mRNA_P-littoralis_Contig1365.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.850e-46 Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDG 464
GVVVFIFPNDAAQIAI +LL FF ++FE+L PY+SESDMW+ RGGHVIVFLSMF LLL KVDVS E +SQA++ GVLV+ HVL++L I+VEV C A +KRV SSPES+P LR R S ES P+ W S +RQ+SVS + GP R + G
Sbjct: 1196 GVVVFIFPNDAAQIAITMLLTLFFSSLFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSCESDQSQAVFSGVLVAGHVLMILVIIVEVVGMCYASGKKRVVGAASSPESSPGLRPRAGSDDVPAFESVPASWPSFMRQSSVSEEPGPTRRIAG 1354
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.370e-45 Identity = 97/162 (59.88%), Postives = 114/162 (70.37%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESGESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVGRP 488
G VVFIFPN A+QIAI +L+AFFF A+F++L PY S SD W+ RGGHVIVFLSMF LL KVDVSG+R +SQA + GVLV+ HVL++LAIVVEVA C A RRKRV E + E V + ES P+ W+S LR SVS KTG RSV GTV G P
Sbjct: 818 GGVVFIFPNTASQIAITMLIAFFFFAVFDVLSPYTSASDTWLSRGGHVIVFLSMFDFLLLKVDVSGDRDQSQAAFAGVLVAGHVLMILAIVVEVAALCYASRRKRVAEGEEASERPRVGSDDVPALESAPAPWRSFLRLRSVSEKTGSTRSVSGTVVTTGGP 979
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5K0D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.080e-43 Identity = 94/166 (56.63%), Postives = 110/166 (66.27%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVGR 485
GVVVFIFPNDAAQIAI +L+A FL +FEML PY SE DM + RG HVIV LSMF LLL KVDVSGE +SQ + VLV+ HVL++LAI+VEV C A KRV +S E+ P L R S ES P+ W +R+ SVS + GP R V GTV AVGR
Sbjct: 130 GVVVFIFPNDAAQIAITMLIALSFLIVFEMLSPYTSEPDMCLSRGDHVIVPLSMFDLLLLKVDVSGESEQSQTAFAAVLVAGHVLMILAIIVEVVGVCCASGTKRVVGAAASTENVPGLTPRAGSDDVLAFESAPASWPPSMRERSVSEEPGPTRRVAGTVIAVGR 295
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 167 bits (422), Expect = 5.200e-43 Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTR--VESGESFPSLW-KSLLRQTSVSAKTGPNRSVDGTVPAVGRP 488
GVVVFIFPNDAAQIAI +L AF F AIFEM+ PY+S+SDMW+ RGGHVIVF SMF LLL KVDVS ER ESQA++ GVLV+ HVL++LAIVVEV C R +RV + + P+ + V ES P+ W S RQ SVS K GPNR V G V V RP
Sbjct: 923 GVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 1087
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.940e-42 Identity = 94/162 (58.02%), Postives = 113/162 (69.75%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVP 473
GVVVFIFPNDAAQIAI +L+ FF +FE+L PY+SESDMW+ RGGHVIVFLSMF LLL KVDVSGE + SQAI+ V V+ HVL++L IVVEV C A +KRV SS ES+P LR R S ES P+ W S +RQ SVS + G ++ +G P
Sbjct: 1521 GVVVFIFPNDAAQIAITMLITSFFSLLFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSGESNHSQAIFSRVFVAGHVLMILVIVVEVVGICYASGKKRVVGAASSSESSPGLRPRAGSDDVPALESVPASWASFMRQGSVSEEQGGPQAQEGRRP 1682
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE) HSP 1 Score: 165 bits (417), Expect = 2.430e-42 Identity = 97/166 (58.43%), Postives = 113/166 (68.07%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKR-VEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVG 482
GVV FIFPNDAAQIAI +L+AFFF +FE++ PY SESD W+ RGGHVIVFLSMF LL KVDVS E +SQ ++ GV V+ HVLL+LAIVVEV C A +KR VEE V S E P LR R S ES P+ WK+ + Q SVS K GP RS G V +G
Sbjct: 936 GVVAFIFPNDAAQIAITMLVAFFFSLVFEVMSPYTSESDTWLSRGGHVIVFLSMFDALLLKVDVSSESEQSQDVFAGVFVAGHVLLILAIVVEVVGICLASGKKRGVEEAVPS-EGLPVLRPRGGSDDVPVFESAPASWKTFVGQASVSEKPGPRRSASGAVVTMG 1100
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 6.580e-36 Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTR 368
GVVVFIFPNDAAQIAI +L+ +F +FE+L PY SESDMW+ RGGHVIVFLS+F L+L KVDVSGE +SQA++ GVL++ HVL++L IVVEV C A KRV SS ES+P LR R
Sbjct: 610 GVVVFIFPNDAAQIAITMLITSYFSLLFEILSPYGSESDMWLSRGGHVIVFLSIFDLVLLKVDVSGESDQSQAVFSGVLLAGHVLMILVIVVEVVGICYASGMKRVVGAASSSESSPGLRPR 731
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI) HSP 1 Score: 144 bits (362), Expect = 5.120e-35 Identity = 80/127 (62.99%), Postives = 91/127 (71.65%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESGE 383
GVVVFI+PNDAAQIAI IL+A FF A+F++L PY SE DMW+ RGG V+VFLSMF LLL KVDVS ERS+SQ Y GVLV+ HVL+ LAI EV C A RR RV E + S P LR R S E
Sbjct: 917 GVVVFIYPNDAAQIAITILIAVFFFAVFDILSPYTSEFDMWLSRGGQVVVFLSMFDLLLLKVDVSHERSQSQQAYAGVLVAGHVLMFLAISAEVVGICYASRRNRVMEEDKAFLSFPGLRARATSNE 1043
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE) HSP 1 Score: 135 bits (340), Expect = 4.430e-32 Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRA 302
GVVVFI+PN AAQ+A+ IL+AFFFL ++EML PY+S+SDMW+ RGGHVIVFLSMF +LL KVDVS ER+ESQ ++ GV+V+ H L+ LA++VE C A
Sbjct: 1035 GVVVFIYPNTAAQVAVTILIAFFFLMVYEMLAPYRSDSDMWLSRGGHVIVFLSMFDVLLLKVDVSDERTESQRVFAGVIVAGHCLMFLAVIVEAVGVCYA 1134
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.090e-30 Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 3
Query: 3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAP 353
GVV+F+FP+DAA AI +L+AF FL +FE+L PY+SESD+W+ RGGHVIVFLS F LLL KVDVSGE +SQ ++ GVLV+ H+L +LAI EV A +KRV SPE +P
Sbjct: 648 GVVIFVFPDDAAHFAITMLIAFSFLIVFEILSPYESESDIWLSRGGHVIVFLSTFDLLLLKVDVSGESDQSQTMFAGVLVAGHMLPILAIFAEVVGIWYASGKKRVVRAGVSPEISP 764 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1365.2.1 >prot_P-littoralis_Contig1365.2.1 ID=prot_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp MLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLback to top mRNA from alignment at P-littoralis_Contig1365:12087..12956- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1365.2.1 ID=mRNA_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig1365:12087..12956- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1365:12087..12956- >mRNA_P-littoralis_Contig1365.2.1 ID=mRNA_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1365:12087..12956- (Pylaiella littoralis U1_48)back to top |