mRNA_P-littoralis_Contig1005.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1005.16.1
Unique NamemRNA_P-littoralis_Contig1005.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 4.810e-142
Identity = 226/261 (86.59%), Postives = 233/261 (89.27%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEV 783
            DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKA FEDATRLFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA        G        +  ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEE 
Sbjct: 1311 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEA 1569          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 7.760e-128
Identity = 191/224 (85.27%), Postives = 198/224 (88.39%), Query Frame = 1
Query:  139 LFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            LFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA        G        +  ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct:   52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.090e-103
Identity = 155/166 (93.37%), Postives = 160/166 (96.39%), Query Frame = 1
Query:  313 RLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct:  282 KVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 3.730e-103
Identity = 182/270 (67.41%), Postives = 186/270 (68.89%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKA FEDATRLFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA        G        +  ++ LSKNLYQQVGL                                                          DGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct:  234 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGL----------------------------------------------------------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 443          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 5.470e-103
Identity = 155/163 (95.09%), Postives = 158/163 (96.93%), Query Frame = 1
Query:  322 LSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct:    2 LSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00077A236B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A236B)

HSP 1 Score: 195 bits (496), Expect = 5.050e-57
Identity = 111/271 (40.96%), Postives = 163/271 (60.15%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQD-GGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            +Q  F  LL R R G   +EDW LLL RQP+ +     + F+DATRL+YS  EV  YN ++L +L  P+A ++A H++A A+    +E             +  ++ L+ NL+  VGL NG  G +++L+Y  +  PP LP+ V+V F  YSG   S  +    CVPI PV  + Q   G   R QLPL L +A+T+HKSQG T++KA ID+G  E   G+++V +SR+K L   +VEP +F+R+ +L +S+T+K RL EE RL +LA +T
Sbjct:   85 EQEQFRNLLLRLRKGDSTNEDWQLLLTRQPSNIK--NLSQFDDATRLYYSNIEVATYNHEQLTKLQQPIANINARHSSAIAKNISSEEMS--NLEPTVFLAKGAKVMLTMNLWSSVGLCNGATGTILDLIYESNHQPPDLPIAVIVHFNDYSGP--SISDTLPSCVPICPVTVSIQSLDGHHERQQLPLKLAYALTIHKSQGLTMSKAWIDIGKSEKTPGVSYVAISRVKTLSSCVVEPMTFERLTSLKSSATLKYRLDEEARLDKLAHAT 349          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00077A905F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A905F)

HSP 1 Score: 197 bits (501), Expect = 4.610e-56
Identity = 112/271 (41.33%), Postives = 162/271 (59.78%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQD-GGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            +Q  F ELL R   G   ++DW LLL RQP    A    +F+DATRL++S +EV  YN ++L  L +P+A V+A H++  A++A   E    G        +   + L+ NL+  VGL NG  G V++ +YA++  PP LP  V+VKF  Y G   S  E    CVPI P+  + Q   G   R QLPL L WAIT+HKSQG TL KA ID+G  E   G+++V +SR++ L   ++EP +F+R+ ++  S+++K R++EE RL ELA+ T
Sbjct:  262 EQSQFRELLTRLHTGDCTEQDWKLLLTRQPTN--APNLVEFQDATRLYFSNEEVANYNVEKLSALQHPIACVNAHHSSDLAKKASPDEMA--GLEPCIFLAKGAHVMLTLNLWTAVGLCNGATGTVIDFIYANNQQPPDLPEAVIVKFDNYRGP--SITESISSCVPICPITVSSQTLDGLHERQQLPLKLAWAITIHKSQGLTLPKAWIDIGQTERTAGISYVAISRVRTLSSCIIEPMTFERLKSIKKSASLKFRIEEEERLNELAEQT 526          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6S7JIW3_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JIW3_PARCT)

HSP 1 Score: 200 bits (509), Expect = 7.150e-55
Identity = 116/271 (42.80%), Postives = 160/271 (59.04%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            DQ  F  +L R R G+L   DW LLL RQP  L+     DF DATRL+YS  EV  +N   L +L+ P+A + A H+ +NA+    QE    G +      +  ++ L+ NL+  VGL NG  G +V+++YA D  PP LP+ V+VKF  Y G ++ S      CVPI PV  +   D  T  R QLPLTL WA+T+HKSQG TL KA +D+G KE   G+T+V LSR + L  L++EP ++DR+ ++    ++  RLQEE RL  +A  T
Sbjct:  852 DQTLFKGILSRLRIGELSCNDWKLLLARQPTVLSNLN--DFIDATRLYYSNDEVAKFNYDHLMQLETPIAEICARHSGSNAKSVSAQEMF--GLQPTILICKGAKVMLTMNLWASVGLCNGASGTIVDIIYAKDHHPPDLPIAVLVKFDEYRGPNFCS---IPFCVPIPPVTASVNIDNKTLERQQLPLTLAWALTIHKSQGMTLEKAWVDIGKKECTLGITYVALSRARNLTSLVIEPMTYDRLSSIKKMQSLSYRLQEEKRLQVIANLT 1115          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A)

HSP 1 Score: 199 bits (507), Expect = 1.550e-54
Identity = 111/270 (41.11%), Postives = 163/270 (60.37%), Query Frame = 1
Query:    1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            +QR F +LL   R+G +   DW++LL RQP  +T  +  +F+D TRLFYS +EV  YN  +L EL +P+A++ A H+   A++   QE    G   +    +   + L+ NL+  VGL NG +G V++++Y  D  PP LP+ VVVKF+ YSG    S + +  CVPI P+ T   D     R Q+PL L WA+T+HKSQG TL K  ID+G +E   G ++V +SR ++L  L++EP + +R+ N+  S  MK R  EE RL +LA +T
Sbjct: 1471 EQRIFRDLLKHIRNGCISTSDWNVLLTRQPTSITNLD--EFKDVTRLFYSNEEVGKYNFSKLEELKHPIAKIEARHSTIKAKKISPQELF--GLEPLLFLAKGAVVMLTNNLWTSVGLCNGAKGTVMDIIYHPDHKPPSLPIAVVVKFESYSG---PSLDNFPSCVPIPPI-TACVDS-IHERQQIPLRLAWALTIHKSQGLTLDKTWIDIGKRETSLGTSYVAISRTRKLSSLVIEPMTLERLLNINKSPNMKYRKAEEQRLSDLANNT 1731          
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.740e-54
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 1
Query:  526 QDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810
            +DGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct:    8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L976_9PHAE4.810e-14286.59ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JUS2_9PHAE7.760e-12885.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE1.090e-10393.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J8Y8_9PHAE3.730e-10367.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U7_9PHAE5.470e-10395.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00077A236B5.050e-5740.96ATP-dependent DNA helicase PIF1-like n=1 Tax=Acrop... [more]
UPI00077A905F4.610e-5641.33ATP-dependent DNA helicase PIF1-like n=1 Tax=Acrop... [more]
A0A6S7JIW3_PARCT7.150e-5542.80ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
UPI00109BC70A1.550e-5441.11uncharacterized protein LOC110236158 n=1 Tax=Exaip... [more]
A0A6H5KSF1_9PHAE2.740e-5494.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1005contigP-littoralis_Contig1005:72606..73415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size810
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.72e-27
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size456
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.0107687-CDS-P-littoralis_Contig1005:72605..730611680789346.0107687-CDS-P-littoralis_Contig1005:72605..73061Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 72606..73061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.0228438-UTR-P-littoralis_Contig1005:73061..734151680789346.0228438-UTR-P-littoralis_Contig1005:73061..73415Pylaiella littoralis U1_48UTRP-littoralis_Contig1005 73062..73415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1005.16.1prot_P-littoralis_Contig1005.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1005 72606..73061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1005.16.1

>prot_P-littoralis_Contig1005.16.1 ID=prot_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPI
SPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACT
GLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQ
ST
back to top

mRNA from alignment at P-littoralis_Contig1005:72606..73415-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1005.16.1 ID=mRNA_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig1005:72606..73415- (Pylaiella littoralis U1_48)
GACCAGAGAGGCTTCATCGAACTGCTGCCGCGTGCGCGTGATGGACAGCT TTGCGACGAGGACTGGGACCTCCTCCTGAAGAGACAGCCCAACCGCCTGA CCGCCGCCGAGAAAGCGGATTTCGAGGACGCAACGAGGCTCTTCTACTCC AAGAAAGAGGTTAACATGTACAACGGGAAAAGACTCCGGGAGCTGGACAA CCCCGTCGCTCGTGTTAGCGCCGTCCACACAAACGCGAACGCCAGGAGGG CAGGGCGACAGGAGACACCGCGGAGGGGCTGGAGAGGGATCTCTACTTAG CCAAGGGAGCGAAGGTTATGTCTCTCGAAAAACCTGTATCAACAAGTTGG GCTGATGAACGGCATTAGAGGCGAAGTCGTCGAGTTGGTGTATGCAGACG ATGCGCCCCCGCCGAAGCTCCCCCTTTACGTTGTCGTCAAGTTCAAAGGG TACTCGGGGGGGGACTGGTCGTCTCAGGAGAGGTATAGACGTTGTGTCCC TATTTCTCCCGTCGACACCACGTGGCAGGACGGGGGGACGCAGGTCAGGA CGCAGCTGCCCCTTACGCTCTGCTGGGCAATTACGATGCACAAGTCCCAG GGGCAGACTTTAGCCAAGGCCGTCATAGACTTGGGGCCCAAGGAGGCCTG TACGGGGCTTACTTTCGTCTGTCTCAGTAGGCTGAAGAGACTTGTGGACC TAATGGTAGAGCCCACGAGTTTCGACAGGATTGGTAACCTTGGAAATTCG TCGACGATGAAGGCTAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGC ACAGAGTACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1005:72606..73415-

>mRNA_P-littoralis_Contig1005.16.1 ID=mRNA_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig1005:72606..73415- (Pylaiella littoralis U1_48)
ATGAACGGCATTAGAGGCGAAGTCGTCGAGTTGGTGTATGCAGACGATGC
GCCCCCGCCGAAGCTCCCCCTTTACGTTGTCGTCAAGTTCAAAGGGTACT
CGGGGGGGGACTGGTCGTCTCAGGAGAGGTATAGACGTTGTGTCCCTATT
TCTCCCGTCGACACCACGTGGCAGGACGGGGGGACGCAGGTCAGGACGCA
GCTGCCCCTTACGCTCTGCTGGGCAATTACGATGCACAAGTCCCAGGGGC
AGACTTTAGCCAAGGCCGTCATAGACTTGGGGCCCAAGGAGGCCTGTACG
GGGCTTACTTTCGTCTGTCTCAGTAGGCTGAAGAGACTTGTGGACCTAAT
GGTAGAGCCCACGAGTTTCGACAGGATTGGTAACCTTGGAAATTCGTCGA
CGATGAAGGCTAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAG
AGTACA
back to top