prot_P-littoralis_Contig137.85.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig137.85.2
Unique Nameprot_P-littoralis_Contig137.85.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length555
Homology
BLAST of mRNA_P-littoralis_Contig137.85.2 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 2.010e-92
Identity = 266/602 (44.19%), Postives = 304/602 (50.50%), Query Frame = 0
Query:    7 SSLERVGVAATTKEIGIGGLQDELDPEGFDGLLHPNVLETLADF-DFSYADLSDGNDTEAPQXXXXXXXXPQH-KLSGRKRSFTQACNWDNLGPKAISEMSASLLAGSGWDIGSMISKITNENDSDHSPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGPPTVAPVKQHQQQPVAGSKSGKAPAGADCS-------------KGRRGAXXXXXXXXXXXXXXXAGSGKRLLNPDRMERKASREKRRREEVNEQFDQLLRVLEDAEATSGLEPPPAKEGKTAAHACINGRRVEVLSRTIKVLKKLLQERRDSLGG-----EATAAAAAAG-----SPCAQEGPGPDGPQRA-VEXXXXXXXXXXXXXXXXALAVSDVYGSVPENARVASDAAVHEAPLLAAXXXXXXXXXMGPGAGVKINPSGVVQHMAVPLSGHHASMVMPPGFAGLSGHAM-SAASRVPGHHGQPIFIAVPMYMPQGRGMPLHGVENAVQPPPSVAPPLPAPVPKAIAAAQGAVEK--------------------------VEPATTAPSGKGAWAMPAGMSYPSM-ALPTPQFVTQALSTEEPDEKPTHAVCA 554
            SS  R+ VA      GIG   ++L  E FDGLL P+V +TL D  DFS ADLS  N TE  Q        P   K SGRKRS  Q  NWDNLGPKA+SE+SASLLAG GWD G     + +      SP                                    P T +P  +                                  KGRRGA               A  GKR LNPDRMERKASREKRRREEVNE+FDQLL+VLE+AEATSGLEPP AK+GKTAAHACINGRRVEVLSRTI+V+KKLL+ERR++L G     + T AA AAG          EGP  DG  R+ VE  XXXXXXXXXXXXXX          +  N   A  A       +AA   XXX        G       V+ H+A+ +SGHH SM+M PGF G+ GH + S    +PGH G PIF AVPMY+PQG+GMP      A     + A    A VP A A A  ++                               A  APSGK  WA+PAGM Y SM  L  PQFVTQALS EE  EKPTHAVCA
Sbjct:    3 SSSPRINVAVAAPAAGIGMPHEDLGSEEFDGLLQPSVWDTLVDLGDFSCADLSGSNGTETQQQYKQQQPLPSPPKTSGRKRSLPQTSNWDNLGPKALSEISASLLAG-GWDGG-----VNSSYSVSTSPHFLGPPAGAGGGGPSADSVAV---------------PHTTSPCSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAVAGGVKVGSGAG---AAGGKRPLNPDRMERKASREKRRREEVNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEETAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXXXE-------GXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGMPPVAASTAT----TAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569          
BLAST of mRNA_P-littoralis_Contig137.85.2 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 6.320e-23
Identity = 73/172 (42.44%), Postives = 88/172 (51.16%), Query Frame = 0
Query:  410 VQHMAVPLSGHHASMVMPPGFAGLSGHAMSAASR-VPGHHGQPIFIAVPMYMPQGRGMPLHGVENAVQPPPSVAPPLPAPVPKAIAA-------------------------AQGAVEKVEPATTAPSGKGAWAMPAGMSYPSM-ALPTPQFVTQALSTEEPDEKPTHAVCA 554
            + H+A+ +SGHH SM+M PGF G+ GH++ +    +PGH G PIF AVPMY+PQG+GMP                                                     A G V+  E A  APSGK  WA+PAGM Y SM  L  PQFVTQALS EE +EKPTHAVCA
Sbjct:    1 MHHVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQHGIPGHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATE-AVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.85.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE2.010e-9244.19BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI6.320e-2342.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 237..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..86
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 237..307
e-value: 0.0037
score: 26.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 231..301
score: 9.292562
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 223..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:430437..445670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.85.2mRNA_P-littoralis_Contig137.85.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig137 428224..445868 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig137.85.2 ID=prot_P-littoralis_Contig137.85.2|Name=mRNA_P-littoralis_Contig137.85.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=555bp
MSSAPGSSLERVGVAATTKEIGIGGLQDELDPEGFDGLLHPNVLETLADF
DFSYADLSDGNDTEAPQQQQQQQQQPQHKLSGRKRSFTQACNWDNLGPKA
ISEMSASLLAGSGWDIGSMISKITNENDSDHSPQQPAPTPLACSRAAAAP
APLWSGNGSSSSSHSNPDGPPTVAPVKQHQQQPVAGSKSGKAPAGADCSK
GRRGAGAGAGAGAGAAAGAVAGSGKRLLNPDRMERKASREKRRREEVNEQ
FDQLLRVLEDAEATSGLEPPPAKEGKTAAHACINGRRVEVLSRTIKVLKK
LLQERRDSLGGEATAAAAAAGSPCAQEGPGPDGPQRAVEEETSPPVVAGA
AAAAAALAVSDVYGSVPENARVASDAAVHEAPLLAAAAAAAAAAAMGPGA
GVKINPSGVVQHMAVPLSGHHASMVMPPGFAGLSGHAMSAASRVPGHHGQ
PIFIAVPMYMPQGRGMPLHGVENAVQPPPSVAPPLPAPVPKAIAAAQGAV
EKVEPATTAPSGKGAWAMPAGMSYPSMALPTPQFVTQALSTEEPDEKPTH
AVCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf