mRNA_P-littoralis_Contig1377.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1377.2.1
Unique NamemRNA_P-littoralis_Contig1377.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1377.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1377contigP-littoralis_Contig1377:2011..3127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size398
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.9830468-UTR-P-littoralis_Contig1377:2010..20271680789634.9830468-UTR-P-littoralis_Contig1377:2010..2027Pylaiella littoralis U1_48UTRP-littoralis_Contig1377 2011..2027 -
1680789635.0271878-UTR-P-littoralis_Contig1377:2971..31271680789635.0271878-UTR-P-littoralis_Contig1377:2971..3127Pylaiella littoralis U1_48UTRP-littoralis_Contig1377 2972..3127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.9943314-CDS-P-littoralis_Contig1377:2027..21301680789634.9943314-CDS-P-littoralis_Contig1377:2027..2130Pylaiella littoralis U1_48CDSP-littoralis_Contig1377 2028..2130 -
1680789635.0146394-CDS-P-littoralis_Contig1377:2849..29711680789635.0146394-CDS-P-littoralis_Contig1377:2849..2971Pylaiella littoralis U1_48CDSP-littoralis_Contig1377 2850..2971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1377.2.1prot_P-littoralis_Contig1377.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1377 2028..2971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1377.2.1

>prot_P-littoralis_Contig1377.2.1 ID=prot_P-littoralis_Contig1377.2.1|Name=mRNA_P-littoralis_Contig1377.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MRIAVPLLRRRRRTRLAVSPEHEMRKAAAAGEEMTDKVRQRSYCHHLQAS
TTVVQPTVGTDCRHARDAGVVSLA*
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mRNA from alignment at P-littoralis_Contig1377:2011..3127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1377.2.1 ID=mRNA_P-littoralis_Contig1377.2.1|Name=mRNA_P-littoralis_Contig1377.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1117bp|location=Sequence derived from alignment at P-littoralis_Contig1377:2011..3127- (Pylaiella littoralis U1_48)
GGGAAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGT
TTGGTGGCTTGCGTTTTGTGGAGAGGGGAACCCTGCCCCAGATACCAGCC
CTCCACGGGACTTCGACGAAAGAGAGACGATAGGATTGCTGGAGAGGATG
CCGTAGATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTACGCG
TCTGGCGGTATCGCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCTGGGG
AGGAAATGACCGATAAAGTTCGCCAAAGGTGTGGTCCTTCGAAATGGTTC
ATTTTTTGTGTATGATAGATAAATCTGTCCTGCGTTGGCAATGGTACGTT
GATGTTACGCTTTCGTGTCGGTAATTTGGTTAATTGTAGAGCTTTCCCTC
TAATAGCAAGTACTTGTAGTTAATGAGAGACAGCGAGAGACATTGCCGTA
TGATAGAGTTAGTTGCGTACGACGCCTGCTGAAACTATTTAAAGTCACAG
ATATCCGCACCGAAGAGAGTATCACCATCAAACGATACGTTTACTCTCGA
CGACACGTTTCCAACGCGCCCTTTACGGCACCGACACATGGAATGAATTG
TGCTTTGTATATCGGTCCAGGGGGGTCCGTCGTATCTTACGGCACCCACG
GAACACACGCGTCACGCCGCCACACACACCGCGCGGTAGAGCTGTATTCT
GCTGTACAGCTGTATTCTACTGTACTGCTGCTGCTTTACTGCTGCTGCTG
TACTGCTGGTGCTGCTGCGCTGCTGTTGCTGCTACTTCGCTGCTGGTGCT
GCTGTACTGCTGGTGCTGGGATGTGTAATGATGTATCATCTCGAAGTATA
ATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCACAGTTACAACAACA
CAAGAACAGAGGTACAGCAAAACAAGAGCGTTGTGTGTGCGGCAGGCTGC
GGCGTGATGTGTAAATTCTGTGATGCGATATTTTAACACGAAAACAGGTC
ATATTGTCATCACCTACAGGCGTCAACAACAGTAGTACAGCCGACCGTGG
GAACGGACTGTAGACATGCTCGTGATGCTGGTGTGGTGTCGCTGGCGTAG
GAGTGGAAGGCTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1377:2011..3127-

>mRNA_P-littoralis_Contig1377.2.1 ID=mRNA_P-littoralis_Contig1377.2.1|Name=mRNA_P-littoralis_Contig1377.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig1377:2011..3127- (Pylaiella littoralis U1_48)
ATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTACGCGTCTGGC
GGTATCGCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAA
TGACCGATAAAGTTCGCCAAAGGTCATATTGTCATCACCTACAGGCGTCA
ACAACAGTAGTACAGCCGACCGTGGGAACGGACTGTAGACATGCTCGTGA
TGCTGGTGTGGTGTCGCTGGCGTAG
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