mRNA_P-littoralis_Contig1375.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1375.3.1
Unique NamemRNA_P-littoralis_Contig1375.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1375.3.1 vs. uniprot
Match: A0A6H5LQW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQW7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.600e-13
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 LPIAYAAVSTKQAKQVNGPERGTRATDSLVKFAIPNFLLLVKEAAHDLDLPLPLDLDEKINYTT 192
             PIAYAA++ KQ++Q++  ER    T +LV+FAIP F++L K AA  L+LPLPLD+++K+  T+
Sbjct:   64 FPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTS 127
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BLAST of mRNA_P-littoralis_Contig1375.3.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.670e-12
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 LPIAYAAVSTKQAKQVNGPERGTRATDSLVKFAIPNFLLLVKEAAHDLDLPLPLDLDEKINYTT 192
             PIAYAA++ KQ++Q++  ER    T +LV+FAIP F++L K AA  L+LPLPLD+++K+  T+
Sbjct:  127 FPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTS 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1375.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LQW7_9PHAE4.600e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAW6_9PHAE7.670e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1375contigP-littoralis_Contig1375:6742..6933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size194
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.9254215-CDS-P-littoralis_Contig1375:6741..69331680789634.9254215-CDS-P-littoralis_Contig1375:6741..6933Pylaiella littoralis U1_48CDSP-littoralis_Contig1375 6742..6933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1375.3.1prot_P-littoralis_Contig1375.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1375 6742..6933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1375.3.1

>prot_P-littoralis_Contig1375.3.1 ID=prot_P-littoralis_Contig1375.3.1|Name=mRNA_P-littoralis_Contig1375.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
LPIAYAAVSTKQAKQVNGPERGTRATDSLVKFAIPNFLLLVKEAAHDLDL
PLPLDLDEKINYTT
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mRNA from alignment at P-littoralis_Contig1375:6742..6933-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1375.3.1 ID=mRNA_P-littoralis_Contig1375.3.1|Name=mRNA_P-littoralis_Contig1375.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig1375:6742..6933- (Pylaiella littoralis U1_48)
CTCCCCATCGCGTACGCTGCCGTCTCCACCAAGCAGGCAAAGCAGGTGAA
CGGGCCAGAGCGGGGGACAAGAGCGACGGACTCCCTCGTCAAGTTCGCGA
TCCCGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTG
CCCCTACCGTTGGACCTCGACGAGAAGATCAACTACACCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1375:6742..6933-

>mRNA_P-littoralis_Contig1375.3.1 ID=mRNA_P-littoralis_Contig1375.3.1|Name=mRNA_P-littoralis_Contig1375.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig1375:6742..6933- (Pylaiella littoralis U1_48)
CTCCCCATCGCGTACGCTGCCGTCTCCACCAAGCAGGCAAAGCAGGTGAA
CGGGCCAGAGCGGGGGACAAGAGCGACGGACTCCCTCGTCAAGTTCGCGA
TCCCGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTG
CCCCTACCGTTGGACCTCGACGAGAAGATCAACTACACCACC
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