prot_P-littoralis_Contig137.25.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig137.25.1
Unique Nameprot_P-littoralis_Contig137.25.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length117
Homology
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 6.980e-39
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    9 AISVARHRCLSSAPPGNRIPSAADLAPSAGTTA--VKVIDTKAGGG-LATEQDSVKLDACGTIEEDE-DEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            AI  ARHRCLSSA   +R P     APS G+ A  V V +TKAG G    +Q  VKLD CG IE+D  DEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF
Sbjct:   25 AIIFARHRCLSSASGDSRFP-----APSTGSAAHGVTVTETKAGAGDRPGQQGPVKLDLCGEIEDDVGDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-19
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 0
Query:   55 TEQDSVKLDACGTIEEDEDEEMEEMLQEGPAGK-EWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            T Q +VK D CG +EE EDE MEEM   GP+G+ EWGGPTRGG   EPTRFGDWERKGRC+DF
Sbjct:  104 TSQSAVKKDTCGEVEEAEDE-MEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.030e-17
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0
Query:   72 EDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            ++E+ EEM+ +GPAGKEWGGP RGG L EPTRFGDWERKGRC+DF
Sbjct:   95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A7S3ZNR7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.520e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 0
Query:   39 TTAVKVIDTKAGGGLATEQDS---VKLDACGTIEEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            ++A    D  AG  LA  +D     K++     E DED++ME+M  +   GKEWGGPTRGG + EPTRFGDWERKGR +DF
Sbjct:   39 SSAAAPADADAGATLAAPRDDPPPTKMNVAVDAEVDEDDDMEDMFVDTNMGKEWGGPTRGGRMPEPTRFGDWERKGRATDF 119          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-16
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   69 EEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            E+D++E+ME+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   47 EDDDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.890e-16
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   69 EEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            E+D++E+ME+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   48 EDDDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.580e-16
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   69 EEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            E+D++E+ME+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   43 EDDDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-16
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0
Query:   70 EDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            +DED++ E+M+  GP+G E+GGPTRGG L EPTRFGDWERKGRCSDF
Sbjct:   50 DDEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A5A8CC75_CAFRO (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC75_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-15
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0
Query:   64 ACGTIEEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            ACG ++ DED+++ +M+   PA  EWGGPTRGG + EPTRFGDWERKGRC+DF
Sbjct:   33 ACGEVD-DEDDDIVQMID--PATGEWGGPTRGGTMPEPTRFGDWERKGRCTDF 82          
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.560e-15
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   65 CGTIEE-DEDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 116
            CG  ++ +E +EMEEM  EGPAG EW GPTRGG   EPTRFGDWERKGR SDF
Sbjct:   60 CGPEDDPNELDEMEEMFIEGPAGLEWNGPTRGGKRPEPTRFGDWERKGRASDF 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.25.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM82_ECTSI6.980e-3970.54Succinate dehydrogenase assembly factor 4, mitocho... [more]
W7TYA2_9STRA1.070e-1969.84Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA2.030e-1775.56Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3ZNR7_9STRA9.520e-1750.62Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA1.400e-1668.75Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA2.890e-1668.75Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA3.580e-1668.75Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA4.200e-1672.34Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A5A8CC75_CAFRO1.170e-1564.15Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3GRS8_9STRA2.560e-1569.81Succinate dehydrogenase assembly factor 4, mitocho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Succinate dehydrogenase assembly factor 4PFAMPF07896DUF1674coord: 83..116
e-value: 9.2E-8
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:110884..117035 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.25.1mRNA_P-littoralis_Contig137.25.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig137 110868..118130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig137.25.1 ID=prot_P-littoralis_Contig137.25.1|Name=mRNA_P-littoralis_Contig137.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MEGVAVQYAISVARHRCLSSAPPGNRIPSAADLAPSAGTTAVKVIDTKAG
GGLATEQDSVKLDACGTIEEDEDEEMEEMLQEGPAGKEWGGPTRGGVLGE
PTRFGDWERKGRCSDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012875SDHF4