mRNA_P-littoralis_Contig1378.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1378.9.1
Unique NamemRNA_P-littoralis_Contig1378.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-19
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARAR 246
            NL STAIRTFAGAGE QSRAQV+K+ A V    A+EA+RQKRLAQ  Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +R
Sbjct:  334 NLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESR 415
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.750e-9
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 225
            +L S+AIR FAGAGE QSRAQVKKE AAVA   A E  R+ + A T  L  AV +LS +V +++ LDEEAA RAR
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRAR 137
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-8
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 225
            +L S+AIR FAGAGE QSRAQVKKE AAVA   A E   + + A T +L  AV +LS +V +++ LDEEAA RAR
Sbjct:   63 DLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 137
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQ---TSQLAQAVVSLSESVAAKRVLDEEAAVRAR 225
            +L S+AIR FAG GE QSRAQVKKE AAVA   A E   Q R  Q   T +L  AV +LS +V +++ LDEEAA RAR
Sbjct:  189 DLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.280e-7
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 225
            +L S+AIR FAGAG+ QSRAQVKKE AAVA   A E  R+ + A T +   AV +LS +V +++ LDE+AA RAR
Sbjct:  246 DLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRAR 320
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.650e-7
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 225
            +L S+AIR FAG GE QSRAQ+KKE A VA   A E  R+ + A T +L  AV +LS +V + + LDEEAA R R
Sbjct:  150 DLSSSAIRMFAGTGEIQSRAQMKKEHAVVAAANAQEQARRVQQAHTGKLVTAVGALSAAVVSMQALDEEAAHRGR 224
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BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.820e-6
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    4 LDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAA 213
            L S+AIRTFAGA E QSRAQVK E  AVA   A E  R+ + A T +L  AV +LS +V +++ LDE+AA
Sbjct:  165 LSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAA 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1378.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.020e-1969.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JU95_9PHAE4.750e-958.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M7_9PHAE1.260e-857.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE1.060e-756.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGS6_9PHAE1.280e-754.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE8.650e-753.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE1.820e-654.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1378contigP-littoralis_Contig1378:14661..14906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.3043664-CDS-P-littoralis_Contig1378:14660..149061680789635.3043664-CDS-P-littoralis_Contig1378:14660..14906Pylaiella littoralis U1_48CDSP-littoralis_Contig1378 14661..14906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1378.9.1prot_P-littoralis_Contig1378.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1378 14661..14906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1378.9.1

>prot_P-littoralis_Contig1378.9.1 ID=prot_P-littoralis_Contig1378.9.1|Name=mRNA_P-littoralis_Contig1378.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
NLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLA
QAVVSLSESVAAKRVLDEEAAVRAREVAARAR
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mRNA from alignment at P-littoralis_Contig1378:14661..14906-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1378.9.1 ID=mRNA_P-littoralis_Contig1378.9.1|Name=mRNA_P-littoralis_Contig1378.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1378:14661..14906- (Pylaiella littoralis U1_48)
AACCTCGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGCGAGGCTCA
AAGTCGAGCTCAAGTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACGTTG
CCTCGGAGGCCTATCGCCAGAAGAGACTGGCGCAAACCTCTCAATTGGCG
CAGGCCGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTAGA
TGAAGAGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1378:14661..14906-

>mRNA_P-littoralis_Contig1378.9.1 ID=mRNA_P-littoralis_Contig1378.9.1|Name=mRNA_P-littoralis_Contig1378.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1378:14661..14906- (Pylaiella littoralis U1_48)
AACCTCGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGCGAGGCTCA
AAGTCGAGCTCAAGTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACGTTG
CCTCGGAGGCCTATCGCCAGAAGAGACTGGCGCAAACCTCTCAATTGGCG
CAGGCCGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTAGA
TGAAGAGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGT
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