mRNA_P-littoralis_Contig137.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig137.11.1
Unique NamemRNA_P-littoralis_Contig137.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig137.11.1 vs. uniprot
Match: D7FM79_ECTSI (EsV-1-209 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM79_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.900e-54
Identity = 131/322 (40.68%), Postives = 159/322 (49.38%), Query Frame = 1 
Query:   25 LQKNHGIDFESVTNRPMRRAIFGDYVSSDAPSSSLEHVKQAYRFKDQAARTVPGDPVLALTFLRNVKFFTG-------------------AEMDC-------------DQTMSDIFWRTK------------------------------------------------------RVIHRVFSHEILSSAITSFLCPAEVK-----NMKSLVCSAK--RDACDARRRLRRELLKLGGIPNVSKLLEDAATSERVTRYERYSVCLDAVAVAKKLHEFHRLRGDPQARREMLSKALKAEGMSIRGDSAFCRDFVSGSTDVDLDEI 711
            L+ +H ID E VTN  ++ AIFGDY+ SD P +SL+  +QAYRFKDQAA+TVP DPV AL FL+NV+F T                    + +D              DQ M D FWRT                                                       RVI RV   E LS+AI SFLCPA+V+     +M+ L  +AK      DARRRL  E+ +LGGIP+V   LED A  ERVTR                      LRGDP ARREMLSKA++AEGMSIRGDSAFCR+F++GSTDVDL  +
Sbjct:   92 LKADHDIDPEMVTNEDLKNAIFGDYLDSDTPFTSLQDARQAYRFKDQAAKTVPADPVRALNFLQNVEFLTSQTTRAVPGDSVSVIQRALQSVVDALSSPGNNEVLGNDDQAMFDTFWRTNDIIQGVIGREGLSVAIVSFLNPEDVKRLEQSNMKRLVYNARFISEKCQARRRIGRVIQRVVGQEGLSAAIVSFLCPADVRRLQKSSMRQLASNAKFVSKRSDARRRLCCEIEQLGGIPDVGAFLEDPAVLERVTR----------------------LRGDPAARREMLSKAMEAEGMSIRGDSAFCREFINGSTDVDLGSL 391
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM79_ECTSI2.900e-5440.68EsV-1-209 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:66583..67599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size864
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSecreted protein
Ec32 orthologEc-16_004750.1
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789632.1710107-CDS-P-littoralis_Contig137:66582..669841680789632.1710107-CDS-P-littoralis_Contig137:66582..66984Pylaiella littoralis U1_48CDSP-littoralis_Contig137 66583..66984 +
1680789632.185118-CDS-P-littoralis_Contig137:67137..675991680789632.185118-CDS-P-littoralis_Contig137:67137..67599Pylaiella littoralis U1_48CDSP-littoralis_Contig137 67138..67599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.11.1prot_P-littoralis_Contig137.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig137 66583..67599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig137.11.1

>prot_P-littoralis_Contig137.11.1 ID=prot_P-littoralis_Contig137.11.1|Name=mRNA_P-littoralis_Contig137.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=288bp
KKLAKIERLQKNHGIDFESVTNRPMRRAIFGDYVSSDAPSSSLEHVKQAY
RFKDQAARTVPGDPVLALTFLRNVKFFTGAEMDCDQTMSDIFWRTKRVIH
RVFSHEILSSAITSFLCPAEVKNMKSLVCSAKRDACDARRRLRRELLKLG
GIPNVSKLLEDAATSERVTRYERYSVCLDAVAVAKKLHEFHRLRGDPQAR
REMLSKALKAEGMSIRGDSAFCRDFVSGSTDVDLDEIVGRLKLAKHLFEL
GGHRTWSTHREAANGKFKELYHMEGLDMKEAFEKSIKG
back to top

mRNA from alignment at P-littoralis_Contig137:66583..67599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig137.11.1 ID=mRNA_P-littoralis_Contig137.11.1|Name=mRNA_P-littoralis_Contig137.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1017bp|location=Sequence derived from alignment at P-littoralis_Contig137:66583..67599+ (Pylaiella littoralis U1_48)
AAGAAACTTGCCAAGATCGAGCGTCTCCAGAAGAACCACGGCATAGACTT
TGAGTCGGTCACCAACAGACCCATGAGGAGGGCCATTTTCGGCGACTACG
TGTCTTCCGATGCACCCTCCTCTTCGCTCGAGCACGTCAAGCAGGCCTAC
AGATTCAAGGACCAAGCTGCGAGGACGGTGCCCGGCGATCCCGTGCTGGC
CCTCACCTTCTTGAGGAACGTAAAGTTTTTCACCGGAGCCGAGATGGACT
GCGACCAAACCATGTCCGACATCTTCTGGCGCACCAAACGCGTCATCCAC
AGAGTATTCAGCCATGAGATATTGTCGTCGGCGATCACTTCGTTTCTGTG
CCCAGCGGAAGTCAAGAACATGAAATCGCTCGTCTGCAGCGCTAAACGCG
ATGTACAAAAGCGCACCGCCCTTGTTATCCAAGGCGTGATCAGTCAAGAC
GGCTTGGCGGCCGCGATCGTTTCGCTCCTGCGCCCGGCGGACGTGAAACG
ACTCCATCGGAGCAACATGAAACGCCTCGTCTATAGCGCAAGGCGCATCT
CCAAGGCATGTGACGCTCGCCGCAGGCTCAGGCGCGAACTCCTGAAGCTC
GGGGGCATACCCAACGTCAGCAAGTTACTGGAAGATGCTGCTACCTCCGA
GCGTGTGACGAGGTACGAGAGATATTCCGTGTGCTTGGACGCGGTGGCCG
TGGCGAAAAAGCTACACGAGTTTCACAGGCTGAGGGGAGATCCCCAAGCG
AGACGAGAGATGCTGTCCAAGGCTTTGAAAGCCGAGGGGATGAGCATCCG
AGGAGATAGCGCATTCTGTCGGGATTTTGTGAGTGGATCGACGGACGTAG
ACCTGGATGAAATTGTCGGTAGGTTAAAGCTCGCCAAGCATCTCTTCGAA
CTGGGGGGCCACCGCACCTGGTCGACGCACCGCGAGGCTGCGAATGGAAA
GTTCAAGGAACTCTATCACATGGAAGGGTTGGACATGAAAGAGGCCTTTG
AAAAGTCTATCAAGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig137:66583..67599+

>mRNA_P-littoralis_Contig137.11.1 ID=mRNA_P-littoralis_Contig137.11.1|Name=mRNA_P-littoralis_Contig137.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=864bp|location=Sequence derived from alignment at P-littoralis_Contig137:66583..67599+ (Pylaiella littoralis U1_48)
AAGAAACTTGCCAAGATCGAGCGTCTCCAGAAGAACCACGGCATAGACTT
TGAGTCGGTCACCAACAGACCCATGAGGAGGGCCATTTTCGGCGACTACG
TGTCTTCCGATGCACCCTCCTCTTCGCTCGAGCACGTCAAGCAGGCCTAC
AGATTCAAGGACCAAGCTGCGAGGACGGTGCCCGGCGATCCCGTGCTGGC
CCTCACCTTCTTGAGGAACGTAAAGTTTTTCACCGGAGCCGAGATGGACT
GCGACCAAACCATGTCCGACATCTTCTGGCGCACCAAACGCGTCATCCAC
AGAGTATTCAGCCATGAGATATTGTCGTCGGCGATCACTTCGTTTCTGTG
CCCAGCGGAAGTCAAGAACATGAAATCGCTCGTCTGCAGCGCTAAACGCG
ATGCATGTGACGCTCGCCGCAGGCTCAGGCGCGAACTCCTGAAGCTCGGG
GGCATACCCAACGTCAGCAAGTTACTGGAAGATGCTGCTACCTCCGAGCG
TGTGACGAGGTACGAGAGATATTCCGTGTGCTTGGACGCGGTGGCCGTGG
CGAAAAAGCTACACGAGTTTCACAGGCTGAGGGGAGATCCCCAAGCGAGA
CGAGAGATGCTGTCCAAGGCTTTGAAAGCCGAGGGGATGAGCATCCGAGG
AGATAGCGCATTCTGTCGGGATTTTGTGAGTGGATCGACGGACGTAGACC
TGGATGAAATTGTCGGTAGGTTAAAGCTCGCCAAGCATCTCTTCGAACTG
GGGGGCCACCGCACCTGGTCGACGCACCGCGAGGCTGCGAATGGAAAGTT
CAAGGAACTCTATCACATGGAAGGGTTGGACATGAAAGAGGCCTTTGAAA
AGTCTATCAAGGGG
back to top