mRNA_P-littoralis_Contig1379.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1379.9.1
Unique NamemRNA_P-littoralis_Contig1379.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1379.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1379contigP-littoralis_Contig1379:22909..23327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size419
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.422113-CDS-P-littoralis_Contig1379:22908..232351680789635.422113-CDS-P-littoralis_Contig1379:22908..23235Pylaiella littoralis U1_48CDSP-littoralis_Contig1379 22909..23235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.4322178-UTR-P-littoralis_Contig1379:23235..233271680789635.4322178-UTR-P-littoralis_Contig1379:23235..23327Pylaiella littoralis U1_48UTRP-littoralis_Contig1379 23236..23327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1379.9.1prot_P-littoralis_Contig1379.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1379 22909..23235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1379.9.1

>prot_P-littoralis_Contig1379.9.1 ID=prot_P-littoralis_Contig1379.9.1|Name=mRNA_P-littoralis_Contig1379.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MNPFSLAFVLFGRPAGEQEDVDLKCKVSGGGETGAAATAAVEPGGAGVGS
AAKVHGLGRHDLANLDGAGGGAAGQQSRAAAKKERYVANSEENRAERVRP
PLSLGPRP*
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mRNA from alignment at P-littoralis_Contig1379:22909..23327+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1379.9.1 ID=mRNA_P-littoralis_Contig1379.9.1|Name=mRNA_P-littoralis_Contig1379.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=419bp|location=Sequence derived from alignment at P-littoralis_Contig1379:22909..23327+ (Pylaiella littoralis U1_48)
ATGAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGA
GCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCGAGACGG
GCGCGGCAGCAACTGCCGCGGTCGAACCAGGGGGTGCGGGCGTTGGTTCT
GCGGCGAAAGTCCATGGGCTGGGcAGGCACGACCTGGCCAACCTGGATGG
GGCCGGGGGCGGGGCCGCCGGTCAGCAAAGTCGCGCGGCAGCTAAGAAGG
AGAGGTATGTAGCGAACTCAGAGGAAAATAGGGCGGAGAGAGTAAGGCCA
CCGCTAAGTTTAGGGCCGAGGCCTTGAAGGCCATGACTGcCCCCGCCCAA
TCTTCGGAGAGCTCGAAGAGACTGGCCCTTAGCGTGGAAACGCTCACCAG
GACTCCCGTGCCGAGGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1379:22909..23327+

>mRNA_P-littoralis_Contig1379.9.1 ID=mRNA_P-littoralis_Contig1379.9.1|Name=mRNA_P-littoralis_Contig1379.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1379:22909..23327+ (Pylaiella littoralis U1_48)
ATGAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGA
GCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCGAGACGG
GCGCGGCAGCAACTGCCGCGGTCGAACCAGGGGGTGCGGGCGTTGGTTCT
GCGGCGAAAGTCCATGGGCTGGGcAGGCACGACCTGGCCAACCTGGATGG
GGCCGGGGGCGGGGCCGCCGGTCAGCAAAGTCGCGCGGCAGCTAAGAAGG
AGAGGTATGTAGCGAACTCAGAGGAAAATAGGGCGGAGAGAGTAAGGCCA
CCGCTAAGTTTAGGGCCGAGGCCTTGA
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