mRNA_P-littoralis_Contig137.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig137.92.1
Unique NamemRNA_P-littoralis_Contig137.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig137.92.1 vs. uniprot
Match: A0A6H5JSK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 8.920e-36
Identity = 127/314 (40.45%), Postives = 158/314 (50.32%), Query Frame = 1 
Query:  109 MPNPDASLFGVVTRHPLLSWMRPKPKDDVPCGAGGRADTICGLGVDLKHSSSSKDEKISSTS-KSSSPPQLTAEEPGL--STAPVSTCASTMSGASWSD--VAVGSNESS---AGVIAFHRLEHNT-----------DGTSRRPPLTLTVDPDPPVRRVTPVLPAPPVDIPWRVFDPDSAITPMQEALSNSLAQMELRMSGRHSTKIPKIASMKTDNHPYRRSQSAHPVSRAVDEAVGTMARGLLTGGERRERDLRKVASPPMC--KLSPP---PEAAS-------------FDGP-SPYNGGAGGRGRREFEG 936
            MP+P+  L   + + PL  WMRPKP+ +V  G G      CG   D   SSS+ +  +S+ S +    P+L+AEE  L   TAP+STC S +S  SWS+    VGS++SS   +G+ AF RL H +           D  +      LTV P P         PAPP+DIPWR+ DPDSA TPMQEAL++SL QMELRMSGRH+TK       K  +  +RR+QSA PVSRA    V       L GG R E         P    KL+PP   P   S             FD P SP      GRG   FEG
Sbjct:    1 MPSPERPLLETIAKFPLFDWMRPKPRREVAPGDGHH----CGSS-DFGSSSSNNNAAVSTCSPRKLRTPRLSAEESTLLSRTAPISTCTSNISAVSWSEQTTVVGSSDSSTGASGMAAFPRLGHKSSPELKLDIVAGDAPAAVLETRLTVAPAP--------TPAPPMDIPWRLLDPDSATTPMQEALNHSLGQMELRMSGRHTTKNSTACRRKDYSQFHRRTQSALPVSRADAPTVDIRPTIPLGGGGRVEXXXXXXXGAPSSFWKLTPPAPRPSGGSGAVAHAAVKSRPRFDFPNSPRESRPAGRGHFGFEG 301
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSK6_9PHAE8.920e-3640.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:457989..462376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1843
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004600.1
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.3020418-UTR-P-littoralis_Contig137:457988..4587421680789634.3020418-UTR-P-littoralis_Contig137:457988..458742Pylaiella littoralis U1_48UTRP-littoralis_Contig137 457989..458742 -
1680789634.334185-UTR-P-littoralis_Contig137:462268..4623761680789634.334185-UTR-P-littoralis_Contig137:462268..462376Pylaiella littoralis U1_48UTRP-littoralis_Contig137 462269..462376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789634.3126588-CDS-P-littoralis_Contig137:458742..4592221680789634.3126588-CDS-P-littoralis_Contig137:458742..459222Pylaiella littoralis U1_48CDSP-littoralis_Contig137 458743..459222 -
1680789634.3259034-CDS-P-littoralis_Contig137:461767..4622681680789634.3259034-CDS-P-littoralis_Contig137:461767..462268Pylaiella littoralis U1_48CDSP-littoralis_Contig137 461768..462268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.92.1prot_P-littoralis_Contig137.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig137 458743..462268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig137.92.1

>prot_P-littoralis_Contig137.92.1 ID=prot_P-littoralis_Contig137.92.1|Name=mRNA_P-littoralis_Contig137.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp
MPNPDASLFGVVTRHPLLSWMRPKPKDDVPCGAGGRADTICGLGVDLKHS
SSSKDEKISSTSKSSSPPQLTAEEPGLSTAPVSTCASTMSGASWSDVAVG
SNESSAGVIAFHRLEHNTDGTSRRPPLTLTVDPDPPVRRVTPVLPAPPVD
IPWRVFDPDSAITPMQEALSNSLAQMELRMSGRHSTKIPKIASMKTDNHP
YRRSQSAHPVSRAVDEAVGTMARGLLTGGERRERDLRKVASPPMCKLSPP
PEAASFDGPSPYNGGAGGRGRREFEGYFPADSTADACPAASASSHTDESP
VPGPGDDGVESDAADSEYMIFEFDDL*
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mRNA from alignment at P-littoralis_Contig137:457989..462376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig137.92.1 ID=mRNA_P-littoralis_Contig137.92.1|Name=mRNA_P-littoralis_Contig137.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4388bp|location=Sequence derived from alignment at P-littoralis_Contig137:457989..462376- (Pylaiella littoralis U1_48)
ACATTTTGGCTTTTCCCTTTTCCCACTACTTGCAAGAGTGCAACCCACTC
AAACAATACACTCCTCCCCAGCAGCGTTTAGTTTCCTCCCGTCAGGTCTC
TACTCGGCATGCCGAACCCCGATGCCTCTCTCTTCGGTGTGGTGACAAGA
CACCCCCTGCTGAGTTGGATGAGACCGAAGCCGAAAGACGATGTGCCGTG
CGGCGCTGGTGGTCGTGCAGACACCATCTGTGGGCTGGGTGTGGACCTCA
AACACAGCAGCAGCTCCAAAGATGAGAAAATTAGTTCCACTTCCAAGTCC
AGCTCTCCACCCCAACTCACCGCAGAGGAGCCTGGGCTTAGTACGGCCCC
CGTCAGCACCTGTGCATCCACCATGTCGGGTGCTTCTTGGTCGGATGTGG
CAGTGGGGAGTAACGAATCGTCCGCGGGAGTAATCGCCTTCCATCGGCTC
GAACACAATACGGACGGAACATCACGACGACCGCCTCTGACTCTCACGGT
TGACCCCGATCCCCCCGTGAGGAGGGTCACACCGGTTCTTCCAGCACCTC
CTGTAGACATCCCGTGGAGGGTGTTCGACCCGGACTCAGCCATAACGCCA
ATGCAGGAGGTAAGAGACGGAAGTGCTTCTGCTGTGCATAGGGCCAGCGC
GTGTGGGGGTTTGTTTGTTTGTGTACAACCTCTTTTTCTTCTTCAAAAGA
ATTGTTTGATCCACAAGAAAAGCACATCACCGGATGAAACGGAGGAACCA
ATTTTCACAAGGAACATGTGCGATTTTATCATGAGTATAAACAAGTATTG
ATGTTTGATGTTTGCGTCCCCTCCCCCCGCCCGGCGTGTTGACAGACGAG
CTCACAATCGGGTATCCCTTACGTTGGCTTTGCCGTCGAGTTCAACACCG
TCGTATCTTCTGCCATTACCATGACGAATGTCCCGGCGCTTTGTTGTCAC
GCATTGATGCCCTCCAACCTCCAACGGTTCTTGGGCATGTTTTGTCTGCA
TTTCGATACGCTCCACGATGTTCCGATGCCGCAACTTTGGTGCGTCAAAG
GTAGGCAATTGCTCGGGCGGCACGACTTCGTTCGTTCTGTATGCACTGGA
TTACATGTCATACGTACATCCCCCTCACGCAAACGCGATGTACGCGTACT
GGATACGGACTTGCCACCGCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGC
TTGCAAAGAGTAGTGTTCAAGACAGTAGGCTCGTGAAAGTTTGCTCATGA
CGGGACGGGCTCCTTTTCTCATCATGGTGTAGACACCTGAAAAGAGGCAC
TGAACAAGCTGGCAGGAGATACGAGCTGCATGAAAATCAGTTGCACATTT
GGCCTCTACATTGGCCCAGCCCCCCCACACGCCGCTATTCCACTGGCTGG
ATTGCCACTCCCCTGCTCCAAAGGGGCTGTGCAGCAGTTTTCCTCAGTTT
GTCCGTGCGGCGGTTGAGCCGTCGCTTGATGCTCCTTTTTCTTAATCCTA
CATATAGGAGCATTATATTATGGTCTTGAAACAGAGCAGACCGCACCTCT
CCCAAACTCTCTGACTCCCCACAATTTGGGAAGAAGAATCAAAGAAAGAA
ACGCGCACCTGACTGACACACGACACAAACACACCGACGGGGTCGTTGCC
CGCCACTCGTGTACAAGTGGCTATTGTAGGAGTCTTGGTCTTCAGCCGGG
TTCTCCGTAGAGTTGATGAACCGCACGGTATCCATCTCATGGATGGTTTT
ATCTCGGTGTGAACGGGTAGTGTCGCACGAACGCAAAAAGGCTGCGGTTG
ACCCAACTTTTGATGTTCCCGGCCTTCTGTTTGAATCGCTTCTTTCGGCC
ACTGCTGTCTCTCACGACACAGCAGTCAACGTTTGGTAATACGTTCATCT
TGTTGTCCGTTCACTATCCATCGATCGTGTCCCGGTCATGTCATACGTCG
TTTTTGTGTTTTTTGTGCGGATGCAGAGCTGCTCTTGTCGTTGTACACAC
ATCAGCGTGTCGTTGTGTCGTTGTGTCGTCCCCGAATATTCGAGGACTCG
GACAGACAAGTGAAGTATTTCAAGCAAATACTTGTACTCGAAGACAAGGA
GATCCCCCCCCCCCCCCCACCCAAAGACGAGAGGAGAGGTACTGCTGCCT
GGTGCTGTATGATTCTTCCACTTTGTGACCGGCGTCGCGTGCATCAAAGT
GATATCGTCGAGCTCGGACGCGGCCCGGACATTCTCAATCCCCAAATGTA
CATTCAACCACATATACTCTCTACTCGTATAATACTCCGGAGTACGTTTT
ATACAGACGTTCTCATAAATAACTCTTTTTCTGCGGAAGGGTCGAAAAGT
ATTCCTGTTCATTGATTTTTTCAATTAGCAGTTTTTGACATCGACGGGAC
AAAAATGTCACCTTTTGACATGCGTCTCGGCAACTAGCAGCAAGCGTCCT
GATTTTTTTAGAGGTGCCGTACAAGTATCTCCTGCTTCGCGCCACACGGG
GATGGATAATGCTGCTCTCGATGAGGCTCTTTTTTTATGGAGCCGGACTC
GACAATGTGTGTGTTCGTCCCATTTATTCTGGGCACGGGTCTACACCTTT
CTGTATGAAGTGGGTGCACCAGCCGGGGTCACGCAGGTCACACGAGCTTT
TGATTTTGATTTTGTTAATTTGCCCACACCTTTCCTCCTGCGGTACGTGC
CTTTGGTTTTTAGTGCGAGTCGGGTTCAGCAATCCCTTTCCTGTTTACTC
ACGAGTTAATCGCTTCCCACCTTACTCGCGAGAAAAAATGAAGGCAAGTA
CCGCAGTGGGGAAGTGGAGAAATAAAAAGAAAATACAAGTATACAAAGAA
AAAACTCCTGTTGACTTCCTACTGTGTGACCCCGGCTGGAGCGTCTACCC
GAAAGGTGTAGAGTGGCGCCCAATTAAAGGGATGACAACACACACACACA
CACGGCAAAGTCGCAAGAGAACGCTCTTGGAGAGAATCGAACCTGCAACC
TTACTGCTACTGCTGTAGAGGTAAACGAGGGAACTACTGTACCGAACAAC
AGGGCGACCGATGTTACCACAAATTAGTAATGCTTCCTTTCCCTACTTCT
CCGTTTTGCACTGCTGTCCTGCTGTTGTGGGTATGTTCCGTGTGCGTCCA
ACAGGCGCTGTCCAATTCTCTGGCGCAGATGGAGCTCCGGATGTCTGGCA
GGCACTCGACAAAGATCCCGAAAATCGCCTCCATGAAGACCGACAACCAC
CCTTACCGTCGATCTCAATCCGCCCATCCGGTAAGTAGGGCCGTTGATGA
GGCTGTTGGTACTATGGCACGTGGTCTCTTGACAGGAGGAGAGAGACGCG
AGCGGGACCTCAGGAAAGTTGCGTCGCCGCCAATGTGTAAGCTCAGCCCG
CCCCCGGAGGCAGCTTCGTTCGACGGGCCTAGCCCCTACAACGGTGGCGC
CGGCGGCAGGGGTAGGAGAGAGTTCGAGGGATACTTTCCTGCCGATTCGA
CCGCAGATGCTTGTCCCGCTGCTTCAGCGTCGTCACACACCGATGAGTCT
CCAGTTCCAGGTCCGGGCGATGATGGTGTTGAAAGTGACGCTGCGGATAG
TGAGTACATGATTTTCGAGTTCGACGACCTCTGACGGAGAGCAGGCACGG
CGAAGGGAGCGAGTGTCTGCTGCGGCTGTGCTTTTAGTTGTGATTTCCGA
AGGAGCGAGTCTAGGTTTCCCGAACAACTGCTGTGCTGCGGGTGATTGTA
TGAGAAGAGCGTTTATTTGTGCTCTTGTACGGTGAGGTCGTGAGGGTTAA
AAACAAGAAGGGCGAAAAAATGCGCAAAAAAAACCCGCGATTGATCAAAA
ACGGGGTGTGATTTATAGAAGGAGTACCTGTATTGTTTATATGACACCAT
AGCCCCAGATAATTTTTTGTTTTAAGTTCGTTCGTTTGGTTGGTGGTGAG
CTTCCATGTTTGCATCATAAGTGATGCATACGGGAAGCTTGTTCCACCCC
CGCTGTACGGCCGCGAGGGGAGGGGTTACGGTGGAAACCTTCATACGGTG
CAGTTCACTGAGTGCTGTTAGTCTTGGCGTGACTAATGTTAGATCACCCA
GTCGTTTCGGCATGGGTGTTTGTGTGTGTTTGACTTTTGCTCTTAGGCAA
CCCGCCAGACGAAAGGCACGACACACATACACTGCCAACAAGTGGACTGT
ATAGATTTTTCTAGTTTTAAGCAAGCGGTTCTTCCAACAGTTATTTTCTA
GTTTTAAGCAATCAGTTGTTCTAGATGGGAGTAAAGGTTTCTAGTAAGTT
TCCTTGGACAACGGCGTGCGCTGCACCTTGTCGTTGACGATCTTTGTTTC
GCTTTCGATTTTTTTTGCAGGTGAAGAGCGGGGGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig137:457989..462376-

>mRNA_P-littoralis_Contig137.92.1 ID=mRNA_P-littoralis_Contig137.92.1|Name=mRNA_P-littoralis_Contig137.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig137:457989..462376- (Pylaiella littoralis U1_48)
ATGCCGAACCCCGATGCCTCTCTCTTCGGTGTGGTGACAAGACACCCCCT
GCTGAGTTGGATGAGACCGAAGCCGAAAGACGATGTGCCGTGCGGCGCTG
GTGGTCGTGCAGACACCATCTGTGGGCTGGGTGTGGACCTCAAACACAGC
AGCAGCTCCAAAGATGAGAAAATTAGTTCCACTTCCAAGTCCAGCTCTCC
ACCCCAACTCACCGCAGAGGAGCCTGGGCTTAGTACGGCCCCCGTCAGCA
CCTGTGCATCCACCATGTCGGGTGCTTCTTGGTCGGATGTGGCAGTGGGG
AGTAACGAATCGTCCGCGGGAGTAATCGCCTTCCATCGGCTCGAACACAA
TACGGACGGAACATCACGACGACCGCCTCTGACTCTCACGGTTGACCCCG
ATCCCCCCGTGAGGAGGGTCACACCGGTTCTTCCAGCACCTCCTGTAGAC
ATCCCGTGGAGGGTGTTCGACCCGGACTCAGCCATAACGCCAATGCAGGA
GGCGCTGTCCAATTCTCTGGCGCAGATGGAGCTCCGGATGTCTGGCAGGC
ACTCGACAAAGATCCCGAAAATCGCCTCCATGAAGACCGACAACCACCCT
TACCGTCGATCTCAATCCGCCCATCCGGTAAGTAGGGCCGTTGATGAGGC
TGTTGGTACTATGGCACGTGGTCTCTTGACAGGAGGAGAGAGACGCGAGC
GGGACCTCAGGAAAGTTGCGTCGCCGCCAATGTGTAAGCTCAGCCCGCCC
CCGGAGGCAGCTTCGTTCGACGGGCCTAGCCCCTACAACGGTGGCGCCGG
CGGCAGGGGTAGGAGAGAGTTCGAGGGATACTTTCCTGCCGATTCGACCG
CAGATGCTTGTCCCGCTGCTTCAGCGTCGTCACACACCGATGAGTCTCCA
GTTCCAGGTCCGGGCGATGATGGTGTTGAAAGTGACGCTGCGGATAGTGA
GTACATGATTTTCGAGTTCGACGACCTCTGA
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