mRNA_P-littoralis_Contig1377.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1377.18.1
Unique NamemRNA_P-littoralis_Contig1377.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1377.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1377contigP-littoralis_Contig1377:23111..25277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.1800947-CDS-P-littoralis_Contig1377:23110..232081680789635.1800947-CDS-P-littoralis_Contig1377:23110..23208Pylaiella littoralis U1_48CDSP-littoralis_Contig1377 23111..23208 -
1680789635.190084-CDS-P-littoralis_Contig1377:25153..252771680789635.190084-CDS-P-littoralis_Contig1377:25153..25277Pylaiella littoralis U1_48CDSP-littoralis_Contig1377 25154..25277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1377.18.1prot_P-littoralis_Contig1377.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1377 23111..25277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1377.18.1

>prot_P-littoralis_Contig1377.18.1 ID=prot_P-littoralis_Contig1377.18.1|Name=mRNA_P-littoralis_Contig1377.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MGFLKWLDETANFTNLPSWLDKDIMGRNAFGPDILDKAKADGTKGVLFDE
SALTLWRGKFQDTACHIRGVWNPI
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mRNA from alignment at P-littoralis_Contig1377:23111..25277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1377.18.1 ID=mRNA_P-littoralis_Contig1377.18.1|Name=mRNA_P-littoralis_Contig1377.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2167bp|location=Sequence derived from alignment at P-littoralis_Contig1377:23111..25277- (Pylaiella littoralis U1_48)
ATGGGCTTCCTCAAGTGGTTGGATGAGACGGCCAACTTTACGAACCTCCC
ATCCTGGTTGGACAAGGACATTATGGGGCGCAACGCGTTCGGACCAGACA
TACTGGACAAGGCCAAGGCCGACGGTGAGATGGGCTTGGCGGGCACGGCG
TACATGCGTTTTTGCAATTTTGCCCCTCTGCTGCAGAGAGATCTACATGA
GCCGCTGTGGAAAATCGCAGCCGCCAGGCGTATAAGTTTGTCGAGTCTGA
TGTAGCTCGGACTGCGATAAACAATGCGAAGATCAAGTACAGCAGGAGTA
CAGCAGTAATGTTGTTGTGGCCGCTGGTTTGGCGGCGGTGTCAGACCATC
CTCCCTCCGAGATGGATCCAGTTTACGTTCAACCGCTGCCTCTCGAGCAT
AACCGCAGGGAGTTGACGTGTTCACGGTGTGGCGTCGGTATACTGCGCAC
GATACCCAGCTCGCATTGCGGCATTGATCGCGACACGGAGCGCTCTTCGG
CCGCTTACATCCCTTTCATAAAAACAGCATCACGAAATGGTAGCAGCAGA
CGTACCAGTGGGTTGGGGTTGAGACGCAGTGTGCGTTGGAGGGCCACTTC
TCAAATAACTGCGTTGAGCCGTGTGCGTAGCTGTTTTGTGGAGTATAATA
TGCCTACTGCTTCACAGCAGTGCTGCTGCTGCAGAACAGCTGGTGATGTG
TTGGCGGTGTGTGCGTGTGCGCCAGCACAACGAACACAAAACATCTCTCA
TCATTTTTCACAAAAAAGGGAACCCAATATTAACGCGCCTGACAAGATAG
CTGTGCGCACAGGACACGGGCTGCGGTGAACCCAGCAGCAGAGGGTAGAC
CCTATTTACCTCATCACTTCAAGCCCTTAGTCGTAGCGATCTGTGCTGAA
CTGGTGTCAAAGTGTTGCAAAACGTGGCCATAATCTCGGACACACACAGA
CAGGTACCGAAAACCTCAAAAATGAAATAAAGGCACCCCTGTCTCCGATT
GTTTTTTTTATTCACACATACACTCACACCTTCACATGACGACAAGTCGG
TATGAATTCGAAGTAGTTCGACAAGGAACTCACACTTTGCTTCGCTCGTG
GCCTGCTTCTCGCTAAAGTAAATGCCAACGAATACCAGCACACGTCATGC
ATTTCGCACAACAGGAAACTCAGCGGAAGCAACAGCAGCAGCACGCTTCT
CACCGCTATGGTGTGCATTATCCTGAGACCATGCCTAATCCCGGAACTCC
TTGCGTGATAAAGGCGTTTCAGCCTCCCCTCTCGTGCCTGCCTTGTACTA
CGGCAGTAGCTATGGCGAAAATGTATCTAAGAGGCGAACCTCAACGTTTG
GCATTTCGCGTGAGAACACCCCTACGATTGGATCTATCTTCGCCCATCCG
CCCCCAAGAAACTTCACTGTAACGATAATTTCGAAACACCCCTTGTGACA
CCTTTGGCAAGTATTTTTTACTTCGTAAACGAAAGAGCGTGTGTTCGTCC
CAATTTTACTGGGTACCAGTCCACACCTTTCGGTATGAAGTAGGTGCATC
AGCCGGGGTCACACAAAAGAAGGGTCACGCACGAGCTTTCTAGTTTTTTG
TTTTGTTTGAATGCCTCAAACCTTTCCTCCTGTGGCTCTTGTCTTTGGTT
TTGAATGCGAGTCGGGTTCAGCAATCCGTTCCCTCTGTTTAATTAGTCAC
GAACAAATCGCTTTACGGTTCTTTTGAATTCACAGTGATGCCAAAACCGC
AAGAAGAATCTCAAAGGAAAAAAACACTTGGGTGGAACGCATAAAGAAAA
ACAAAAAAAGTGCGCAAACTGTGTCTCGTAGGGAAGGCGTTTTATGATTT
GTTTTAAGATCCCCCCGGGGCAAATCAAAGGTGTCATGCTTCAAGGCTGA
AAAGTAATAGGTAGGGGTGACACCATACGGGGAGTACGACAACGGTCTCT
ACGGTATTTACAGATTCAAATCGTTTTGCAGTCTGCCGTCGCACACCAAA
CGCATGAAAAGCTCATGTAAACCCTGCACTTGCTATGTATTCCCCGTGTA
CTTTCTTAACTTCACACAGGCACGAAGGGGGTTCTGTTTGACGAATCGGC
CCTAACCCTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACATCCGGG
GCGTATGGAACCCTATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1377:23111..25277-

>mRNA_P-littoralis_Contig1377.18.1 ID=mRNA_P-littoralis_Contig1377.18.1|Name=mRNA_P-littoralis_Contig1377.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1377:23111..25277- (Pylaiella littoralis U1_48)
ATGGGCTTCCTCAAGTGGTTGGATGAGACGGCCAACTTTACGAACCTCCC
ATCCTGGTTGGACAAGGACATTATGGGGCGCAACGCGTTCGGACCAGACA
TACTGGACAAGGCCAAGGCCGACGGCACGAAGGGGGTTCTGTTTGACGAA
TCGGCCCTAACCCTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACAT
CCGGGGCGTATGGAACCCTATT
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