mRNA_P-littoralis_Contig1368.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1368.3.1
Unique NamemRNA_P-littoralis_Contig1368.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 3.270e-124
Identity = 178/264 (67.42%), Postives = 207/264 (78.41%), Query Frame = 1
Query:   19 QILGRGNCFD-INQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHE------VSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            Q+LG+GNCFD + QLS MSKSMA  TFHKFC++FA EMF+EHIYLPTGTY DEVM  + +LG+T A GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GT+  R+GC+LIVDNGYHE       SKYP   +D AFS+ LESVRKDV C        FRILKLR+PYH RE ++NIFFTC ILHNMLH FDG+ VF+EN DW GSAG HD
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 297          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.560e-113
Identity = 162/270 (60.00%), Postives = 205/270 (75.93%), Query Frame = 1
Query:    1 QILTALQILGRGNCF-DINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHE------VSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            ++L  LQIL RGNCF DI  +S +S   AA TFH+F + FA+EM+ EHI+LPTG YQ +VM  Y +LGF+ A GSTDVTH+ WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT  FTG+TNDK+I+RYD AV  IR + +Y ++E+ +  ADGT +  KGCYL+VDNGYH+       SKYP D +D AFSK LESVRKDVEC FGI+KGRFRILKL +PYH +EDI+N+FFTC ILHNMLH +D  S  +E  +WAG+AGLH+
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHN 427          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.150e-112
Identity = 163/237 (68.78%), Postives = 191/237 (80.59%), Query Frame = 1
Query:   16 LQILGRGNCFD-INQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLH 723
            L++LG+GNCFD + QLS MS+S+A   FHKFC++ A EMF+EHIYLPTGTY DEVM  + +LG T A GSTDVTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT  F G TNDKT +RYD+ V  IR    Y +REYKLR+ +GTE TR+GC+LIVDNGY+E +      +D AFS+ LESVRKDVEC FGILKGRFRILKLR+PYH RE I+NIFFTC ILHNMLH
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESN------EDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLH 367          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.430e-109
Identity = 162/259 (62.55%), Postives = 189/259 (72.97%), Query Frame = 1
Query:   16 LQILGRGNCFD-INQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            L +LG+GNCFD + QLS MS SMA  TFHKFC++FA EMF+EHI+ PT TY DE M  + +LG T A  STDVTH+   MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT  FTGA NDKT++ YD+ V  IR    Y +R+YKLR+A+GTE TR+GC+ IVDNGYHE                      DVEC FGILKGRFRILKLR+PYH RE I+NIFFTC I HNMLH FDG+ +F+EN DW GSAG HD
Sbjct:  102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE----------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGLDLFEENTDWTGSAGHHD 338          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 6.140e-106
Identity = 158/270 (58.52%), Postives = 195/270 (72.22%), Query Frame = 1
Query:    1 QILTALQILGRGNCF-DINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHE------VSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            Q+L  LQIL RGN F DI  +S +S    A TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF  A+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+       SK P D  D  FSK LES RKDVEC FGILKGRFRI KL + +H +E I+N+FFTC ILHNMLH FD      E  +WAGSAGLH+
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 352          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 3.940e-104
Identity = 157/270 (58.15%), Postives = 195/270 (72.22%), Query Frame = 1
Query:    1 QILTALQILGRGNCF-DINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHE------VSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            ++L  LQIL RGN F DI  +S +S    A TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF  A+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+       SK P D  D  FSK LES RKDVEC FGILKGRFRI KL + +H +E I+N+FFTC ILHNMLH FD      E  +WAGSAGLH+
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 443          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 2.200e-100
Identity = 170/319 (53.29%), Postives = 194/319 (60.82%), Query Frame = 1
Query:   97 HKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNG----------YHE---------------------VSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYH-------------------------------------C--------------------REDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            HKFC++FA EMF+EHIYL TGTY DEVM  + +LG T A GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GTE TR+GC+LIVDNG          +H+                      SKYP   +D AFS+ LESVRKDVEC FGILKGRFRILKLR+PYH                                     C                    RE I+NIFFTC ILHNMLH FDG+ VF+EN DW GSAG HD
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTGGXFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHD 564          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 6.790e-99
Identity = 152/269 (56.51%), Postives = 188/269 (69.89%), Query Frame = 1
Query:    1 QILTALQILGRGNCF-DINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYH------EVSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAG 780
            ++L  L ILGRGNCF  I Q+S MS       FHKFCK+FA+EM++EHIYLP+      D VM  Y +LGF+ A+GS DVTH+GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+ FT +TNDKT V +DA V+ IR +  Y ++ + +   DGT  T KGCYL+VDNGYH      E +KYP   +D  FSK LESVRKDVEC FGILKG FRI K+ + YH +E I+N+FFTC ILHNMLH FDG+    EN  W  SAG
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAG 366          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 3.370e-97
Identity = 157/298 (52.68%), Postives = 193/298 (64.77%), Query Frame = 1
Query:    1 QILTALQILGRGNCF-DINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRRADGTEFTRKGCYLIVDNGYH------EVSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGL 783
            ++L  L ILGRGNCF  I Q+S MS       FHKFC++FA+EM++E I+LPT      D VM  Y +LGFT A+GS DVTH+ W  CP+   RS+TGKEGFPT+A++VTVDHAGRAI VT+ FTG+TNDKTIV +D AV+ I  +K Y                             ++ + +   DGT  T KGCYL+VDNGYH      E SKYP   +D  FSK LESVRKDVEC FGILKGRFRILKL + Y  +E I+N+FFTC+ILHNMLH FDG+    EN +W  SAG+
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGV 382          
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 1.310e-96
Identity = 150/258 (58.14%), Postives = 175/258 (67.83%), Query Frame = 1
Query:   19 QILGRGNCFD-INQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSKYPGDVDDAAFSKMLESVRKDVECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFKENVDWAGSAGLHD 789
            ++LG+G CFD + QLS MSKSMA  TFHKF ++FA EMF+EHIYLPTGTY DEVM  + +LG T A GSTDVTH+GW MCPFTLGR FTGKEGFPT+A+EVTVDHAGR + V   FTGATNDKT +RYD+ V  IR        EYKLR+  G         +++D G                    + V +      GILKGRFRILKLR+PYH RE I+NIFFTC ILHNMLH FDG+ VF+EN DW GSAG  D
Sbjct:    3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVDHAGRTLAVANGFTGATNDKTTIRYDSGVNNIRT-------EYKLRQ--GERHRANAPRMVIDGG--------------------QRVPRGCGVLLGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFEENTDWPGSAGHLD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1368.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K796_9PHAE3.270e-12467.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.560e-11360.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE1.150e-11268.78DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K872_9PHAE1.430e-10962.55DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KY50_9PHAE6.140e-10658.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.940e-10458.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE2.200e-10053.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE6.790e-9956.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.370e-9752.68DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JIW4_9PHAE1.310e-9658.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1368contigP-littoralis_Contig1368:9082..10462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size789
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.07e-87
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size789
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.6922612-CDS-P-littoralis_Contig1368:9081..96151680789631.6922612-CDS-P-littoralis_Contig1368:9081..9615Pylaiella littoralis U1_48CDSP-littoralis_Contig1368 9082..9615 +
1680789631.712001-CDS-P-littoralis_Contig1368:10207..104621680789631.712001-CDS-P-littoralis_Contig1368:10207..10462Pylaiella littoralis U1_48CDSP-littoralis_Contig1368 10208..10462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1368.3.1prot_P-littoralis_Contig1368.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1368 9082..10462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1368.3.1

>prot_P-littoralis_Contig1368.3.1 ID=prot_P-littoralis_Contig1368.3.1|Name=mRNA_P-littoralis_Contig1368.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=263bp
QILTALQILGRGNCFDINQLSLMSKSMAAVTFHKFCKNFAKEMFEEHIYL
PTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFTGKEGFP
TLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDRE
YKLRRADGTEFTRKGCYLIVDNGYHEVSKYPGDVDDAAFSKMLESVRKDV
ECPFGILKGRFRILKLRLPYHCREDIENIFFTCFILHNMLHYFDGISVFK
ENVDWAGSAGLHD
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mRNA from alignment at P-littoralis_Contig1368:9082..10462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1368.3.1 ID=mRNA_P-littoralis_Contig1368.3.1|Name=mRNA_P-littoralis_Contig1368.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-littoralis_Contig1368:9082..10462+ (Pylaiella littoralis U1_48)
CAGATCTTGACGGCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACAT CAACCAGCTGTCGTTAATGAGCAAATCGATGGCGGCAGTAACGTTCCACA AATTCTGCAAGAACTTCGCGAAGGAGATGTTCGAGGAGCATATCTACCTT CCAACAGGAACGTACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGG TTTTACTACGGCAATCGGTTCTACCGACGTCACTCACGTCGGCTGGGGCA TGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCA ACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCGT CACCCAAGAGTTCACCGGTGCGACCAACGACAAGACGATCGTCCGCTACG ACGCAGCCGTACAGACCATCAGGAACAACAAAGTGTACAAGGATCGAGAG TACAAGCTCAGGAGGGCGGATGGCACGGAGTTCACCCGGAAAGGATGCTA TTTGATCGTCGACAACGGCTATCACGAGGTGAGTGTATTGGGGGCGTGAG TAGTATAGAATATCCGAACGTAGTGCGTGCTCCGTGACGCTTCTGGTTGA TGTGAAGCCCGAAAAAAAACACGCTGGTACACCGAAAGCAGACCAATGCC ATATTTGTCGGTACTGAATGAGGATCCTTATGGCATGTCGGCCCCGTGCA TCGGGCGTCGACCTTACTTAGGCAGCGGCACACCAAGGTAAAAAACATTT TGCCGCTTCGCGTTCATTCTATTCGTATTTATTTTTGTGCTGGATCTGTT TGGACGGTTGCGTTCACGTTCTTACATTTCGAGCATACATTACCCCATTT ATAACACCAAAGGTTTAAAAAACAAATCTGCTCAGGGGTGATCAGATGGC AAATATTGTACTTCGAAGAACAAAGTTGTAGGCATCTGTGTTGTCCACAT GTCAACACGGTTCCTCGTTCCCCCCGAAGAGTTTGATCGTGAAAATATGT GCGTCGGGGCCTGAGGTTTCCAGAGCCTCTCCGTAGCTCACCAGTCGTCC CTTTCGACTCCCCCCCCTGCTGCTGTTGTGCCGTCGTGTGCCAAATCAAC ACTGGGTCACCCTCATAGCCCCATAGAAGTACCCGGGTGACGTGGATGAC GCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTCC CTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCGCCTGCCCT ACCACTGCAGGGAAGACATCGAAAACATCTTCTTCACGTGCTTCATTCTC CACAACATGCTCCACTACTTCGACGGCATTAGCGTGTTCAAGGAGAACGT CGACTGGGCAGGCAGCGCTGGTCTGCACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1368:9082..10462+

>mRNA_P-littoralis_Contig1368.3.1 ID=mRNA_P-littoralis_Contig1368.3.1|Name=mRNA_P-littoralis_Contig1368.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig1368:9082..10462+ (Pylaiella littoralis U1_48)
CAGATCTTGACGGCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACAT
CAACCAGCTGTCGTTAATGAGCAAATCGATGGCGGCAGTAACGTTCCACA
AATTCTGCAAGAACTTCGCGAAGGAGATGTTCGAGGAGCATATCTACCTT
CCAACAGGAACGTACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGG
TTTTACTACGGCAATCGGTTCTACCGACGTCACTCACGTCGGCTGGGGCA
TGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCA
ACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCGT
CACCCAAGAGTTCACCGGTGCGACCAACGACAAGACGATCGTCCGCTACG
ACGCAGCCGTACAGACCATCAGGAACAACAAAGTGTACAAGGATCGAGAG
TACAAGCTCAGGAGGGCGGATGGCACGGAGTTCACCCGGAAAGGATGCTA
TTTGATCGTCGACAACGGCTATCACGAGGTGAGTAAGTACCCGGGTGACG
TGGATGACGCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTG
GAGTGTCCCTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCG
CCTGCCCTACCACTGCAGGGAAGACATCGAAAACATCTTCTTCACGTGCT
TCATTCTCCACAACATGCTCCACTACTTCGACGGCATTAGCGTGTTCAAG
GAGAACGTCGACTGGGCAGGCAGCGCTGGTCTGCACGAC
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