mRNA_P-littoralis_Contig1374.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1374.5.1
Unique NamemRNA_P-littoralis_Contig1374.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1374.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1374contigP-littoralis_Contig1374:7280..7827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size284
Hectar predicted targeting categoryother localisation
Exons3
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.7554107-CDS-P-littoralis_Contig1374:7279..74181680789634.7554107-CDS-P-littoralis_Contig1374:7279..7418Pylaiella littoralis U1_48CDSP-littoralis_Contig1374 7280..7418 -
1680789634.7688305-CDS-P-littoralis_Contig1374:7634..77231680789634.7688305-CDS-P-littoralis_Contig1374:7634..7723Pylaiella littoralis U1_48CDSP-littoralis_Contig1374 7635..7723 -
1680789634.777404-CDS-P-littoralis_Contig1374:7773..78271680789634.777404-CDS-P-littoralis_Contig1374:7773..7827Pylaiella littoralis U1_48CDSP-littoralis_Contig1374 7774..7827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1374.5.1prot_P-littoralis_Contig1374.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1374 7280..7827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1374.5.1

>prot_P-littoralis_Contig1374.5.1 ID=prot_P-littoralis_Contig1374.5.1|Name=mRNA_P-littoralis_Contig1374.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
ESPNFVVGGICTTARSQQALVFDARLIREIWVCVYRLSASWKSPNFVLYA
QRRVGRGANTTRRGAVKSTLTIFQNPGTARTMVRIMNKSTSII*
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mRNA from alignment at P-littoralis_Contig1374:7280..7827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1374.5.1 ID=mRNA_P-littoralis_Contig1374.5.1|Name=mRNA_P-littoralis_Contig1374.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=548bp|location=Sequence derived from alignment at P-littoralis_Contig1374:7280..7827- (Pylaiella littoralis U1_48)
GAAAGTCCGAATTTCGTAGTGGGAGGTATTTGTACAACAGCGCGTTCACA
GCAGTAGCGGCAGTCATCACGGAGCATGTTATCTTCGATGTGATCTTATC
GTGTGCGTTGGTGTTTGATGCACGTCTCATTCGGGAAATTTGGGTTTGTG
TGTATCGCTTGTCGGCGTCGTGGAAGAGCCCAAATTTTGTTTTCTGCACG
ATTTTCGATTTAATGGTTGCTGCTGCCGCGCGTGTGCCTACATTCGGAAA
TTGAGGCTTGCGTGTATCGCCTCTCGGAGTCGTGTTAAAGCCCATATTTC
GTAGATACAGTGCTTGGCATGTTTGCTCACACAGACAGCAGTACTAAGCT
GTATCCATATCCATACAGCGGTACAGGTTCTCGTCATCTAAATGTATCAT
TTATATGGCGTATGCACAACGGCGGGTAGGGCGGGGCGCAAACACAACAC
GGCGGGGCGCAGTTAAAAGTACACTCACCATATTCCAGAATCCAGGAACG
GCGCGGACAATGGTGAGAATAATGAATAAATCAACGAGTATTATATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1374:7280..7827-

>mRNA_P-littoralis_Contig1374.5.1 ID=mRNA_P-littoralis_Contig1374.5.1|Name=mRNA_P-littoralis_Contig1374.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1374:7280..7827- (Pylaiella littoralis U1_48)
GAAAGTCCGAATTTCGTAGTGGGAGGTATTTGTACAACAGCGCGTTCACA
GCAGGCGTTGGTGTTTGATGCACGTCTCATTCGGGAAATTTGGGTTTGTG
TGTATCGCTTGTCGGCGTCGTGGAAGAGCCCAAATTTTGTTTTGTATGCA
CAACGGCGGGTAGGGCGGGGCGCAAACACAACACGGCGGGGCGCAGTTAA
AAGTACACTCACCATATTCCAGAATCCAGGAACGGCGCGGACAATGGTGA
GAATAATGAATAAATCAACGAGTATTATATAG
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