mRNA_P-littoralis_Contig1372.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 2.460e-10 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 2
Query: 1469 AVSFSFRFQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLL 1612
AV F QGK+AEAE LY+RCQAI E+ALGPEHPS+ATTLH RAGL+
Sbjct: 646 AVGRLFELQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLM 693
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 7.650e-10 Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query: 1421 ALDHSSTTAFTGLDDTAVSFSFRFQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQLQ 1627
AL+ T +V F F QGKYAEAE LYER QAI+E LGPEHP + T+L+NRA LLE+Q++
Sbjct: 636 ALESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQVR 704
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.050e-9 Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query: 1493 QGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQ 1621
QGKYAEAE LYER QAI E ALGPEHP++AT L+NRAGLLE+Q
Sbjct: 30 QGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQ 72
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 3.460e-9 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2
Query: 1493 QGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLL 1612
+GKYAEAEALY +CQAIEEK LGPEHPSLATTLHN A LL
Sbjct: 1764 KGKYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLL 1803
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 6.760e-9 Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 2
Query: 1493 QGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQ 1621
+GKY +AE LYERCQAI EK LGPEHP +ATTL+NRAGLLE Q
Sbjct: 940 KGKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 6.920e-9 Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 2
Query: 1469 AVSFSFRFQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLE 1615
+V F F QGKYAEAE LYER AI+EK LGPEHP +AT+L NRA LLE
Sbjct: 685 SVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8 Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 2
Query: 1442 TAFTGLDDTAVSFSFRFQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQ----LQFIAGAPSAFLLT 1663
T FT D++ + QGKY+EAE LY+RCQA++ KALGPEHPSLA TL+NRA LL Q Q +A S LT
Sbjct: 170 TIFTLKHDSS-RYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQGGVVEQLLARCQSPLALT 246
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.220e-8 Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2
Query: 1472 VSFSFRFQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQL 1624
V F QGKY EAE LYER QAI+EK LG EHP +A++L+NR LL Q+
Sbjct: 11 VGLLFDIQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 8.000e-8 Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 2
Query: 1493 QGKYAEAEALYERCQAIEEKALGPEHPSLATTLH 1594
QGKYAEAEALY RCQAIEEK LGPEHPSLA+TLH
Sbjct: 339 QGKYAEAEALYVRCQAIEEKVLGPEHPSLASTLH 372
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 4.790e-7 Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 2
Query: 1490 FQGKYAEAEALYERCQAIEEKALGPEHPSLATTLHNRAGLLEEQ 1621
FQGKY EA LY RCQAI+E LGP+HP LATTL N A LL EQ
Sbjct: 20 FQGKYTEAGPLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQ 63 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1372.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1372.3.1 >prot_P-littoralis_Contig1372.3.1 ID=prot_P-littoralis_Contig1372.3.1|Name=mRNA_P-littoralis_Contig1372.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp MICPALDHSSTTAFTGLDDTAVSFSFRFQGKYAEAEALYERCQAIEEKALback to top mRNA from alignment at P-littoralis_Contig1372:5437..10183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1372.3.1 ID=mRNA_P-littoralis_Contig1372.3.1|Name=mRNA_P-littoralis_Contig1372.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4747bp|location=Sequence derived from alignment at P-littoralis_Contig1372:5437..10183+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1372:5437..10183+ >mRNA_P-littoralis_Contig1372.3.1 ID=mRNA_P-littoralis_Contig1372.3.1|Name=mRNA_P-littoralis_Contig1372.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1372:5437..10183+ (Pylaiella littoralis U1_48)back to top |