mRNA_P-littoralis_Contig1367.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1367.7.1
Unique NamemRNA_P-littoralis_Contig1367.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.650e-42
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGEVWMVNVDECIKLVATI 674
            AM   KI P G   V+VT Q  VGG  ++LWVNR++ KI +L DGS SAWP ADFQGW+   +++V RLFVL YLLAGC+FLPA+SGLPF K+W++ALK+VRAEGV  R  F  E  VW V++++ IKL+ATI
Sbjct:   10 AMSTGKIPPNGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWIPTADEKV-RLFVLIYLLAGCDFLPAISGLPFYKVWILALKSVRAEGVFNRSLFVMEDGVWTVDIEQSIKLLATI 141
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BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5JYK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.450e-42
Identity = 78/137 (56.93%), Postives = 102/137 (74.45%), Query Frame = 3 
Query:  273 RAMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAE--GVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            RAM    ++PRG GAV+VT Q  VGG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK VR E  G+  +P FF+E +  W V VDEC KL+AT+
Sbjct:    5 RAMTTGWLRPRGEGAVDVTVQRVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKIVRTEAAGLFDKPLFFEEQDGTWAVEVDECAKLLATM 140
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BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5L3R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.320e-41
Identity = 75/134 (55.97%), Postives = 101/134 (75.37%), Query Frame = 3 
Query:  279 MIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDG-SISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            M A  ++PRG GAVEVT Q  VGG  ++LW+NR+F  I EL DG S SAWP   F+GW+  DND+V RLFVL +L +GC++LPA SGLPF+K+WV+ALK+VR +G+  +P FF+E +  W V+VDEC K++AT+
Sbjct:    1 MTAGWLRPRGEGAVEVTVQKVVGGKTKFLWMNRVFASIYELQDGRSESAWPLLTFRGWIPTDNDKV-RLFVLMFLESGCDYLPANSGLPFDKIWVLALKSVRTQGLFHKPLFFEEQDGTWAVHVDECAKILATM 133
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BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5JME2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 7.230e-40
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GAV+VT Q  VGG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK+VR EG+  +P FF+E +  W V VDEC KL+AT+
Sbjct:  503 AMTTGWLRPRGEGAVDVTVQRVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKSVRTEGLFDKPLFFEEQDGTWAVEVDECAKLLATM 635
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BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5JEG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG1_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.060e-39
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GAV+VT Q  VGG  + LW+N++F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK+VR EG+  RP FF+E +  W V+VDEC KL+AT+
Sbjct:  332 AMTTGWLRPRGEGAVDVTVQKVVGGETKLLWINKVFASICELQDGSESAWPLLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKSVRTEGLFGRPLFFEEQDGTWAVHVDECAKLLATM 464
[Close]
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.150e-39
Identity = 77/134 (57.46%), Postives = 103/134 (76.87%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GAV+VT Q  VGG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK+VR EG+  RP FF+E +  W V+V+EC KL+AT+
Sbjct:  598 AMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKSVRTEGLFDRPLFFEEEDGTWAVHVNECAKLLATM 730
[Close]
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.430e-39
Identity = 77/134 (57.46%), Postives = 103/134 (76.87%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GAV+VT Q  VGG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK+VR EG+  RP FF+E +  W V+V+EC KL+AT+
Sbjct: 1617 AMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKSVRTEGLFDRPLFFEEEDGTWAVHVNECAKLLATM 1749
[Close]
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5KI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI96_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.000e-39
Identity = 72/134 (53.73%), Postives = 101/134 (75.37%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GA++VT Q  +GG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DND+V RLFVL++L +GC++LPA+SGLPF+KMWV+ALK+V+ E +  +P FF E +  W V+VDEC +L+AT+
Sbjct:   77 AMTTGWLRPRGEGAIDVTVQKVLGGETKFLWMNRVFASICELQDGSESAWPLLTFRGWIPTDNDKV-RLFVLTFLESGCDYLPAISGLPFDKMWVLALKSVQTEVLFDKPLFFDEQDGTWAVHVDECAQLLATM 209
[Close]
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5JQD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD3_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.620e-38
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGEVWMVNVDECIKLVATI 674
            AM   KI P G   V+VT Q  VGG  ++LWVNR++ KI +L DGS SAWP ADFQGW +   D  VRLFVL YLLAGC+FLPA+SGLPF KMW++ALK+VRAEGV     F  E  VW VN+++ I L+A I
Sbjct:  245 AMSTGKILPYGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGW-TPTADEKVRLFVLIYLLAGCDFLPAISGLPFYKMWILALKSVRAEGVFNHALFVMEDGVWTVNIEQSINLLAII 376
[Close]
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Match: A0A6H5JHH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH4_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.370e-38
Identity = 76/134 (56.72%), Postives = 101/134 (75.37%), Query Frame = 3 
Query:  276 AMIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWPGADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNVRAEGVCKRPRFFQEGE-VWMVNVDECIKLVATI 674
            AM    ++PRG GAV+VT Q  VGG  ++LW+NR+F  I EL DGS SAWP   F+GW+  DN   VRLFVL++L  GC++LPA+SGLPF+KMWV+ALK+VR EG+  +P FF+E + +W V+VDEC KL+AT+
Sbjct:  253 AMATGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPLLTFRGWIPTDNK--VRLFVLTFLDLGCDYLPAISGLPFDKMWVLALKSVRTEGLFDKPLFFEEQDGMWAVHVDECAKLLATM 384
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1367.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR74_9PHAE3.650e-4258.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK0_9PHAE7.450e-4256.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3R3_9PHAE5.320e-4155.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME2_9PHAE7.230e-4057.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEG1_9PHAE1.060e-3957.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE1.150e-3957.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.430e-3957.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI96_9PHAE6.000e-3953.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQD3_9PHAE1.620e-3858.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH4_9PHAE2.370e-3856.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1367contigP-littoralis_Contig1367:17729..18997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1269
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.598042-UTR-P-littoralis_Contig1367:17728..180061680789631.598042-UTR-P-littoralis_Contig1367:17728..18006Pylaiella littoralis U1_48UTRP-littoralis_Contig1367 17729..18006 +
1680789631.6174448-UTR-P-littoralis_Contig1367:18549..189971680789631.6174448-UTR-P-littoralis_Contig1367:18549..18997Pylaiella littoralis U1_48UTRP-littoralis_Contig1367 18550..18997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.6079504-CDS-P-littoralis_Contig1367:18006..185491680789631.6079504-CDS-P-littoralis_Contig1367:18006..18549Pylaiella littoralis U1_48CDSP-littoralis_Contig1367 18007..18549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1367.7.1prot_P-littoralis_Contig1367.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1367 18007..18549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1367.7.1

>prot_P-littoralis_Contig1367.7.1 ID=prot_P-littoralis_Contig1367.7.1|Name=mRNA_P-littoralis_Contig1367.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
MIAEKIKPRGPGAVEVTAQIFVGGIPRYLWVNRLFIKIGELDDGSISAWP
GADFQGWMSHDNDRVVRLFVLSYLLAGCNFLPAMSGLPFEKMWVVALKNV
RAEGVCKRPRFFQEGEVWMVNVDECIKLVATICSSLRTRLRFVVAGEQQG
AFLPTSKRMYRASSTSSEPLSSTSTVRRRH*
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mRNA from alignment at P-littoralis_Contig1367:17729..18997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1367.7.1 ID=mRNA_P-littoralis_Contig1367.7.1|Name=mRNA_P-littoralis_Contig1367.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-littoralis_Contig1367:17729..18997+ (Pylaiella littoralis U1_48)
CACACACCAAGCGCCGCTAGGAAGAGATAAACGGGAAATTCCGGTGCGCG
TGTCCGGGGGGTGGGAGGAAGGACAGGATAGGAGAATTAATGGTGAAAAA
AGCGCGTGTCGAGCGGGCAACAGTCGGATGGGGCGAGTAGGCAACCATAG
GTTGGAGTGGGGAGGCTACCCGACTACAATTAAATATTGCGGACGAGGAA
TACAAAACGCAACAGGAAGAAGCCAAAGCAGGGAGCATCTCGTAGAGATC
GGGTGATGGCCGAACACCAGCGAGAGCAATGATCGCGGAGAAAATCAAGC
CTCGGGGTCCGGGGGCGGTGGAGGTGACCGCGCAGATATTTGTGGGTGGT
ATCCCCAGGTACCTGTGGGTGAACAGGTTGTTCATCAAAATCGGGGAGCT
TGATGACGGGAGTATTTCGGCGTGGCCCGGAGCGGACTTCCAGGGTTGGA
TGTCCCATGATAACGACAGGGTCGTCCGCCTTTTCGTCCTTTCCTACCTC
CTAGCGGGGTGCAACTTCCTGCCGGCCATGTCCGGTCTCCCCTTCGAGAA
AATGTGGGTAGTCGCCCTGAAGAATGTGCGGGCCGAGGGTGTGTGTAAGC
GGCCGCGATTCTTTCAAGAAGGCGAGGTGTGGATGGTGAATGTCGACGAG
TGCATCAAGCTCGTGGCGACCATATGTTCTTCGTTAAGAACGAGGCTGCG
TTTCGTCGTGGCGGGAGAACAGCAGGGGGCATTCTTGCCGACGTCAAAGA
GAATGTACAGGGCTTCGTCGACGTCATCCGAGCCGTTATCTTCAACATCA
ACCGTACGAAGACGACATTAACTTGCCCGGGTATCGAGTCGATGCGTCTG
CAGAGCGAGCGGGCCAACACCGTCATGGCGTACTGGCAGGACGGGCTGAA
AGAGACAATGCCAAAGAGATAATTTAAAGCCAAAGGTTGGGGTGTTTACC
CAAAGGCTAAGGAGCGCGAGGAGAAAGAACTCACGGGGAAAAAATTGTCT
CGAAAAAGTTGACGCGGGACTGACAGGGATTTTTCCGAACCCTCCTTCCA
TGAAAAACATGAGATGAGCAGGACAGAAGAGAAGGAATTTGCAGAGCAAA
AAAATAAAACGCGTGTTTGATTATCCCCTGCCTATGGGCTGACTGTATTT
TCGCCGTCGTCGTTCCCAGTCGCCGCCACCAATCTCTTGCTGTGAATCAG
CGACCACACCCAACAGAGAGGGGCATTGTAAGGTAAAATGTAGTGGCGGC
CATTTGGGAAATTGGGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1367:17729..18997+

>mRNA_P-littoralis_Contig1367.7.1 ID=mRNA_P-littoralis_Contig1367.7.1|Name=mRNA_P-littoralis_Contig1367.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig1367:17729..18997+ (Pylaiella littoralis U1_48)
ATGATCGCGGAGAAAATCAAGCCTCGGGGTCCGGGGGCGGTGGAGGTGAC
CGCGCAGATATTTGTGGGTGGTATCCCCAGGTACCTGTGGGTGAACAGGT
TGTTCATCAAAATCGGGGAGCTTGATGACGGGAGTATTTCGGCGTGGCCC
GGAGCGGACTTCCAGGGTTGGATGTCCCATGATAACGACAGGGTCGTCCG
CCTTTTCGTCCTTTCCTACCTCCTAGCGGGGTGCAACTTCCTGCCGGCCA
TGTCCGGTCTCCCCTTCGAGAAAATGTGGGTAGTCGCCCTGAAGAATGTG
CGGGCCGAGGGTGTGTGTAAGCGGCCGCGATTCTTTCAAGAAGGCGAGGT
GTGGATGGTGAATGTCGACGAGTGCATCAAGCTCGTGGCGACCATATGTT
CTTCGTTAAGAACGAGGCTGCGTTTCGTCGTGGCGGGAGAACAGCAGGGG
GCATTCTTGCCGACGTCAAAGAGAATGTACAGGGCTTCGTCGACGTCATC
CGAGCCGTTATCTTCAACATCAACCGTACGAAGACGACATTAA
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