTGCATTCCCTCTCAAACCGAAACGAGCTTTCAC
TGATCTCAAGATTGATACATGCAACGACACAAAGGAGAAATCCTCGATGC
CCCCCCCCCCCCCCCCCCCCCCCCCCTGCTTGGAAAGACTTGTCCGCTAG
ACCACTCAGTCAGCGGCCTACTGAGTGGTCTAGTAGGCAAGTTCATCTCA
CGAGCTGGAAGGAGTCTGTGGCAGAAAAGTGAGGTTGGAAGGAAAGCTCT
TGGGGGTGCAACAATGCAATTTTAGGGTGTGCTCGTTTCGTCTGTGGTTT
GGGCGATGAGAAAGAGGGGCGTGCCGCAGGAAGTGCCGCAGGAAGTGCTC
CCACGCGTCCACCGGCATTCGGGCGAGCCCTCTGGCTGACGTGCATTTAT
ACGCCGCTCGTCGACCCAAACTCGATTCCACGTTGTATGTTGTACTCCGA
GTATATTTTTATCCGGAAGCGTTCTCGTTATGCAGATAATTTTGGTCTTG
AGTTTGGTTCTAAAAAATTCTGCTCATCACCCCCCTCTGCTCAGTCGCGT
AAATAGCACCTCACCTAACCGTTGGACACAGTTGTTGTCAGGAATGACAG
AGGCGCCTACACGCTCAAAACCGACGTGTAACTTCAATGATCCCAAGATA
TACCATGCAACAACACATGGTAGGACCCGTCCACCCCCCGGCCCACCGAC
CTCACCCCCCACCCCCAACCCCCGCCCCGCGCGCTTCATTTAATCCCACC
TGTCTCTTATGTAACCCCAACTACCCCGTACATACAAACAGTTATGTGGC
GGAGTTCAGCAAACGACGGTCGGCGTGGCATGAATCGCGCAAGGGACGCA
GGGAGGCCATAGTGTACGGCTCGGCCTTGCTGGTCGGGGTGCTGTTTATC
GACAGCTTTTTGAAGATGGTGTGAAAAGCAAGGCGAAAGGGCGACGAGCA
CAGAACTATATATCACCCGCAACACAACTTCTCGGCCAACAATTTTGCAC
TAGACAGCAGTAGCCGCTCTCTGGTGCGTGGGTGCTTTCGTAGGGCTCCT
TCGGCCGGCACTTTCCTTACCGACTGAGGTGTTTGGCGTTTCCCTTCCCT
TCCAAGTAGTCTTTTGCTGAGAGGGCGTATAGTGTGATGAGTGGGGTACC
ATACCGAACGTGAAATCATAAGAGTGAGCGCCTTGCATAAACAGTAGAAA
GCACGCACAAGCGTTTTTTTTATTCACGATGTACATTACGTACGAAGTAC
TTCGTATATATGATACTCCAGGTATGACTTATACACGAAGTGCTTCGAGG
TACGATGTATCGCTACTCTGAATCATACTAGCAGAGTAGACTGGAAGGTG
TGATGAAAGAAAGCGCGAGCGAGAGAGCTCGAGAGGAAGCGTGAGAGTAA
AGCTTGAGAAAAGGCGTGGCGGCAGTATGACGTCAGTAAGATTTTTCGTC
CCCGCTGTGTGAGAAGTGATTCGTTACCCAGACTGTTAAAAACAGCACCG
CCAAGAGTGGCAAACTCACGGCAGTTCTTTTGTTGACATCCTATTCCACT
GCTTACCGCTTTGTTGTTTCACTTGGTCTTTTTTGCCCAGATCCCTCATG
ACGCGCGTCGCCCAAAATTTGTTCGCGACGAATGGAACAATATATTTTTC
AGTTACCGCGGAGAGAATTGAAATTTCCTTCTACGATAAGATCCCCCCTC
GCGGGTTTCTGCCTGTGTGTGTGTGCTTCCGTTTTTTTTTTCGGTTTGTG
TTTAGTTTTGGTCCGGTGCCAAGTGCTCCCCGCCGGAGTGTGTCTCACCC
GTTTTCCAAAAGGTAGCTGTCCGCGTCTGTGTCACAACGCGCGTCACACG
ACGTGGCAAAGGGGTCCCTCGTCGCCACGCGCTTTTGCCAAATTTGATTC
ACCGACAACGAATTGGTGGCGTGCACCGTGTACACTGCTGTAGGAGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig138:314076..324824-

>mRNA_P-littoralis_Contig138.63.2 ID=mRNA_P-littoralis_Contig138.63.2|Name=mRNA_P-littoralis_Contig138.63.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1590bp|location=Sequence derived from alignment at P-littoralis_Contig138:314076..324824- (Pylaiella littoralis U1_48)
ATGGTCTTATTATCGTCCATCTCGCGGAGAGGTGTGCCGGTGGTAGGAGT
TGCAGCGTCAGCTTCAGCTTCCGCTTGCGCCGGCGCACGCCGGCCTTCCT
CTTCCGTGACTGCCGCCCCCGCACGTCTACTTGTACGTCAACTGAAGCAG
ACTCGCGACGACCACCAGGCAACCGCGACGCTCTCGCGGCAGCGGCGGAA
GCTCTCTGCCGGGCCGGCACCAATCCAGGCCAGGGTCGGTGGTACCGCCG
CCGCCGCCGCTCCGACAACAGCAGCAGATGCAACAGCAGCAGCAAGTGGT
GCTTCACCTCAGGCGGCGTCGGCGGTAGAGGAGAAGGGGAAGGGAGGTAG
CAGCGGTGGTGGTGGTGGCGATGTTGGCGAGGAGCTTTGGATCGTCGGCC
GGATTCTGGAGGATATGGATATACGGCTAGGGGCGAAGCAGGAGAAGCTT
CGGGTGCGCGAGATCGGCGTGATCCAGCGGTACGCGGCCATCATCTCTAC
CCTGGACGGAAGCCTCGAGCTCCGCGAAGGCGACGACTTTTTGGGATGGT
TGCGCTCGCAAGGCTTCGACGACGCAGGTTTCTCCTCCCCCTCCTCGACG
CCTTCCTCCCGATCCACGCCACGCGGCGGCTCTGGTGCGGAGGACGGTGT
GGACACCGCGACGACAGCGAGCGAGAGCAGCGCGAAGAATAGCGGTGGCG
TTAGTGGTAGTGGTGGGGGGGGGGGCGAAGCGATGGAGGGGGCCAAGAAG
CGGGCGGAGCTGGAGGCGTTCCTGTCCGCGGCGTCGGCGAGGCTGAACGC
GCTGGTAGCCGGCAAGGAGGAGGCGCTCTTCGGCGACAGAGGAGAAGAAG
AGGCCGTGGAAGGAAAGGGGAGCGGGGTAGAGAGAGAGAAGGGGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGTCTCGACGAACATGTCAGACGAGGA
CTTGTACCAGGCCAGGCTAGGGGCGCACCGAGCGATGCTGTGCCACTGCA
TCTCGCTCCTCTTGTCGAGCTTGAAGAAGCAGCAGCTTAAAACCGGGCTC
GGGGTGGAGGAGGTGGCGCCGGTGGTGAGATCGTTGTATCTAGCGGCTCC
GGAGGATAGGTTAGGTGCGATATTTCCGCTCTTCGACACGCACGGGGATG
GGCACCTCGACGTCGAGGGCGTCGAGCGCGCGGTGGACGCGGCGATCCTG
CCGGTGGCGGTGGCGGCGGAGCGCTGCTACCTGGCGGCGGCGCGCCCGGC
GCTGGACAAGAAGGCGGCGGCGGTCATGCCGGCCACGATGAAATACGCGC
TGTGGGACGTGCTGGAGGTGCCCGTGAAGCGGCGGTGTTGTTTCGCGTGG
GCGGAGGATCGCAAACAGGTTGGGCCAGACGAGTGGCGGGTCAGCTGGGA
GCAGTTCGCGCCATCGCGAAGAAAGAGTTTCCCGGAGTTCGAGTCTGTAG
CCGAAAATTATGTGGCGGAGTTCAGCAAACGACGGTCGGCGTGGCATGAA
TCGCGCAAGGGACGCAGGGAGGCCATAGTGTACGGCTCGGCCTTGCTGGT
CGGGGTGCTGTTTATCGACAGCTTTTTGAAGATGGTGTGA
back to top