mRNA_P-littoralis_Contig138.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.60.1
Unique NamemRNA_P-littoralis_Contig138.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig138.60.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 5.140e-17
Identity = 83/145 (57.24%), Postives = 95/145 (65.52%), Query Frame = 3 
Query:   27 MEEGIRTPSISRSASVEQLPGAVDHHQQQQHSRNEVKVVKEAIILVHDARRFGVSERGLWHLNRLHSRAVQPRTRPNTSSTPAAAGSVAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWDIGDGDLTLLDANVTVS 461
            ME+GIR+P+ SRS S  +   +VD       +R EVKV++E I+LVHDARRFGVSERGLWHL+RLHSRA QP TR                S  XXXXXXXXXXXXXXXXXXXXXX           +DI D DLTLLDAN+ VS
Sbjct:    1 MEDGIRSPAFSRSTSAGEQ-ASVDE------TRQEVKVIQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQPLTR----------------SAAXXXXXXXXXXXXXXXXXXXXXXSPPSPGHPAGVFDIDDDDLTLLDANLIVS 122
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BLAST of mRNA_P-littoralis_Contig138.60.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-10
Identity = 52/108 (48.15%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  138 VVKEAIILVHDARRFGVSERGLWHLNRLHSRAVQPRTRPNTSSTPAAAGSVAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWDIGDGDLTLLDANVTVS 461
            V++E I+LVHDARRFGVSERGLWHL+RLHSRA QP  R   +                             XXXXXXXX           +DIGD DLTLLDAN+ VS
Sbjct:   30 VIQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQPLARQAVAD-----------KRLYMKLILCKLRAGSGXXXXXXXXSPPAPGHPAGVFDIGDDDLTLLDANLIVS 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHK8_ECTSI5.140e-1757.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE2.900e-1048.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:299696..304554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size679
Hectar predicted targeting categoryother localisation
Exons3
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789637.928209-CDS-P-littoralis_Contig138:299695..3001221680789637.928209-CDS-P-littoralis_Contig138:299695..300122Pylaiella littoralis U1_48CDSP-littoralis_Contig138 299696..300122 -
1680789637.9383-CDS-P-littoralis_Contig138:300882..3009951680789637.9383-CDS-P-littoralis_Contig138:300882..300995Pylaiella littoralis U1_48CDSP-littoralis_Contig138 300883..300995 -
1680789637.9522777-CDS-P-littoralis_Contig138:304417..3045281680789637.9522777-CDS-P-littoralis_Contig138:304417..304528Pylaiella littoralis U1_48CDSP-littoralis_Contig138 304418..304528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789637.9613128-UTR-P-littoralis_Contig138:304528..3045541680789637.9613128-UTR-P-littoralis_Contig138:304528..304554Pylaiella littoralis U1_48UTRP-littoralis_Contig138 304529..304554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.60.1prot_P-littoralis_Contig138.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 299696..304528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.60.1

>prot_P-littoralis_Contig138.60.1 ID=prot_P-littoralis_Contig138.60.1|Name=mRNA_P-littoralis_Contig138.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
MEEGIRTPSISRSASVEQLPGAVDHHQQQQHSRNEVKVVKEAIILVHDAR
RFGVSERGLWHLNRLHSRAVQPRTRPNTSSTPAAAGSVAGGSASSSSGDS
GTPSPSPPRPSPPTAAAAAAAAAAVAAWDIGDGDLTLLDANVTVSGGRSN
RRALPLLSPADQPPTPPTTQSGSRRTVTAATAAATTRLLRNNSGSSCNNA
TTTSEWAGSSCGGGGHG
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mRNA from alignment at P-littoralis_Contig138:299696..304554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.60.1 ID=mRNA_P-littoralis_Contig138.60.1|Name=mRNA_P-littoralis_Contig138.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4859bp|location=Sequence derived from alignment at P-littoralis_Contig138:299696..304554- (Pylaiella littoralis U1_48)
GCTGGAGGAAGTGTAGAGTTTGCGCCATGGAAGAGGGTATTCGTACACCA
TCTATCTCGCGCAGTGCAAGCGTCGAACAATTACCTGGTGCTGTGGACCA
CCACCAGCAGCAGCAGCATTCTCGAAATGAAGTAAAGGTGTGAAGTCAAA
CTGCAACATGGAACAAACCAATGGAACAACACAATATGCATGATGAATGT
TTGAAGGAACAGGAGGGACAGCAGTGTAGACTTGATTATATTCAGAGAAG
GTCGGAGGGAGGTCGTGTTGCAGCACTTCTTCCACCAGCAGCAGCAGCTG
CAGCTTGCACACAGGGGTTGTAGCCTTGCCTCAACACGGACACACACGAT
TTTTTATCCCTTTTGGAAATCTGAAATCTACGTTGTCTCCTCCGTCTCCC
CACTGCTGCTGTGTGCACGTATGATATTAGAGATTTTGGAGCCCTTGTGC
CGCCCGACTTTCTTTGATCTATGATAGATAGCATAGTCAGCACTCCAGAA
AGACAGCAACTGCTGGGTCTGCAGCTTAGCTACTACCTCAAAGGTAATGA
TTGCTTGTCATTTCGTAATAAGTGGGGCGGGAGGAGACTGAACACGCTGT
TGTATTCAAATGAACTACGCTGGATATACGTTTGTTTGCTGTTGGTACTG
CTGTGACTGCTGTAGTTCAGTGATGCACACCAGGTTGGAAGGTGTATCTT
CGGTCCTTCTTGGGTACAATTGTATTCCCTTGTAGTTTCTTTCTGTTTTT
TGGATCTTCCTAGGGCTCAGCACTCTTTGTGACCACGGGCTAGATTTCGG
CGATGAGCTAATGTGAGAAGCAACAACAACAAATATGATACTTGTATCAT
CAAACGTTCCTGAAATCCTACAGCAGTAGTCCGAGAGACAATCATTTCCG
TCGTACCGTAAGGTGTACCAGGCACTCTGTTGTTGGTTGCTAGCGGAGAG
CTGCATTTACACTTCAGCGAGGGGTCGTAGAGCGGCACTGCAAATGATGA
CATCGGCATTCACATGATATGTACTTGTAGGACTGCTGAACTGCTTGCTG
TGCTGTAGAGCGAGAAACAGGCAGAAGTGCGCAGCATACGCAATGTGCAT
TGTTGACAGTCCCGCGGGTCTTGATAATAACCACACCCAGGACATTAGAC
AATGTTCAATTGCTACTGCTATTGTTTCCACTATAATGTGTGTGTTGTCG
TCCCTTCAATTGGACGCCACTCTACACCTTTCGGGTAGGTCGACGCTCCA
ACTGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTTTTTTTTCT
CCACTTCCCTCTGCGGTGCTAGCCTTGTTTGGTTGAGCTTTTATCGCGAG
AAAGGGGACAGCAATCCCTTTCCCTCGTCGAAGGTACGATCGAATTTTGG
TTTACTCACGAATTAATCGCTTTCCACTTTCACGCGCATTGTGAGAAGAA
AACCATAATGGACGCCATTATTGTCCTCGGAAATAGCTATTGATTGATAG
GTTTCTATGGTCCGTGCTCAACAATTTGTCCAATCACGTTTTGTGCGATA
ACTTTTGTTACGGGAAGATTTGGAACGTGAAACAACAATAGTCGTGACCG
CCTCGAAATTCTACGTCGACAGCTGCAGAGTTTATTTCATTCTGGCGAAA
TGCAACATGTTGGGCCACATTCAACCACGGGGCCCCTAGTACCCCCCATG
CCCACCTATACATGTCACGGGGCCCCCAAATCACACCCCGCACCCCCGAG
ATTTGTAGCATTCACGGTGACTTGACTACACATTTTGCATCGATACATAT
TAAACGAACCACAACCACCACCACCAACATCAACATCAACATAGCAGAAG
AAACCACCACCACCACCGCCACCACCACCAACGACAAGAACACACGCTCG
AATTCTATTAGTTGTTGCGCGACCTCCGCAAACGGCAATCTATGATAGAA
TTCATGTTGTTGTGGTGTAGGGGCGTTGGAAACCACTTGGCCACCAGGTC
CCCGCAGACAGATCCTCTTCTGAGGCCGTGGCATGTTGCTTGCGTGTGTT
CGTTGTGGCTAGCGTATGTGGTGATGTGGTGTGTGTGCACAGCTTCACGT
GTGCGCACTGCTTTTCATCTTTTTTTCTCCCAGCAGGACGGCACAACAAA
ATTTCGATTTTCTCCACAACCAGAGTTTTCCCGGGAAAAAGAAAAAAAAA
ACGTCTTGGGATTGATGAGAGGAATCGTTTGCCGTGGTCTATTTTTAAAT
CGTTCGGTCATTTATCTCAAATAAAAGATTACAAGTTGACCCTCTAGATC
CGGTATTTCGGCGATATCGTCGTCAATTTCAAAAATTTCCAAAAAAAAAA
AATGCCGACTGGCAAATTCCGAGATCTGTCCAAATTCGTTGAGTTTTTCG
AAATCGGCAAATAACATGGCCCAGAAAAAAGAAAACAAGTTTGTCCTGTT
TTTCGCCGATAAAAAGTCGCTTTAGAAAAAAAAAAAAAAATCTCCGCCAC
GAGATGCGCCTGGAGACGGGGCATTTGCCGGTACTTTCAGATTTCGGAAC
AACCGCCTGTGTGCAGAGAAAAAAGTGTACCTGGGTGCTGGGGAAATTTT
GGAAATATTGTTGAGCACGGACCATACATCCATTGTCTTCGGACATGCCT
GTCGATAGAAGCCTTTTCCATGCGAATCCCCGCGACCTAATACATCGATA
CCTGGAGTACCTGACCTATTGTTTGCGATAATGAATATTGATGGAAAACT
TGGATGATCAATTGTTGACGGCAATGGCCATCGATGGAAGTCTTGTCAAA
TATAGTGTGAACGACAATGTTCATCGATACACGCATCCTGAAACGCATCG
CAAAACATAACGTCTATCGATACATGCATTCAGGGTGGTTTGTGTGGATA
CGATGTGCTTATACCCTGGACAATAGACGGTGTAACGAAACACTGCCGCC
GCAATGGCCCCGAGAATTTGAGCGTCGATGGCCATTTGTCGGCTACGAGG
CATTGGCATCGGTGTCTATCGAAATACATTGGAGGTAACAATAGATTTGG
GAACAATGGATACAATATGTCTTTGCCGTCACAATGGAGTGGGCAAGTTC
TCGATCAATATACGCCGTGCGTTGCAGTAGACTACTGTATACTCTTGCAC
ACATCAATGGCCATTGGTAGACACAATGGGACTTCATCCGCGTCCATCAA
TAGCCATTGTCGTGCCCAATGTGTTCTGACGCGTGTCTATCAATGGATTT
TGGATTTTGTCGGCCACAACAATACTGTCTGTGGGTGTGCCACGGGGGTC
GCGATCCCTTGCCGCGCAGAGAAGCAGTGCTGATGGATGTGTGTTGATTT
TGAGTGGATGGTGGGCGGCAGCAGCAGCCACACGGATGATTTTTGAACCA
GATTTGTATCAATGTTCATATTTATTCGAGTAGATCATCCACACCTGTTT
CGATGTTGGCAGTCCCGCTTACAGATCCGCCGTCTTCGTTGTTGTTGTTG
TCGTTCTTCTTCTTCTATCTCCTTTCTTCTTCTTCTTGTGGCCGACAACC
GACAAAAAGGTGGTAAAGGAGGCGATCATCCTCGTGCACGATGCGCGCCG
CTTCGGGGTGAGCGAGAGGGGGCTCTGGCACCTCAACCGCCTGCACTCCC
GTGCCGTGCAGCCGCGAACAAGGTGGGGCGGTGCCTCCTGCTGCACTGCT
GCTGTATGGTAGTTATGATAGTACATTGCATGCAGGGCACCCTGTGAGAA
ATAATTTCATACGAACGAATTACACCGAGTGCATGAAATAACGCTAGTGT
ATACTGTAGTAGCGGGAAGCTCTCTGAGAAGTTGGATTTGTTTGCCTCCG
AGAAATTGGTTTGGTTTGAGAAAACATCCGTGGTATGATACTTGTGATGG
TTTTGAACAGGGGAGGGGGCGAAACCCAACAACAGCGGCGGTCAGTTTCA
CAGAATTTTGCGCCAGATGCAGCAGAGGTGCAGGACACTCGAAATAGTTC
CTTTTCAAGAAACTCGAGCTGGATTTGACTTAAAGGTCTCTGAAACAAAC
CGCCGCTGGGATTGCCCCCCCCCCCTCTATCCCCTCGTTTTCTCCACCAG
GCTTCCGAAACAAAGGCTGCGTGTTGCTTGCACTCCCCTGTTCAAAACCA
TAAACAACTCCGTATTAACATACCTGGCAGATATGTATATTGAACTGAAA
CCATCGTTTACACTAGACGGCGACGAGTGCTGCTCATTCTGAAAACAGGA
GTTTTGTTTTTGGCCATGGAATATGAACGCGCTTTGTACACGGCGTTGTC
CTTTTGTATCCACTCCCCCCCCCCCCCCTAGCCCTCCGTAGCTACCCCGG
TTACCCAACCTTCGCTGACCTCGCACACTTCTCGCTCATTTTGCGACGAT
GCCCGCCCTCCTCCGTTGTCCCAACCCAAAAGACCGAATACATCCTCCAC
GCCAGCAGCTGCTGGATCCGTTGCCGGCGGCAGCGCTTCTAGTAGTAGCG
GCGATTCTGGGACACCTTCCCCTAGTCCGCCGAGGCCATCGCCGCCGACG
GCGGCGGCCGCGGCAGCGGCAGCGGCCGCAGTCGCGGCCTGGGACATCGG
TGACGGTGATCTCACGCTGCTGGACGCCAATGTTACGGTCAGCGGCGGCA
GGAGTAACAGGCGCGCCCTGCCACTGCTGTCCCCGGCGGATCAGCCGCCC
ACGCCGCCGACAACGCAGTCGGGATCGAGGCGAACGGTGACTGCAGCCAC
GGCCGCAGCCACGACGCGGCTTCTGCGGAACAATAGCGGTAGTAGCTGCA
ACAACGCGACCACGACGTCCGAATGGGCCGGTAGCAGCTGTGGCGGTGGG
GGACACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:299696..304554-

>mRNA_P-littoralis_Contig138.60.1 ID=mRNA_P-littoralis_Contig138.60.1|Name=mRNA_P-littoralis_Contig138.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig138:299696..304554- (Pylaiella littoralis U1_48)
ATGGAAGAGGGTATTCGTACACCATCTATCTCGCGCAGTGCAAGCGTCGA
ACAATTACCTGGTGCTGTGGACCACCACCAGCAGCAGCAGCATTCTCGAA
ATGAAGTAAAGGTGGTAAAGGAGGCGATCATCCTCGTGCACGATGCGCGC
CGCTTCGGGGTGAGCGAGAGGGGGCTCTGGCACCTCAACCGCCTGCACTC
CCGTGCCGTGCAGCCGCGAACAAGACCGAATACATCCTCCACGCCAGCAG
CTGCTGGATCCGTTGCCGGCGGCAGCGCTTCTAGTAGTAGCGGCGATTCT
GGGACACCTTCCCCTAGTCCGCCGAGGCCATCGCCGCCGACGGCGGCGGC
CGCGGCAGCGGCAGCGGCCGCAGTCGCGGCCTGGGACATCGGTGACGGTG
ATCTCACGCTGCTGGACGCCAATGTTACGGTCAGCGGCGGCAGGAGTAAC
AGGCGCGCCCTGCCACTGCTGTCCCCGGCGGATCAGCCGCCCACGCCGCC
GACAACGCAGTCGGGATCGAGGCGAACGGTGACTGCAGCCACGGCCGCAG
CCACGACGCGGCTTCTGCGGAACAATAGCGGTAGTAGCTGCAACAACGCG
ACCACGACGTCCGAATGGGCCGGTAGCAGCTGTGGCGGTGGGGGACACGG
G
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