mRNA_P-littoralis_Contig1366.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1366.6.1
Unique NamemRNA_P-littoralis_Contig1366.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1366.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1366contigP-littoralis_Contig1366:9086..9666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size569
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.3857238-UTR-P-littoralis_Contig1366:9085..91651680789631.3857238-UTR-P-littoralis_Contig1366:9085..9165Pylaiella littoralis U1_48UTRP-littoralis_Contig1366 9086..9165 +
1680789631.4426613-UTR-P-littoralis_Contig1366:9525..96661680789631.4426613-UTR-P-littoralis_Contig1366:9525..9666Pylaiella littoralis U1_48UTRP-littoralis_Contig1366 9526..9666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.4057252-CDS-P-littoralis_Contig1366:9165..93591680789631.4057252-CDS-P-littoralis_Contig1366:9165..9359Pylaiella littoralis U1_48CDSP-littoralis_Contig1366 9166..9359 +
1680789631.4329174-CDS-P-littoralis_Contig1366:9371..95251680789631.4329174-CDS-P-littoralis_Contig1366:9371..9525Pylaiella littoralis U1_48CDSP-littoralis_Contig1366 9372..9525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1366.6.1prot_P-littoralis_Contig1366.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1366 9166..9525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1366.6.1

>prot_P-littoralis_Contig1366.6.1 ID=prot_P-littoralis_Contig1366.6.1|Name=mRNA_P-littoralis_Contig1366.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MGFICLRERKMFAVTGWEFCCNVPGRSYFYFFVTCRVGIFCFTFGCRGGA
FFFFFAVHLSAPGGCHAPVNQFRCCVPGISYFVVMCQDGARDTAVILEKQ
PQRCEHSPRCGPNIF*
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mRNA from alignment at P-littoralis_Contig1366:9086..9666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1366.6.1 ID=mRNA_P-littoralis_Contig1366.6.1|Name=mRNA_P-littoralis_Contig1366.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=581bp|location=Sequence derived from alignment at P-littoralis_Contig1366:9086..9666+ (Pylaiella littoralis U1_48)
TTGACGGGGACGGGAGGAAATCCCGGCGCACGTAATTGTTTTGTTTCGCC
AGTAATTAGTGCCGAAATTGCCGCAAACGGATGGGATTTATTTGTTTACG
GGAAAGGAAAATGTTTGCCGTGACGGGGTGGGAGTTTTGTTGCAACGTGC
CGGGGCGTTCTTATTTTTATTTTTTTGTGACATGTCGGGTCGGGATATTT
TGTTTTACTTTCGGGTGTCGGGGCGGGGCGTTTTTTTTTTTTTTTGCTGT
TCACCTGTCGGCACCGGGTGGTTGCTTGTTTTCATTCCACGCGCCGGTAA
ATCAGTTTCGTTGTTGCGTGCCGGGGATCAGTTATTTTGTCGTTATGTGC
CAGGACGGGGCTAGGGATACAGCAGTTATTTTGGAGAAACAGCCACAACG
TTGCGAGCATTCACCGAGATGCGGTCCGAATATCTTTTGAGGTATCCTTT
TGTGTGTGTCAAAAAAGAAGGGTGCCCGCAGGTAGTGAGTTCATGATTTA
TTTGTTTTTTGTCGTCGGTGCCGGTAACCGAAGGGGATTGTCGACGTTCA
CGTTGCGCATATCTTCGTAGCATTGGTATGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1366:9086..9666+

>mRNA_P-littoralis_Contig1366.6.1 ID=mRNA_P-littoralis_Contig1366.6.1|Name=mRNA_P-littoralis_Contig1366.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1366:9086..9666+ (Pylaiella littoralis U1_48)
ATGGGATTTATTTGTTTACGGGAAAGGAAAATGTTTGCCGTGACGGGGTG
GGAGTTTTGTTGCAACGTGCCGGGGCGTTCTTATTTTTATTTTTTTGTGA
CATGTCGGGTCGGGATATTTTGTTTTACTTTCGGGTGTCGGGGCGGGGCG
TTTTTTTTTTTTTTTGCTGTTCACCTGTCGGCACCGGGTGGTTGCCACGC
GCCGGTAAATCAGTTTCGTTGTTGCGTGCCGGGGATCAGTTATTTTGTCG
TTATGTGCCAGGACGGGGCTAGGGATACAGCAGTTATTTTGGAGAAACAG
CCACAACGTTGCGAGCATTCACCGAGATGCGGTCCGAATATCTTTTGA
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