mRNA_P-littoralis_Contig1377.13.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.540e-82 Identity = 124/210 (59.05%), Postives = 156/210 (74.29%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L IL RGN F D+ MS +S T +FH+F + FARE Y H+ LPT G+ Q++VM YD LGF+GA GSTDVTHI W CP++ + YTGKEG+ T+A+Q VDHT R+LA T GF GS NDK+IIRYD AVTKIR+DPIY+EK +T+++ DGTP+Q KG Y +VDNGY+KW LIPP+K+P + +S+ LESVRKDVECF
Sbjct: 159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT-GDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECF 367
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 255 bits (651), Expect = 5.320e-80 Identity = 120/210 (57.14%), Postives = 154/210 (73.33%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L IL RGN F D+ MS +S T+ ++FH+F K FA E Y +V+LPT GED +VM+ YD +GF GA+GSTDVTHI W CP++ ++YTGKEG T+AFQ VDH+GR+LA T+GF G+ NDKTIIRYD AVT+IR DP+YTE+ Y L+ +DG F+ KG Y +VDNGY+KW LIPP+K P + +S+ LES RKDVEC+
Sbjct: 84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 292
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 255 bits (651), Expect = 6.390e-79 Identity = 120/210 (57.14%), Postives = 154/210 (73.33%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L IL RGN F D+ MS +S T+ ++FH+F K FA E Y +V+LPT GED +VM+ YD +GF GA+GSTDVTHI W CP++ ++YTGKEG T+AFQ VDH+GR+LA T+GF G+ NDKTIIRYD AVT+IR DP+YTE+ Y L+ +DG F+ KG Y +VDNGY+KW LIPP+K P + +S+ LES RKDVEC+
Sbjct: 175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 383
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 235 bits (600), Expect = 1.580e-72 Identity = 113/211 (53.55%), Postives = 148/211 (70.14%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQ-EQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L ILGRGN F + Q+S MS T+Q FHKF K FARE Y H++LP+ + + VMK YD LGF+GA+GS DVTHI W+ CP++ + YTGKEG T+ +Q V+H GR +A T+GF S NDKT + +DA V KIR D YTEK + ++++DGT KG Y +VDNGY+KW IL+ PTK+P ++ + +S+ LESVRKDVECF
Sbjct: 99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECF 309
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 232 bits (591), Expect = 1.310e-70 Identity = 120/239 (50.21%), Postives = 150/239 (62.76%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQ-EQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYT----------------------------EKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L ILGRGN F + QMS MS T+Q FHKF + FARE Y +HLPT + + VMK YD LGFTGA+GS DVTHI W+ CP++ + YTGKEGF TIA+Q VDH GR +A T+GF GS NDKTI+ +D AV KI D YT EK + ++++DGT KG Y +VDNGY+KW ILI P+K+P ++ + +S+ LESVRKDVECF
Sbjct: 86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECF 324
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 225 bits (574), Expect = 7.030e-68 Identity = 112/211 (53.08%), Postives = 145/211 (68.72%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQ-EQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L ILGRGN F + +S MS T+Q FH+F + FA E Y H+ LP+ + ++VM Y+ LGF GA+GSTDVTHI W+ CP++ + YTGKEG T+ +Q V+H GR+LA T+GF GS NDKTII D AV +IR D Y EK +T+ KDGT KG Y IVDNGY+KW +LI P+K+P ++ + +S+ LESVRKDVECF
Sbjct: 128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECF 338
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 220 bits (561), Expect = 6.180e-67 Identity = 109/204 (53.43%), Postives = 141/204 (69.12%), Query Frame = 1
Query: 19 ILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
+LG+GN F+D+ Q+S MS+S Q +FHKF + FA E + H++LPT G ++VM + LG+TGA GSTDVTHI W CP + + +TGKEGF TIA+ VDH GR LA T GF G+ NDKTIIRYD+ V KIR YTE+ Y L +GT R+G + IVDNGY++W LI P+K+P + +T +SR LESVRKDV CF
Sbjct: 43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPT-GTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF 245
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE) HSP 1 Score: 202 bits (514), Expect = 4.360e-63 Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 181 MKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPT 555
M+ YD LGFTGAIGSTDVTHI+WA CP+SW + YTGKEG +IA+QAIVDHTGR+LA TKGFAG+MNDKTII YD AV KIR+DP+YTEKVYTL DK+G PF+RKGNYSIVDNGYNK PPT
Sbjct: 1 MEVYDLLGFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVDNGYNK--ATPPPT 123
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 206 bits (524), Expect = 7.250e-62 Identity = 107/211 (50.71%), Postives = 135/211 (63.98%), Query Frame = 1
Query: 1 VLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQ-EQVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKWAILIPPTKWPTTDMETRWSRALESVRKDVECF 630
VLA L ILG+GN F + QMS MS T+Q FHKF +LFARE Y H+HLP + VMK YD LG CP++ + YTGK+ F TIA+Q VDH R +A T+GF GS NDKTI+ +DAAV KIR D YTEK + L+++DGT KG Y + DNGY+KW ILI P+K+P ++ + +S+ LESVRKDVECF
Sbjct: 21 VLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECF 214
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Match: A0A6H5KVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT5_9PHAE) HSP 1 Score: 197 bits (501), Expect = 5.650e-61 Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 1
Query: 181 MKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKVYTLFDKDGTPFQRKGNYSIVDNGYNKW 534
M+ YD LGFTGAIGSTDVTHI+WA CP+SW + YTGKEGF +IA+QAIV+ TG +LA TKGFAG+MNDKTIIRYD AV KIR+DP+YTEKVYTLFDK+G PF+R+GN SIVDNGYNK+
Sbjct: 1 MEAYDLLGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVNDTGLVLAVTKGFAGAMNDKTIIRYDTAVAKIRRDPVYTEKVYTLFDKNGQPFEREGNNSIVDNGYNKF 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1377.13.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1377.13.2 >prot_P-littoralis_Contig1377.13.2 ID=prot_P-littoralis_Contig1377.13.2|Name=mRNA_P-littoralis_Contig1377.13.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp MTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVMKHYDHback to top mRNA from alignment at P-littoralis_Contig1377:16067..18017+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1377.13.2 ID=mRNA_P-littoralis_Contig1377.13.2|Name=mRNA_P-littoralis_Contig1377.13.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1951bp|location=Sequence derived from alignment at P-littoralis_Contig1377:16067..18017+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1377:16067..18017+ >mRNA_P-littoralis_Contig1377.13.2 ID=mRNA_P-littoralis_Contig1377.13.2|Name=mRNA_P-littoralis_Contig1377.13.2|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig1377:16067..18017+ (Pylaiella littoralis U1_48)back to top |