mRNA_P-littoralis_Contig137.20.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: D7FM81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM81_ECTSI) HSP 1 Score: 287 bits (734), Expect = 8.930e-89 Identity = 148/176 (84.09%), Postives = 157/176 (89.20%), Query Frame = 2
Query: 614 LDSKEQQRVAKALRKALGEHVDVSSPPPLLRSDLKGIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTEPLSVPESVLEHVAGRKTG-GMSFCNIL 1138
LDSKEQQRVAKALR+ALGE V+VSSPPPLLRS+LKGIKLRE +G RLILLCH+NEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSAT+LANETLVTALAYSGGQQGLLSIH+QKRFLTW KAPSE QV+C R LDG EP SVPESVLEH GR+ G SFCNIL
Sbjct: 7 LDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAYSGGQQGLLSIHIQKRFLTWNKAPSEAQVKCFRPPLDGTREPFSVPESVLEHSEGRQGGRASSFCNIL 182
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A836C8Z1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z1_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.240e-36 Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 2
Query: 608 IC-LDSKEQQRVAKALRKALGEHVDVSSPPPLLRSDLKGIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTEPLSVPESVLEHVAGRKTGGMSFCNIL 1138
+C D +E+++ +AL E V P L S+LKGIKLR + + L LL HF+EGRVLLTD+DG+YNDF++EA ++ GGN+ +A++ V T+ LA+E +V ALAYSGGQ+ +LSIH QKRFLTW K P+ V ++ + AL G L+VP+SV + + + FC IL
Sbjct: 14 VCGTDPRERKKTRRALAARFREQAVVGEQP-LTVSELKGIKLRGPKTD---LALLVHFSEGRVLLTDKDGLYNDFLLEAVKLAGGNLLIAVSGVETAPGTLAHEGVVQALAYSGGQRAVLSIHQQKRFLTWAKEPAPVHLDHIAAALAGNVRLLAVPDSVNMYSSALRR---RFCQIL 184
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A7S2XXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXL6_9STRA) HSP 1 Score: 124 bits (310), Expect = 7.210e-29 Identity = 72/176 (40.91%), Postives = 109/176 (61.93%), Query Frame = 2
Query: 614 LDSKEQQRVAKALRK-ALGEHVDVSSPPPLLRSDLKGIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTEPLSVPESVLEHVAGRKTGGMSFCNIL 1138
LD +E+ +++ + A GE V + PL R+ LK + L G D +I+LCH+NEGR+LLTD+DG+YN+FI EA + TGGNVF+ + +S+S LA++ +V++L S GQ + I +R LTW APS Q+E L+ A+ G +PL PE++L H +K +C +L
Sbjct: 11 LDRRERYVLSETMNGIACGEKKLVLNSNPLSRTMLKDMVLCSGPD----MIILCHYNEGRLLLTDQDGLYNNFIKEAVKATGGNVFLVVTGLSSSGGVLADKRVVSSLV-SNGQSSIQYIDSARRLLTWDGAPSRDQLEHLQLAVRGKVDPLETPETILRHCFAKKVKAF-YCVLL 180
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A7S1XMY7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMY7_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.570e-26 Identity = 76/179 (42.46%), Postives = 104/179 (58.10%), Query Frame = 2
Query: 626 EQQRVAKALRKA-----LGEHVDVSSPPPLLRSDLK-GIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTEPLSVPESVLEH--VAGRKTGGMSFCNIL 1138
E++ + KA+ K LG+ V V P LL DLK G+++ G D L++LCH+NEGRVLLTD DGMYNDF++ A R GGN+ + ++ V T +LAN V +L + G Q + ++ Q R LTW PS E + +AL G PL +PESV+E+ V GG CNIL
Sbjct: 123 ERRALVKAVEKVCKSAGLGD-VQVL-PEKLLLKDLKEGVEV--GADAS--LVILCHYNEGRVLLTDRDGMYNDFLVVAHRNCGGNILLVISGVETEGDSLANTAFVDSLVWEGAQNAMGELNTQGRLLTWKGTPSSAHKEQILKALQGQLSPLELPESVIEYANVTNGDKGGGFICNIL 295
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A7R9UAW8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAW8_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.720e-26 Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 2
Query: 758 LILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTEPLSVPESVLEHVAGRKTGGMSFCNIL 1138
L++LCH+NEGRVL+TD DGMYNDF++ A + GGNV + ++ V TS LAN + V +L + G Q + IH Q+R LTW +PS E + +A+ G EPL +P SVLEH + + C IL
Sbjct: 56 LVILCHYNEGRVLITDRDGMYNDFLVVASKNAGGNVLLVVSGVDTSDGELANTSFVDSLVWEGAQNAVGEIHTQRRLLTWNGSPSSFHKEHILKAVQGQLEPLQLPHSVLEHSSLAQPKKGFLCAIL 182
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A7S2SN66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN66_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.650e-23 Identity = 64/164 (39.02%), Postives = 93/164 (56.71%), Query Frame = 2
Query: 614 LDSKEQQRVAKALRKALGEHVDVSSPPPLLRSDLKGIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRAL--DGGTEPLSVPESVLEHVA 1099
LD +E + VA+AL ++ G V PL +++ + D +IL CHF EGR LLTD DG+YN F+ +A + GNVF+AL +ST LAN +V L + GGQ + SIH +RFLT+ P+E+Q++ + +L + PLSVP + H A
Sbjct: 17 LDPEEHRGVAEALERSTGCGAVVR---PLRLKEVRHFRFPRDTDTPDAIIL-CHFAEGRTLLTDTDGLYNAFLSQAVPMVHGNVFLALTNISTPPEVLANSEVVAELVHQGGQGSIGSIHSARRFLTFQDEPAELQLQHIASSLAHEAPVAPLSVPSGIETHAA 176
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A7S3JRP1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRP1_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.810e-19 Identity = 60/150 (40.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query: 758 LILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECLRRALDGGTE--PLSVPESVLEHVAGRKTGGMSFCNIL*LNACGVLSAQTVEISRRAWR 1201
+ILLCH+ +GR LLTD DG+YN F++EA TGG VFVAL V LA L+ L + G Q + +H QKRF TW PS+ QV + A E PL +P S+ EH A + G + +A G+ + +R AWR
Sbjct: 52 VILLCHYFDGRTLLTDNDGLYNTFLVEAVAATGGYVFVALTGVPAD-DRLARLDLINQLTHDG-QTSISELHRQKRFFTWDSFPSKAQVNIIVSAAKDEKEQCPLQLPISIKEHAAAYRQNGSAHSRKKLASANGIANH-----NRTAWR 194
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Match: A0A0G4EHK5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHK5_VITBC) HSP 1 Score: 65.5 bits (158), Expect = 1.140e-8 Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 2
Query: 701 LRSDLKGIKLREGRDEGRRLILLCHFNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATALANETLVTALAYSGGQQGLLSIHMQKRFLTWTKAPSEVQVECL 1033
+++ L+G L E R ++++ H NEGR+LLTD +G+YND + T NV + + V TS L + LV LA+ Q + ++ R +T+ + PS+ Q + L
Sbjct: 1 MKAQLRGFLLAE-RKTAVDMVVIVHRNEGRLLLTDRNGLYNDVLQACWHATNANVVIIVTKVPTSPDTLNDSALVATLAHHADQPTIGALSAAGRLITYDQTPSQRQADYL 110 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.20.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig137.20.2 >prot_P-littoralis_Contig137.20.2 ID=prot_P-littoralis_Contig137.20.2|Name=mRNA_P-littoralis_Contig137.20.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp MGRPSPTTSVGCVWQFQAVWLVATSFALSATAMLLWHSFMGVLHRFRSGRback to top mRNA from alignment at P-littoralis_Contig137:86304..91720- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig137.20.2 ID=mRNA_P-littoralis_Contig137.20.2|Name=mRNA_P-littoralis_Contig137.20.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5417bp|location=Sequence derived from alignment at P-littoralis_Contig137:86304..91720- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig137:86304..91720- >mRNA_P-littoralis_Contig137.20.2 ID=mRNA_P-littoralis_Contig137.20.2|Name=mRNA_P-littoralis_Contig137.20.2|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig137:86304..91720- (Pylaiella littoralis U1_48)back to top |