mRNA_P-littoralis_Contig138.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.52.1
Unique NamemRNA_P-littoralis_Contig138.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:235536..237659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size659
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.5682704-CDS-P-littoralis_Contig138:235535..2357901680789635.5682704-CDS-P-littoralis_Contig138:235535..235790Pylaiella littoralis U1_48CDSP-littoralis_Contig138 235536..235790 -
1680789635.5778348-CDS-P-littoralis_Contig138:237255..2373421680789635.5778348-CDS-P-littoralis_Contig138:237255..237342Pylaiella littoralis U1_48CDSP-littoralis_Contig138 237256..237342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.5890164-UTR-P-littoralis_Contig138:237342..2376591680789635.5890164-UTR-P-littoralis_Contig138:237342..237659Pylaiella littoralis U1_48UTRP-littoralis_Contig138 237343..237659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.52.1prot_P-littoralis_Contig138.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 235536..237342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.52.1

>prot_P-littoralis_Contig138.52.1 ID=prot_P-littoralis_Contig138.52.1|Name=mRNA_P-littoralis_Contig138.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MADAQGTRGDEHSIRPLPRPLTDVSSQDKFEASWSTLLTTAGSCKQLERL
SEVQVTSLVQDIRRILAELVRLSSVDTSLSRQRVFVANLEAGVEHSICWG
DRQTLQLCSCTMS*
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mRNA from alignment at P-littoralis_Contig138:235536..237659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.52.1 ID=mRNA_P-littoralis_Contig138.52.1|Name=mRNA_P-littoralis_Contig138.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2124bp|location=Sequence derived from alignment at P-littoralis_Contig138:235536..237659- (Pylaiella littoralis U1_48)
TAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAG
TGAGCTAATGTGAGAATCAACAACAACAACAACCTCTGGCGGTGCGAAGA
CCACGGCGAGCTCCGCGTGGGACAGGGTTTCCTGATCCTGCCAACCGCTC
ATCCGGAAACGAAGGTGGGTCGCCCTCTCGCCGGCACCTCTTCTGGGGGA
GGCCCCTCCATCGCCGGCGGCAGCGCGGTGAACGCGGAGCCATCCACGGG
ACGCTTGTCCAAGCGCCCTATCGACGTCCTGGACGACTCCGTCGGCGAGC
TGGCGGACACCTCCAGCATGGCGGATGCGCAGGGCACTCGCGGCGACGAA
CACTCGATCCGGCCACTTCCGCGGCCCTTGACCGACGTATCATCCCAGGA
TAAGGTGAGATTGAAATTTGATTGCTGAGACGGCCCTTCATTTGTGCAGA
CATGCATTTTTTTTGTTTCCAGCTCCGAGAGTAGCTTCGTTCGTTCGTCT
CCCTTTCCTCTGCCTCACAGACCTCTGCTCTTGCCCGAGGCAGCCCTTGT
GCTCCCAATTGTGGACCGCTTCCCCTCTCGTGCGCGGGTTTCCCTTTTCC
CTTTGTCCTAACAACAGCGTCACGGGCCGTGTGTGATTCTCGTTTACTTT
GTCTGTCTCTCTCGTTTTCTGGTCAACTTTCCCAGCTTTGCCGAATTGTA
CATCAGTAGCTTTTTCCATGACGTATACTTTTAGTTGTATGATATCGTAT
ACACATACACCCGCAGCCTTGCCCGTGCATGCGGGGTTGGATGAAAGTGT
ATTGTTCTGACGTACTATTCTCGTTGTACGCAGCCCCTTTTGGTACATGC
CGGTTATGGAAGTGCTTTGTTCTGCTTCTCGCCTCCACGGCTGTACGCAG
CTCCTTCTGTGCTCTGTACGCCTCGATCCGGGTCCAAGCAAGGACAGACT
CCGTTTCTGCCTCTGTTTCCCTTTCACAGCGTCGGCGGGCACACCGTATT
TATTTTTTCCGAATTTTCTTTGCGATGCGGCACGTACTTGGGCTCCATGG
CGTGTGTTCTCCTTGTTGACCTGCTACCCGGCTTCGCGCCAGCATCTCTG
TTTTCAGACGCTGGTGTCGTGTTCGTACTCTCCGTGTTCGAAATATCGTA
TCTTTGTTTTTTTTGCCATGATGCTCTGTCGGTGCACGTTCTATCTGCCC
GCTTGCTCGCCAAAAAATTGTTTTCCTTCATTGCTGTTCTTCTGCTCACA
CGGTTCATTCACAGCACCCGTGCATAGCCCGCTCCAGAAAATGTTTTCCC
CTTCCATTGTCCGCCTGTTCACGAATTTTCGTTTGCAGTACCCGCGTTCA
AGCCCGTTGCGGAGGGTCTTTTATTTTTTATCTTCACCGTCGGTTCACGC
TCTGGAGGAAACGCTCGATTTTTCTCACGTTTTTCGTTGCCACAGACTCT
TTCTGGCCGAGTCTCGCTCACGCTCGCTGTTTTTCGTTCACCCCCCCCCC
CGTTCTCGGACACACATGTTTGCCGACAGGGTCCCCACGTACAGCTTTCG
TTTGGTTATTACAGTTCCGGGACACGCCTGTTCGCAAACAGTGTGCCCAT
GTACGATTTCACTCTGGCCCTTTCAAAGTTCCGCGGTTGCTCTCCGCCCG
ACATCGCCATGCTCTTCGCTCATATCCGTTCCGTCCAGACCCTTTTCATA
GTGGCCGTTCTTTCACGACAAGTTCCATCCGGCGTATGCTCGGCCTCGCC
CATTTGGTTTTACCAGCGTGGTAAAACTCTGCTCGCTCTGTGTTCCACGT
GCTCACAAATACGTTTACGCTCCCGCCGACGCTTCGGTTTGCCTTTCCGT
CTCGCTCACATTTTCGTAGTTTGAAGCGTCATGGTCCACGCTCCTGACCA
CTGCTGGCTCGTGCAAACAGCTCGAACGCTTGTCCGAGGTTCAAGTGACC
TCCTTAGTGCAGGATATTCGGCGCATTTTGGCCGAGCTGGTTCGGTTGTC
TAGTGTGGATACCTCTCTATCGCGACAGCGCGTGTTCGTGGCAAATTTGG
AGGCTGGCGTCGAACACAGTATATGTTGGGGGGACCGGCAGACGTTGCAG
CTATGTTCGTGCACGATGAGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:235536..237659-

>mRNA_P-littoralis_Contig138.52.1 ID=mRNA_P-littoralis_Contig138.52.1|Name=mRNA_P-littoralis_Contig138.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig138:235536..237659- (Pylaiella littoralis U1_48)
ATGGCGGATGCGCAGGGCACTCGCGGCGACGAACACTCGATCCGGCCACT
TCCGCGGCCCTTGACCGACGTATCATCCCAGGATAAGTTTGAAGCGTCAT
GGTCCACGCTCCTGACCACTGCTGGCTCGTGCAAACAGCTCGAACGCTTG
TCCGAGGTTCAAGTGACCTCCTTAGTGCAGGATATTCGGCGCATTTTGGC
CGAGCTGGTTCGGTTGTCTAGTGTGGATACCTCTCTATCGCGACAGCGCG
TGTTCGTGGCAAATTTGGAGGCTGGCGTCGAACACAGTATATGTTGGGGG
GACCGGCAGACGTTGCAGCTATGTTCGTGCACGATGAGCTGA
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