mRNA_P-littoralis_Contig1377.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1377.4.1
Unique NamemRNA_P-littoralis_Contig1377.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1377.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1377contigP-littoralis_Contig1377:6798..7298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size502
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.0546782-CDS-P-littoralis_Contig1377:6797..71721680789635.0546782-CDS-P-littoralis_Contig1377:6797..7172Pylaiella littoralis U1_48CDSP-littoralis_Contig1377 6798..7172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.064886-UTR-P-littoralis_Contig1377:7172..72981680789635.064886-UTR-P-littoralis_Contig1377:7172..7298Pylaiella littoralis U1_48UTRP-littoralis_Contig1377 7173..7298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1377.4.1prot_P-littoralis_Contig1377.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1377 6798..7172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1377.4.1

>prot_P-littoralis_Contig1377.4.1 ID=prot_P-littoralis_Contig1377.4.1|Name=mRNA_P-littoralis_Contig1377.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
VFRQASFVRGEGVPGDRGWPGRRSTVDLLHLRKEHPHELGFVEQRQHAEF
LRKRLGFFASIAAVSRKQGSFILFYRIVSPLCVLHRFSFRGVCALTRSGR
FTCLARTFLFARPATGTWDQSVKL*
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mRNA from alignment at P-littoralis_Contig1377:6798..7298+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1377.4.1 ID=mRNA_P-littoralis_Contig1377.4.1|Name=mRNA_P-littoralis_Contig1377.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig1377:6798..7298+ (Pylaiella littoralis U1_48)
GTTTTTCGACAGGCCAGCTTTGTTCGCGGAGAAGGAGTTCCGGGTGATCG
TGGATGGCCAGGTCGCCGGAGTACGGTTGACTTGCTCCACCTGCGGAAGG
AACACCCACACGAGTTGGGCTTCGTGGAACAGCGTCAGCATGCTGAATTC
CTGAGAAAGCGCCTTGGTTTTTTTGCGTCCATTGCTGCAGTGAGTAGAAA
GCAGGGCAGTTTTATTTTGTTTTACCGCATTGTATCCCCGTTGTGTGTCC
TGCACCGTTTCTCTTTTCGTGGCGTCTGTGCACTTACTAGATCCGGGCGA
TTCACATGTCTGGCGAGAACCTTCTTGTTTGCTCGGCCCGCCACCGGTAC
TTGGGACCAGAGTGTCAAGCTGTGATCGACGGCACGATCGCCGCGATGAA
ACGGCGAGACGAAGGCGGCGAGGCGGCGGTGCAGGCGAAAACGAAGGGGC
CGGATGGCGTGGACAGTGCGCCAGAGGAAGTCAAGGCAGCGTTGCGCAGA
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig1377:6798..7298+

>mRNA_P-littoralis_Contig1377.4.1 ID=mRNA_P-littoralis_Contig1377.4.1|Name=mRNA_P-littoralis_Contig1377.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1377:6798..7298+ (Pylaiella littoralis U1_48)
GTTTTTCGACAGGCCAGCTTTGTTCGCGGAGAAGGAGTTCCGGGTGATCG
TGGATGGCCAGGTCGCCGGAGTACGGTTGACTTGCTCCACCTGCGGAAGG
AACACCCACACGAGTTGGGCTTCGTGGAACAGCGTCAGCATGCTGAATTC
CTGAGAAAGCGCCTTGGTTTTTTTGCGTCCATTGCTGCAGTGAGTAGAAA
GCAGGGCAGTTTTATTTTGTTTTACCGCATTGTATCCCCGTTGTGTGTCC
TGCACCGTTTCTCTTTTCGTGGCGTCTGTGCACTTACTAGATCCGGGCGA
TTCACATGTCTGGCGAGAACCTTCTTGTTTGCTCGGCCCGCCACCGGTAC
TTGGGACCAGAGTGTCAAGCTGTGA
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