mRNA_P-littoralis_Contig137.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig137.2.1
Unique NamemRNA_P-littoralis_Contig137.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig137.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig137contigP-littoralis_Contig137:1388..4436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.8182762-CDS-P-littoralis_Contig137:1387..15741680789631.8182762-CDS-P-littoralis_Contig137:1387..1574Pylaiella littoralis U1_48CDSP-littoralis_Contig137 1388..1574 -
1680789631.8315678-CDS-P-littoralis_Contig137:4356..44361680789631.8315678-CDS-P-littoralis_Contig137:4356..4436Pylaiella littoralis U1_48CDSP-littoralis_Contig137 4357..4436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig137.2.1prot_P-littoralis_Contig137.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig137 1388..4436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig137.2.1

>prot_P-littoralis_Contig137.2.1 ID=prot_P-littoralis_Contig137.2.1|Name=mRNA_P-littoralis_Contig137.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
LLEHGVSSCCRSVEGTTTTMSRKRTCRVLDEMTVEFRLSQLNDILQRTVE
TMRGDDVIQGKKAMAILQNWCGENCSFEKVFGSVRGMLP
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mRNA from alignment at P-littoralis_Contig137:1388..4436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig137.2.1 ID=mRNA_P-littoralis_Contig137.2.1|Name=mRNA_P-littoralis_Contig137.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3049bp|location=Sequence derived from alignment at P-littoralis_Contig137:1388..4436- (Pylaiella littoralis U1_48)
TTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGAAGGAACAAC
AACAACAATGTCGCGCAAGAGGACTTGTAGGCGAGAACACGTTTTGACAA
CTGCTGTTCTACCCCGTATATAAGTACCAGTATAGACTATTCTAAATAAA
TAGTACTGCTTGTACCATGTTGTATCAGTTGTATACATATATACGTATAC
TGGTGTCCATATATACGAAGTATATATATCCGCTGGTCCTCCGCTGCTGT
CGTTGCGAGTTGCTGCTGGCTGCTGCTGCTCTATGCGAGGGTATATGCGA
TAATACTACTTGACTGAGCTGTAGAATAGTGGTAGTATGCAACAGCAGCA
ACGACAGCAGTTTTTTGTACCGCTGCTGAGCTGCTGTAATCCGCGTACTG
CGTACTTATTCCTATATTAGGCCTTGCGTCACTCGCTCCTTTGTCTCCGT
GTTCTGTGCTGTAAGAAGGACAGGGTTTTTTCCGCACGACGGCGGTGGTA
ATGGTTGTACAGGAGAATGGACTGCCTCTTTCAAGAAATATATGGGATAC
AATATAGTGCCTGGTGTAAACGAAAACCCGAGATTGTCTGAGATTGTCTG
GGTCGTGTACAGATAACAGCGCGAGAAGTTCTATGCAAGGTCGTCACCGG
CATCCTGGAAGGCACGGCGTTGTGTGCGCATAAAATCTTGGTGAAAATGC
GTGATATAGTATGAAAAAAAAGGAAAACGACTCAACAGGGTATACCCTGG
TCATTTAGCGACACAGCAGGGTACATACTTTCTCACGAGCTGAAATGAGC
CATGCTCATTGGCCAAAGATCTAAAATACCCCGTTGTGACGCAATATCGG
CCGGGTATGCCCTGCTGAGGCTACTTTTCTCGAAAAGTGTACCCTGATTT
TTGGGAAGTACCCTATCGAGGCGGGAAATGAGACCCTTCGACCGTCCGTT
TCTCCCGCATTTCTCCCGCAGGAAATTACTTTCCGCAATTTCCGATCCCG
CCGAAGGGCACCAACCGCGACCGACCCGACCGACCTGCCGCCAACTGATC
CAACCATGGACATAGACTCTTTCCGTTCTAAACGAAATGGCTGACAATAC
CTGCCAGCCAGAGCCAGAGCACTGAGAGCACTGTTCTACAGAACCGAGGG
ACGCGGCCCCAAGAGACGTCATATAACACGTCATGTATGTATGCCACAGA
CAATGAATAACGAGATACGAGAACACGCTCTTCTTCCTTCTTGCTGACCT
AACCGACTGCTGTCCGGGGTCCCTCTACAGTATTACACTATGCACTCTAT
GCAGGGCCTTCTTGAAGAGGTAGAGACAACACACACAACAACAGACACAA
CGATTAAACAGATGAGGGTCTTTCCCTGCCGATTGCATGGATGGGTGGTC
GATGGGGACGCGGTGTGTGTGAGTAGGGCACACAAGACAAGCTGTTAGGA
GTCAAAAAGCAGCAAAGCTTGATCCATCTCCGGTATACGACTGCTATTAC
ACTACTGCTGCTGTGTCCTTTTGGAGCGGGGTGAGAGTAAGGAAATAAGG
CCCCAGACCGAACTGCCACACCAGTAGTCTAATCCCGTACTATGACGAGG
TCGTTTCAGACGAGATGCAAATAACAATAATACACACGCACGCGCACACA
CACCGCGTCCCCATCGACCACCCATCCATGCAATCGGCAGGGAAAGACCT
CATCTGTTTAATCGTTGTGTCTGTTGTTGTGTGTGTTGGCTCTACCTCTA
CAAGAAGGCCCTGCATAGAGTGCATAGTGTAATACTGTAGAGGGACCCCG
GACAGCAGTCGGTCAGGTCAGCAAGAAGGAAGAAGAGCGTGTTCTCGTAT
CTCGTTATTCATTGTCTGTGGCATACATACATGACGTGTTATATGACGTC
TCTTGGGGCCGCGTCCCTCGGTTCTGTAGAACAATGCTCTCAGTGCTCTG
GCTCTGGCTGGCAGGTATTGTCAGCCATTTCGTTTAGAACGGAAAGAGTC
TATGTCCATGGTTGGATCAGTTGGCGGCAGGTCGGTCGGGTCGGTCGCGG
TTGGTGCCCTTCGGCGGGATCGGAAATTGCGGAAAGTAATTTCCTGCGGG
AGAAATGCGGGAGAAACGGACGGTCGAAGGGTCTCATTTCCCGCCTCGAT
AGGGTACTTCCCAAAAATCAGGGTACACTTTTCGAGAAAAGTAGCCTCAG
CAGGGTATACCCGGCCGATATTGCGTCACAACGGGGTATTTTAGATCTTT
GACCAATGGGCATGGCTCATTTCAGCTCGTGAGAAAGTATGTACCCTGCT
GTGTCGCTAAATGACCAGGGTATACCCTGTTGAGTCGTTTTCCCAAAAAA
AAATCCTAAACGTCCGTATTTTGTTTTTTTTACAACCCACTAATTTCAAG
TCAAACGGCAGACTACGATTTTCTGTAAATATAATAAAGTATGACGGCAG
GTACAGCTGGGTGACATGTAGACCGATCAGAGACCCCCCACACAGCCGGT
CAGCGAGAGTTGTTGTGCCTGTCACAAGATCAGTGCTTAACCATGCAGTG
CTTGGATATGCCGAGGCCGTGTACCCTCTCTGTCAATGAGACGATCGTAC
GAAGTACGAAGTGCCGGGGTATGGCACAGCAGCGCTCATGTATGACATAA
TTTACTTCGTATGTTTTTTGTGCATTGCTGGCACTCTACACTTTGATACA
TAGGAGAGTAACGTAAAATCCAGGTGTCATGATACTGGTCCGAGGTCAAC
CGAAGTCTGCTTGCCCTCTCCGTCTCTGTCTCACTGTCTATAACATTCAG
GCTCATAGCTCATAATGATCAGGAAATGTGCCCTCGCGTGTGATTTGTAC
TCCTTCTTGTAGGGTTTTGGATGAAATGACCGTAGAATTCAGGCTGAGCC
AGCTCAATGACATACTGCAACGTACGGTGGAAACGATGAGAGGGGATGAT
GTCATACAGGGAAAGAAGGCGATGGCGATACTGCAGAATTGGTGCGGCGA
GAACTGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig137:1388..4436-

>mRNA_P-littoralis_Contig137.2.1 ID=mRNA_P-littoralis_Contig137.2.1|Name=mRNA_P-littoralis_Contig137.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig137:1388..4436- (Pylaiella littoralis U1_48)
TTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGAAGGAACAAC
AACAACAATGTCGCGCAAGAGGACTTGTAGGGTTTTGGATGAAATGACCG
TAGAATTCAGGCTGAGCCAGCTCAATGACATACTGCAACGTACGGTGGAA
ACGATGAGAGGGGATGATGTCATACAGGGAAAGAAGGCGATGGCGATACT
GCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGAAGGTCTTCGGCTCTG
TCCGTGGGATGCTACCG
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