mRNA_P-littoralis_Contig1005.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1005.2.1
Unique NamemRNA_P-littoralis_Contig1005.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 681 bits (1758), Expect = 2.640e-230
Identity = 341/558 (61.11%), Postives = 427/558 (76.52%), Query Frame = 1
Query:   10 GKEPLRTIRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVSMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHV---TREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            GK PLRT+R+Q+R LR ++P DSI+LMGDFNR+R  V++W       I+V EL  KDA+LGTR+HGSKR IDH+++ +AHP+D LR PRV+RKVDISDHYP+VSTFRSDRADA+T       D +GV +   T + G+  RI    +PMPG++WY++ G RG+ NHQ+++H+ YW PL DL+EEG  +L   D  A+ DAAA+RMV+ + QVA+    TK    +R PALK  IARAIDDRG++YR A++ R +      AW  Y E +  AERLVR+DRR+ WTKAL TAS Q+R+DPKA W F S VAGWKRKD+  GLQPV+HPD+  L+T A DISA+W+THY+RLA+DVTGNSR  D+W  W AAPQR H+  LD PI   E+ EAL R+KRHK+ G DG+PADFL+LA G+ G++SPM K +LG+LNL+WK ++IP + ++STVV IPKKGD+ DMNN+RGISLM+TVLKVLVMIISTRLN  FE H LFS +QAGFR +EECVTQAACLLEI QRRK +RK+ +LMFVDLKKAYDTVP EALFAKL FYGV
Sbjct:  126 GKVPLRTVRNQMRDLRVKYPNDSIILMGDFNRLRPRVEQWFNCAYESIRVWELTGKDADLGTRDHGSKRVIDHIMTSLAHPQDTLRAPRVLRKVDISDHYPVVSTFRSDRADAST------GDSVGVPINARTIQRGE--RINTGLIPMPGTHWYQESGPRGRANHQKVIHANYWEPLADLIEEGNEELSPEDTTALVDAAASRMVEASHQVARECGQTKDSSTQRAPALKPQIARAIDDRGRLYRAAKRLRKNSPRAKVAWERYHEARMKAERLVRKDRRRAWTKALCTASEQLRSDPKAAWHFMSAVAGWKRKDSSGGLQPVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGV 675          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 227 bits (578), Expect = 1.930e-59
Identity = 194/621 (31.24%), Postives = 283/621 (45.57%), Query Frame = 1
Query:    1 GRAGKEPLRTIRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVS----MMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQR-----NHQRMVHSTYWTPLLDLLEEGE-GDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAA-----------------YEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKF----------------SSDVAGWKRKDTGS---GLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVK-WTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAG-------DVGTES------PMAKALLGILNLMWKYQIIPEEWQDSTVVSIPK-KGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEH-NLFSHA-QAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            G+   E L  + SQL+ L  QFP   +V++GD+N    E+ + L R   P+    +    A   T     +  IDH V     M  H   H  R RV R  D+SDH+PL+             A  P         +  +G    IE          W R G +R  R     + Q +VH  +W PL  L+++ E  DLD        D AA R+V T  +VA+   +  L++   +P    S   A    G+    + +TR   A + A +                   Y  T+  A+  VR++ R +W K +Q     +R D K  W++                 S  AG+    +       QP+KHP +  ++T   +I+ +W  ++  LA D TG+      W +  ++ P  P L  L+ P+   E+  ALL +K  KA G DG+ ADFLKL  G       D G ++      PMA  L  +L  MW  + +P  W  + VV I K +GD  +M NYRGISL+  VLK+L  II+ RL    ++  N   H  QAGFR +EEC+     L E+ +RR++ +  ++L F+DLKKAYDTVPH ALF KL+  GV
Sbjct:  272 GKRRTEVLHLLLSQLKALLRQFPSTPLVVLGDWNMREQELAKLLARWHLPLARASVCGNPATTHTPRLRPRSAIDHAVYRTDIMRTH---HQLRCRVDRSWDLSDHWPLLVRCLYHNLHQQEHAPSP---SXXXXXSYSKGTCSDIEQG--------WVRVGRMRPLRLLSEDSKQELVHHNFWNPLRALMDQEEDSDLD-------VDDAAKRLVSTIQRVAQECHI--LKDAGERPPAGKSHTSAASSTGRAAHLSHRTRSLIARKRALFLKLQRIPHGSERWERTMREYLSTRHAAKTAVRKENRVSWLKYVQRGCMAVRGDCKRHWQWIRSLIRSSSSSSCTLPDSHQAGFSSCSSSVIDISRQPIKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGV 869          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 212 bits (539), Expect = 1.270e-54
Identity = 179/568 (31.51%), Postives = 263/568 (46.30%), Query Frame = 1
Query:   16 EPLRT-IRSQLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAEL---GTREHGSKRTIDHMVSMMAHPEDHLRRPRVI---RKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRR-ARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDP--KAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDV-TGNSRSPDQWVKWT----AAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            EP R  +R +L +LRE+FP+D+IV+ GD+N    ++D  LRR         +  +DA     GT   GS R IDH V+        L  P  +      D SDH+P+              A  P   G             R+   ++P P             R+           P  D   EG    +     A AD     +  TA +V     V++ R     P L+ SI  AI  R   +    ++ RG    ++ A   Y   +   + +VR +RR+   +A+  A    R     + FWK++  +A      +    QPV  P +GVL T   +I+A W  HY  L  D      R+      W       P  P L  ++ PI   EL +AL RL  +KASG DG+ A+ LKLA      +SP  K+LL ++N +W  + +P++W  S VVSI KKGDV  M+NYRGIS+M  ++K+L+ +++ RL +  + + L    Q GF   EEC  Q A + +IA RR+     T+  F+DL+KAYDT+PHE LF+KL+  G+
Sbjct:   23 EPYRCRLREELAQLREKFPRDTIVVGGDWNLDEAQLDALLRRWRCVPDAKTIWPRDASARVRGTCRRGSCRVIDHFVAWPPVMGPSLSFPHSVFVDYSWDTSDHFPVF-------------ASVPRLVGDSFEHPHPPLMLERLSVRSIPKPARGDPPSEWPTPFRDFVTANPFAILAPPNDEPMEGAMSREPDSIDADADGFVQAVWSTARRVGA---VSRTRRKSLGPPLQRSILGAIARRRHAFLALCQEARGPI--QSVALDRYIAARLRVKNMVRTNRRRQKARAIDKAINDFRQGGGRRGFWKWARSIAKGHPTQSNRAEQPVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAI--YAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGI 570          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 200 bits (509), Expect = 4.330e-51
Identity = 108/297 (36.36%), Postives = 167/297 (56.23%), Query Frame = 1
Query:  784 WAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYG 1671
            W ++EE    A++  ++DR++   K L     + ++   K  W +   +A  +R       +PV   D   L+ G  +I  +W++H+E+L+ D  G S+  + W K    P    L   D+PIT  E+  AL    + KA+G DG+P +F K+   D   ESP    +  ++  ++    +PE+W ++ +V +PKKGD+ +M+NYRGISL++T+ K +V II+ +LN     + +    QAGFRK EEC+ Q  C  EI +RR L+ K T  +F+D KKAYD VPHE LFAKL  YG
Sbjct:   93 WLSHEELTDQADKQKKRDRKENKRKYLMRGIKSFLQNRSKIHWNWLKTIARKRRPFV---AKPVIDRDKNELVFGTKEIGEAWRSHFEKLSKDDDGFSKDREYW-KTVIEPAAQTLKGCDDPITWEEVLRALEHSSKGKATGTDGIPIEFYKVLQRDKNRESPFGNFVFQLITEIYAQAKVPEQWNEAMIVPVPKKGDLHNMDNYRGISLINTLCKEVVKIITEKLNRICTTNKILRDEQAGFRKLEECIAQTTCFYEIVKRRSLKGKPTMALFLDFKKAYDKVPHEGLFAKLRGYG 385          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A1R0GS88_9FUNG (LINE-1 reverse transcriptase-like protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GS88_9FUNG)

HSP 1 Score: 191 bits (484), Expect = 2.130e-49
Identity = 110/296 (37.16%), Postives = 165/296 (55.74%), Query Frame = 1
Query:  790 AYEETKKTAERLVRQDRRKTWTKALQTASAQMRT-DPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            AY + K  AE+  + D +K + K L   +  + T +PK  W+F     G  + +T +G  PV      +++   + +   W+ H++ LA+D TGNSR+ D+W               DEPI   E+  AL  +  +KASG DG+P +  KL   ++   S MAK +  IL  +W    IPE    S VV +PKKG+++D NNYRGISL+ T +K+L  +++ +L+   E++ + +  Q GFR +EECV+QA  L EI +RRKL    T++ F+D  KAYD VPH AL  KL   G+
Sbjct:  201 AYVKAKNDAEKSKKLDSKKFYEKKLLKLNEYITTNEPKKMWEFIKYSTGKFKSNTSAG--PVLDIHKNLIVDSESRLKV-WENHFKNLATDTTGNSRTADKWEPMLDYDIE-SFPECDEPIKWSEITTALKEIPNNKASGTDGIPNEVWKLIKSEISPTSKMAKIVFKILKSIWDTGNIPEIMSTSIVVPVPKKGNLSDPNNYRGISLIPTFIKILAKVLANKLSAISEKYKIIAKEQGGFRTREECVSQATILYEIVKRRKLMGLETWIGFIDFSKAYDLVPHMALIYKLRNMGI 492          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 195 bits (496), Expect = 8.100e-49
Identity = 161/549 (29.33%), Postives = 254/549 (46.27%), Query Frame = 1
Query:   43 LRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSK--RTIDHMVSMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKR--KPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTD-PKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            LR++R++  +  I+L+GDFN+        L R    ++   +R      G+R +G+   R IDH ++    P +     +VI+ VD+SDH P+V+ +                                +E   +P P     RK  +   +       S     +LD LE    DL E   + +  AA                ++ ++E K+  K  L      AI  R K+++      G   N + +   Y   K+ A    R DRR      ++ A   M T+ P+  W +    +G   +   S +          L+TG  + S +W  H+E LA D TGNSRS ++W       +  +    D  +T  E+  AL     +K+ G DG+P++  KL   +    SP AK    ++N +W+ + IP++   S +V IPKKGD+ D NNYRGISL+ T+ KVL  II+ RL++   +H++    QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+
Sbjct:  771 LRKMRQKKKKSKIMLIGDFNKDTESTISMLNRIGIGLRRATVRNSK---GSRMNGAVMGRMIDH-ITYSGFPNNPTYA-KVIKSVDLSDHLPVVAEWD-------------------------------MEALKIPAP----QRKIDVERIKEVGVSFVSINRFAILDQLENDIEDLAENTAEEIWRAA--------------DELSCIKEEKQRFKTVLSKETLNAIQRRRKLFK------GISKNPSLS-EEYSNLKEKANEHCRADRRSNKVAEVKKARELMLTNKPRELWSWLKRYSG---RFLSSLIDGPIFDKNRKLVTGHEEKSEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAVY-TECDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGI 1254          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 193 bits (491), Expect = 2.200e-48
Identity = 143/418 (34.21%), Postives = 211/418 (50.48%), Query Frame = 1
Query:  466 RKGGIRGQRNHQRMVHSTYWTPLLDLLEEG--EGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREP----------------KRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRP--HLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKL 1659
            R G  +  RN+    H   W   + +  EG  E +L  + R AV  +AA R+V      ++A    +LRE                  ++ AL +   R + ++ ++ RR  K + +     A W    +  + A R   + R + W  A+  A    R D +A W+ +   AG+K K T   L+P++    G L      I   W+ HY  +  D TG+SR    W       + P   ++ LDE I+  E+ EAL  +K  KA+G DG+  + LK+AA D     PM K+++ +L   W   +I EEW+ + VV+IPKKG      NYRGISL+   LK+L  I ++RLN+  EE+ LF   QAGFR+ EEC+   A L+E AQRR  ++KAT   F+D +KAYD VPHEA+  KL
Sbjct:  157 RSGSAKVNRNYSESDH---WPMRVRVHLEGPVERELPRMSRLAVR-SAAMRIVSDPTWDSEAESAKELREKCFETAMKNQCGSSPGGGKRLALTSKTKRLLREKKEVSRRLFKEKEESDELRAQWRKLTKDVRMACRKDLRIRWENWRAAI--AEDFRRGDSRAIWRVAK--AGYKAK-TEQSLKPIRDAG-GTLQVVPEKIVEVWEAHYREMFRDKTGHSRDRSYWENKPIRERGPGERVSKLDEAISEEEVAEALSGMKNWKAAGPDGVIPEILKIAAEDC----PMRKSIVKVLQKAWDEGVIDEEWELAEVVTIPKKGKAELTENYRGISLLPVCLKLLCTIAASRLNDYMEENGLFDERQAGFRRGEECLGHVAYLVETAQRRSREKKATHACFIDFRKAYDRVPHEAMLRKL 560          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A498SLY1_ACAVI (Reverse transcriptase domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLY1_ACAVI)

HSP 1 Score: 190 bits (483), Expect = 2.280e-48
Identity = 156/562 (27.76%), Postives = 262/562 (46.62%), Query Frame = 1
Query:   40 QLRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPI----KVMELREKDAELGT--REHGSKRTIDHMVSMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMV-HSTYWTPLLDLLEEGEGDLDELDRQAVAD--AAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTASAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDE----PITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTE----SPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            QL +  ++FP   +++MGD+N  + E+  WL  T  P+      +++   D    T  R +     ID ++         L   RV R  D+SDHYP+ + F        T                                 S  Y     +   N + +V H+ +     D+L     DL+  D  A A+   +A ++V +       H +++ ++P R   L     +AI  +  +++  +  +G      A   AY++ +K    L++ +++  W   +   +   + +P+ F+++  ++ G K       L P+K  + GVL      I+  W+ HY  L  D TG+S++ + W K+       H+ S  E    P +  E+  A+  L  +KA+G DG+PA+F KL   D+ T     + + K L  I   +W    IP  W  + ++SIPKKGD+   +NYRGISL+  + K+L  ++S+R++   E + +    QAGFRK+EEC+ Q   L+E  QRRK + + T+L F+D KKAYD V HEALF K+   G+
Sbjct:   34 QLEQSSDRFPDAPLIMMGDWNMTKKELKAWLS-TVLPLGSLCNGLDVLNCDGCDSTFHRSNCKNSAIDFIICNSI-ARSFLSSCRVDRGCDLSDHYPISALFCPSNTIVNT-----------------------------EKKNSLMYNMNRNKVVANKESIVCHNRF-----DIL----SDLESEDVNATAENFESAVKLVSSDL-----HLMSRNKKPARL-CLSKKTRKAIKIKNSLFKMCQ-CKGSSM---ADLDAYKKARKGVTNLIKTEKKNKWFNHIANGAEFRKHEPRMFFRWLKNLVGVKSYPK---LGPLKDKN-GVLQVTPEKIAEVWREHYRNLFEDSTGHSKNKEYWSKFPI-----HIRSTVELSNIPFSWSEIVLAVRSLSTNKAAGPDGIPAEFFKLINNDMDTGLAPCTKLGKFLFSIFEKVWVSGKIPNSWNLAKIISIPKKGDLTITDNYRGISLIPVISKILSKMLSSRISYHLESNGIICKEQAGFRKREECLGQVIALVEAIQRRKHKGEPTYLAFIDFKKAYDMVAHEALFLKMTGVGI 536          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 193 bits (491), Expect = 3.000e-48
Identity = 161/552 (29.17%), Postives = 258/552 (46.74%), Query Frame = 1
Query:   43 LRRLREQFPQDSIVLMGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSK--RTIDHMV--SMMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIGVHVTREEGQPI--RIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLLDLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPALKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQDRRKTWTKALQTA-SAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKW-TAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            LR+LR +  +D I+L GDFN+        L R    ++   +       G+R +G+   R IDH+    ++ +P       +V++ VD+SDH P+++ +  +  D+ T     V   I V   +E G+        AAL  P                                   E ++++L          +R+    ++ A+     K+ +      L     +A + R K ++R     GD    T     Y + K+ +  L R DRR      ++ A    +    +  W +    +G  R     G  PV + D   L+T     +  W TH+E+LA D TGNSRS D+W    T A   P     D P++  E+ +AL     +K+ G DG+P++  KL   ++   SP+AK +  I+N +W  + +P++   S VV IPKKGD+ D NNYRGISL+ T+ KV+  I++ RL     ++ + +  QAGFR +EECV QA  L E+ +RRK+   +T++ F+D  KAYD VPH+AL  K+   G+
Sbjct:  324 LRKLRIKGRKDKIMLAGDFNKNTDSTVALLNRIGIGLRRATVTNSK---GSRMNGATMGRMIDHISFSGLINNPN----YTKVLKSVDLSDHLPVMAEWNIEALDSPT-----VPRKINVESIKELGESFVSNNRFAALTEP-----------------------------------EFNIEDL---------TSRLTKGIWESAEEVNAIKIEKISNSTVLSKETIKATNKRRKAFKR---LIGDPRTATE----YSDLKEKSIELCRLDRRNNRKAEVRKACDLMLGNKSRDLWSWLKRFSGRFRSSLIDG--PVYNNDH-KLITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTIAAVFPEC---DAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGI 806          
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Match: A0A1R1XFS6_9FUNG (LINE-1 reverse transcriptase-like protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XFS6_9FUNG)

HSP 1 Score: 179 bits (454), Expect = 7.710e-47
Identity = 105/295 (35.59%), Postives = 163/295 (55.25%), Query Frame = 1
Query:  793 YEETKKTAERLVRQDRRKTWTKALQTASAQ-MRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDTGVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASLDEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALLGILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLVMIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKATFLMFVDLKKAYDTVPHEALFAKLDFYGV 1674
            Y ++K  A + ++ DR+   TK+++  + Q +  D K++W++     G   +    G    K  +   L T   +    W  H+  LA D TGNSRS D+W    ++    +    D  I   ++  AL  +  +KA G DG+P++ LKL   +    S +AK +  I+NLM+    IP+  + S VV +PKKGD+ D +NYRGISL+ T+ K++  I++T+L++   ++ +    QAGFR  EEC  QA  L EI +RRK+Q K T+L ++D  KAYD VPH AL  KL   G+
Sbjct:   63 YIKSKSNANQSIKADRKAQHTKSIKKIADQILNNDSKSYWRYIKSNTGKSFQSIADGPVYDKFKN---LTTEKCEKIKIWTNHFGDLAKDATGNSRSTDKWENLISS-DCDYYPECDSTILWSDITNALHDMTNNKAPGADGVPSEVLKLVMTEPSPTSSLAKLIHKIINLMYDTGDIPQCLETSVVVLVPKKGDLKDPDNYRGISLIPTLAKLVAKIVATKLSKIDAKYQILVKEQAGFRNFEECAGQATTLYEIVRRRKIQNKETWLCYIDYSKAYDRVPHMALLHKLRSVGI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE2.640e-23061.11Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM1.930e-5931.24Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO1.270e-5431.51Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
L7JX89_TRAHO4.330e-5136.36RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R0GS88_9FUNG2.130e-4937.16LINE-1 reverse transcriptase-like protein n=1 Tax=... [more]
A0A1R1YP44_9FUNG8.100e-4929.33LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1J5WUS4_9MICR2.200e-4834.21Reverse transcriptase domain-containing protein n=... [more]
A0A498SLY1_ACAVI2.280e-4827.76Reverse transcriptase domain-containing protein n=... [more]
A0A1R1X7T5_9FUNG3.000e-4829.17RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1XFS6_9FUNG7.710e-4735.59LINE-1 reverse transcriptase-like protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1005contigP-littoralis_Contig1005:2285..4353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog45157.CMJ308CT
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size1963
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.95e-39
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1689
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.6724126-UTR-P-littoralis_Contig1005:2284..24711680789345.6724126-UTR-P-littoralis_Contig1005:2284..2471Pylaiella littoralis U1_48UTRP-littoralis_Contig1005 2285..2471 -
1680789345.711029-UTR-P-littoralis_Contig1005:4266..43531680789345.711029-UTR-P-littoralis_Contig1005:4266..4353Pylaiella littoralis U1_48UTRP-littoralis_Contig1005 4267..4353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.6854382-CDS-P-littoralis_Contig1005:2471..25721680789345.6854382-CDS-P-littoralis_Contig1005:2471..2572Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 2472..2572 -
1680789345.6998355-CDS-P-littoralis_Contig1005:2678..42661680789345.6998355-CDS-P-littoralis_Contig1005:2678..4266Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 2679..4266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1005.2.1prot_P-littoralis_Contig1005.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1005 2472..4266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1005.2.1

>prot_P-littoralis_Contig1005.2.1 ID=prot_P-littoralis_Contig1005.2.1|Name=mRNA_P-littoralis_Contig1005.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=563bp
MGDFNRVRTEVDRWLRRTPYPIKVMELREKDAELGTREHGSKRTIDHMVS
MMAHPEDHLRRPRVIRKVDISDHYPLVSTFRSDRADAATPAGFPVADGIG
VHVTREEGQPIRIECAALPMPGSYWYRKGGIRGQRNHQRMVHSTYWTPLL
DLLEEGEGDLDELDRQAVADAAATRMVDTAFQVAKAHRVTKLREPKRKPA
LKASIARAIDDRGKMYRRARKTRGDDANRTAAWAAYEETKKTAERLVRQD
RRKTWTKALQTASAQMRTDPKAFWKFSSDVAGWKRKDTGSGLQPVKHPDT
GVLMTGAADISASWKTHYERLASDVTGNSRSPDQWVKWTAAPQRPHLASL
DEPITMPELNEALLRLKRHKASGRDGLPADFLKLAAGDVGTESPMAKALL
GILNLMWKYQIIPEEWQDSTVVSIPKKGDVADMNNYRGISLMSTVLKVLV
MIISTRLNETFEEHNLFSHAQAGFRKKEECVTQAACLLEIAQRRKLQRKA
TFLMFVDLKKAYDTVPHEALFAKLDFYGVHKGAPYHRSCSIYSLMISWTE
PRHLEYRYRETM*
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mRNA from alignment at P-littoralis_Contig1005:2285..4353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1005.2.1 ID=mRNA_P-littoralis_Contig1005.2.1|Name=mRNA_P-littoralis_Contig1005.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2069bp|location=Sequence derived from alignment at P-littoralis_Contig1005:2285..4353- (Pylaiella littoralis U1_48)
GGGAGGGCGGGGAAGGAACCGCTGCGGACTATTCGATCGCAACTACGACG ACTACGGGAGCAATTCCCGCAGGACTCCATTGTGCTCATGGGGGATTTTA ACCGGGTCCGTACCGAGGTGGACCGGTGGCTACGCCGAACACCTTACCCG ATCAAGGTAATGGAGCTCAGGGAGAAGGACGCCGAACTGGGAACGCGCGA GCATGGATCCAAGCGGACGATTGACCACATGGTGTCCATGATGGCGCACC CCGAGGATCACCTCAGGCGTCCTCGGGTGATCAGGAAGGTGGACATATCC GACCACTACCCGCTGGTCAGCACGTTTAGGAGCGACCGGGCCGATGCGGC CACTCCGGCCGGCTTCCCAGTTGCCGACGGCATAGGTGTCCATGTCACAC GCGAGGAGGGCCAGCCCATCAGGATAGAATGCGCAGCATTACCGATGCCA GGATCGTACTGGTACAGGAAAGGAGGGATCCGGGGGCAGAGGAATCATCA ACGCATGGTACACTCTACGTACTGGACTCCCCTCCTAGACCTCCTCGAGG AAGGCGAGGGGGATCTTGATGAGCTGGACCGACAAGCTGTGGCAGATGCC GCGGCAACACGCATGGTGGACACGGCCTTCCAGGTCGCCAAAGCCCACCG CGTTACGAAACTAAGGGAACCCAAGCGGAAGCCGGCTCTCAAAGCCTCAA TCGCGCGGGCCATCGACGATCGAGGGAAGATGTACAGGCGCGCCAGAAAG ACCAGGGGAGATGACGCCAATAGGACCGCAGCATGGGCAGCATACGAGGA GACTAAGAAGACCGCCGAACGACTGGTTCGACAGGACCGCCGCAAAACAT GGACGAAAGCGCTCCAAACAGCGAGCGCGCAGATGCGTACTGATCCGAAA GCGTTCTGGAAATTCTCCTCGGATGTCGCTGGGTGGAAACGCAAGGATAC AGGCAGCGGACTCCAACCGGTGAAACACCCGGATACAGGTGTGCTGATGA CCGGCGCTGCCGACATTAGCGCGTCCTGGAAAACCCACTACGAGCGACTT GCTTCCGACGTTACAGGGAATAGCAGGTCCCCCGACCAATGGGTGAAATG GACCGCCGCGCCTCAGCGCCCCCACCTAGCATCGTTGGATGAACCAATAA CGATGCCCGAATTGAATGAAGCCCTCCTCCGACTTAAGAGACACAAGGCT TCCGGCCGGGACGGATTACCAGCAGATTTTCTGAAACTCGCGGCAGGTGA CGTGGGAACCGAGTCACCCATGGCCAAGGCCCTCCTAGGGATACTCAACC TAATGTGGAAATACCAGATTATCCCCGAGGAGTGGCAGGACTCCACGGTG GTCTCGATCCCCAAGAAAGGAGATGTCGCCGACATGAACAACTACCGAGG GATCTCGCTCATGAGCACCGTCCTTAAGGTACTTGTGATGATTATCAGCA CGCGCCTCAACGAGACCTTTGAAGAACACAACCTGTTCTCGCACGCACAA GCAGGATTTAGGAAGAAAGAGGAATGTGTGACCCAGGCCGCATGCCTCCT CGAGATCGCGCAACGACGCAAGCTCCAACGCAAGGCGACATTTCTCATGT TCGTCGATCTCAAGAAGGCCTACGACACGGTGCCGCACGAAGCGTTATTC GCCAAACTCGATTTTTACGGTGTGCGCGGGAACATGTTGGGTTTTATCCG CAAGCTGTATGCGAACAGCCGTATCTCTGTCCGGACCGGAGACCTTTTCT CGGAGACTTTTGGCCTGAAACGCGGGGTGAGACAAGGGTGCCCCCTATCA CCGGTCCTGTTCAATATATTCATTAATGATATCCTGGACGGAACCGAGAC ACTTGGAGTACCGGTATCGGGAAACAATGTAGAACGCAAAACTCGTGTCT CCGGACTTTTGTTCGCCGATGACCTTGTTGCTATCGCCTCAACCCGGAAC CGACTAGCTCAACTCGGGGATCGGCTGACCAAATGGTTGCAGGAGAACGA GATGTCAGCCGGGATTCACAAATGCGGGGTCATGGCCATTGGCGTGAGCA CGCGGCGACTCTCCTCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1005:2285..4353-

>mRNA_P-littoralis_Contig1005.2.1 ID=mRNA_P-littoralis_Contig1005.2.1|Name=mRNA_P-littoralis_Contig1005.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1689bp|location=Sequence derived from alignment at P-littoralis_Contig1005:2285..4353- (Pylaiella littoralis U1_48)
ATGGGGGATTTTAACCGGGTCCGTACCGAGGTGGACCGGTGGCTACGCCG
AACACCTTACCCGATCAAGGTAATGGAGCTCAGGGAGAAGGACGCCGAAC
TGGGAACGCGCGAGCATGGATCCAAGCGGACGATTGACCACATGGTGTCC
ATGATGGCGCACCCCGAGGATCACCTCAGGCGTCCTCGGGTGATCAGGAA
GGTGGACATATCCGACCACTACCCGCTGGTCAGCACGTTTAGGAGCGACC
GGGCCGATGCGGCCACTCCGGCCGGCTTCCCAGTTGCCGACGGCATAGGT
GTCCATGTCACACGCGAGGAGGGCCAGCCCATCAGGATAGAATGCGCAGC
ATTACCGATGCCAGGATCGTACTGGTACAGGAAAGGAGGGATCCGGGGGC
AGAGGAATCATCAACGCATGGTACACTCTACGTACTGGACTCCCCTCCTA
GACCTCCTCGAGGAAGGCGAGGGGGATCTTGATGAGCTGGACCGACAAGC
TGTGGCAGATGCCGCGGCAACACGCATGGTGGACACGGCCTTCCAGGTCG
CCAAAGCCCACCGCGTTACGAAACTAAGGGAACCCAAGCGGAAGCCGGCT
CTCAAAGCCTCAATCGCGCGGGCCATCGACGATCGAGGGAAGATGTACAG
GCGCGCCAGAAAGACCAGGGGAGATGACGCCAATAGGACCGCAGCATGGG
CAGCATACGAGGAGACTAAGAAGACCGCCGAACGACTGGTTCGACAGGAC
CGCCGCAAAACATGGACGAAAGCGCTCCAAACAGCGAGCGCGCAGATGCG
TACTGATCCGAAAGCGTTCTGGAAATTCTCCTCGGATGTCGCTGGGTGGA
AACGCAAGGATACAGGCAGCGGACTCCAACCGGTGAAACACCCGGATACA
GGTGTGCTGATGACCGGCGCTGCCGACATTAGCGCGTCCTGGAAAACCCA
CTACGAGCGACTTGCTTCCGACGTTACAGGGAATAGCAGGTCCCCCGACC
AATGGGTGAAATGGACCGCCGCGCCTCAGCGCCCCCACCTAGCATCGTTG
GATGAACCAATAACGATGCCCGAATTGAATGAAGCCCTCCTCCGACTTAA
GAGACACAAGGCTTCCGGCCGGGACGGATTACCAGCAGATTTTCTGAAAC
TCGCGGCAGGTGACGTGGGAACCGAGTCACCCATGGCCAAGGCCCTCCTA
GGGATACTCAACCTAATGTGGAAATACCAGATTATCCCCGAGGAGTGGCA
GGACTCCACGGTGGTCTCGATCCCCAAGAAAGGAGATGTCGCCGACATGA
ACAACTACCGAGGGATCTCGCTCATGAGCACCGTCCTTAAGGTACTTGTG
ATGATTATCAGCACGCGCCTCAACGAGACCTTTGAAGAACACAACCTGTT
CTCGCACGCACAAGCAGGATTTAGGAAGAAAGAGGAATGTGTGACCCAGG
CCGCATGCCTCCTCGAGATCGCGCAACGACGCAAGCTCCAACGCAAGGCG
ACATTTCTCATGTTCGTCGATCTCAAGAAGGCCTACGACACGGTGCCGCA
CGAAGCGTTATTCGCCAAACTCGATTTTTACGGTGTGCACAAGGGTGCCC
CCTATCACCGGTCCTGTTCAATATATTCATTAATGATATCCTGGACGGAA
CCGAGACACTTGGAGTACCGGTATCGGGAAACAATGTAG
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