mRNA_P-littoralis_Contig1366.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1366.1.1
Unique NamemRNA_P-littoralis_Contig1366.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1366.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1366contigP-littoralis_Contig1366:2225..2509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.315584-UTR-P-littoralis_Contig1366:2224..22791680789631.315584-UTR-P-littoralis_Contig1366:2224..2279Pylaiella littoralis U1_48UTRP-littoralis_Contig1366 2225..2279 -
1680789631.3452466-UTR-P-littoralis_Contig1366:2432..25091680789631.3452466-UTR-P-littoralis_Contig1366:2432..2509Pylaiella littoralis U1_48UTRP-littoralis_Contig1366 2433..2509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.3268456-CDS-P-littoralis_Contig1366:2279..24051680789631.3268456-CDS-P-littoralis_Contig1366:2279..2405Pylaiella littoralis U1_48CDSP-littoralis_Contig1366 2280..2405 -
1680789631.3352876-CDS-P-littoralis_Contig1366:2417..24321680789631.3352876-CDS-P-littoralis_Contig1366:2417..2432Pylaiella littoralis U1_48CDSP-littoralis_Contig1366 2418..2432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1366.1.1prot_P-littoralis_Contig1366.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1366 2280..2432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1366.1.1

>prot_P-littoralis_Contig1366.1.1 ID=prot_P-littoralis_Contig1366.1.1|Name=mRNA_P-littoralis_Contig1366.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=47bp
MIGVCYRAADCWMIRTCYFRVHKKEVVCIFIVLGINLERYFSPPVE*
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mRNA from alignment at P-littoralis_Contig1366:2225..2509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1366.1.1 ID=mRNA_P-littoralis_Contig1366.1.1|Name=mRNA_P-littoralis_Contig1366.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig1366:2225..2509- (Pylaiella littoralis U1_48)
GTGAATGCAAACTCAGGGGTCACGGGCAGCTGGGATGGGGCAAGTTCGGC
AGAGAGGCTGTGGTTGTGGAAGAAGGCATGATTGGTGTGTGTGCTTTAAC
TGAGTACAGAGCAGCTGACTGCTGGATGATACGTACGTGCTATTTTCGAG
TGCATAAAAAAGAGGTCGTTTGCATTTTCATCGTGCTAGGTATAAACCTC
GAGCGATACTTCTCTCCGCCGGTTGAATGAACCCACTCCCAACCCAACCT
CCTGCGGACGGAGAGCAGTCTACAGAGGAGACAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1366:2225..2509-

>mRNA_P-littoralis_Contig1366.1.1 ID=mRNA_P-littoralis_Contig1366.1.1|Name=mRNA_P-littoralis_Contig1366.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=141bp|location=Sequence derived from alignment at P-littoralis_Contig1366:2225..2509- (Pylaiella littoralis U1_48)
ATGATTGGTGTGTGTTACAGAGCAGCTGACTGCTGGATGATACGTACGTG
CTATTTTCGAGTGCATAAAAAAGAGGTCGTTTGCATTTTCATCGTGCTAG
GTATAAACCTCGAGCGATACTTCTCTCCGCCGGTTGAATGA
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