mRNA_P-littoralis_Contig1365.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1365.2.1
Unique NamemRNA_P-littoralis_Contig1365.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.850e-46
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDG 464
            GVVVFIFPNDAAQIAI +LL  FF ++FE+L PY+SESDMW+ RGGHVIVFLSMF LLL KVDVS E  +SQA++ GVLV+ HVL++L I+VEV   C A  +KRV    SSPES+P LR R  S      ES P+ W S +RQ+SVS + GP R + G
Sbjct: 1196 GVVVFIFPNDAAQIAITMLLTLFFSSLFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSCESDQSQAVFSGVLVAGHVLMILVIIVEVVGMCYASGKKRVVGAASSPESSPGLRPRAGSDDVPAFESVPASWPSFMRQSSVSEEPGPTRRIAG 1354          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.370e-45
Identity = 97/162 (59.88%), Postives = 114/162 (70.37%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESGESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVGRP 488
            G VVFIFPN A+QIAI +L+AFFF A+F++L PY S SD W+ RGGHVIVFLSMF  LL KVDVSG+R +SQA + GVLV+ HVL++LAIVVEVA  C A RRKRV E   + E        V + ES P+ W+S LR  SVS KTG  RSV GTV   G P
Sbjct:  818 GGVVFIFPNTASQIAITMLIAFFFFAVFDVLSPYTSASDTWLSRGGHVIVFLSMFDFLLLKVDVSGDRDQSQAAFAGVLVAGHVLMILAIVVEVAALCYASRRKRVAEGEEASERPRVGSDDVPALESAPAPWRSFLRLRSVSEKTGSTRSVSGTVVTTGGP 979          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5K0D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.080e-43
Identity = 94/166 (56.63%), Postives = 110/166 (66.27%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVGR 485
            GVVVFIFPNDAAQIAI +L+A  FL +FEML PY SE DM + RG HVIV LSMF LLL KVDVSGE  +SQ  +  VLV+ HVL++LAI+VEV   C A   KRV    +S E+ P L  R  S      ES P+ W   +R+ SVS + GP R V GTV AVGR
Sbjct:  130 GVVVFIFPNDAAQIAITMLIALSFLIVFEMLSPYTSEPDMCLSRGDHVIVPLSMFDLLLLKVDVSGESEQSQTAFAAVLVAGHVLMILAIIVEVVGVCCASGTKRVVGAAASTENVPGLTPRAGSDDVLAFESAPASWPPSMRERSVSEEPGPTRRVAGTVIAVGR 295          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.200e-43
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTR--VESGESFPSLW-KSLLRQTSVSAKTGPNRSVDGTVPAVGRP 488
            GVVVFIFPNDAAQIAI +L AF F AIFEM+ PY+S+SDMW+ RGGHVIVF SMF LLL KVDVS ER ESQA++ GVLV+ HVL++LAIVVEV   C   R +RV +  +     P+  +   V   ES P+ W  S  RQ SVS K GPNR V G V  V RP
Sbjct:  923 GVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 1087          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.940e-42
Identity = 94/162 (58.02%), Postives = 113/162 (69.75%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVP 473
            GVVVFIFPNDAAQIAI +L+  FF  +FE+L PY+SESDMW+ RGGHVIVFLSMF LLL KVDVSGE + SQAI+  V V+ HVL++L IVVEV   C A  +KRV    SS ES+P LR R  S      ES P+ W S +RQ SVS + G  ++ +G  P
Sbjct: 1521 GVVVFIFPNDAAQIAITMLITSFFSLLFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSGESNHSQAIFSRVFVAGHVLMILVIVVEVVGICYASGKKRVVGAASSSESSPGLRPRAGSDDVPALESVPASWASFMRQGSVSEEQGGPQAQEGRRP 1682          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.430e-42
Identity = 97/166 (58.43%), Postives = 113/166 (68.07%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKR-VEEVVSSPESAPQLRTRVESG-----ESFPSLWKSLLRQTSVSAKTGPNRSVDGTVPAVG 482
            GVV FIFPNDAAQIAI +L+AFFF  +FE++ PY SESD W+ RGGHVIVFLSMF  LL KVDVS E  +SQ ++ GV V+ HVLL+LAIVVEV   C A  +KR VEE V S E  P LR R  S      ES P+ WK+ + Q SVS K GP RS  G V  +G
Sbjct:  936 GVVAFIFPNDAAQIAITMLVAFFFSLVFEVMSPYTSESDTWLSRGGHVIVFLSMFDALLLKVDVSSESEQSQDVFAGVFVAGHVLLILAIVVEVVGICLASGKKRGVEEAVPS-EGLPVLRPRGGSDDVPVFESAPASWKTFVGQASVSEKPGPRRSASGAVVTMG 1100          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 6.580e-36
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTR 368
            GVVVFIFPNDAAQIAI +L+  +F  +FE+L PY SESDMW+ RGGHVIVFLS+F L+L KVDVSGE  +SQA++ GVL++ HVL++L IVVEV   C A   KRV    SS ES+P LR R
Sbjct:  610 GVVVFIFPNDAAQIAITMLITSYFSLLFEILSPYGSESDMWLSRGGHVIVFLSIFDLVLLKVDVSGESDQSQAVFSGVLLAGHVLMILVIVVEVVGICYASGMKRVVGAASSSESSPGLRPR 731          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.120e-35
Identity = 80/127 (62.99%), Postives = 91/127 (71.65%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESGE 383
            GVVVFI+PNDAAQIAI IL+A FF A+F++L PY SE DMW+ RGG V+VFLSMF LLL KVDVS ERS+SQ  Y GVLV+ HVL+ LAI  EV   C A RR RV E   +  S P LR R  S E
Sbjct:  917 GVVVFIYPNDAAQIAITILIAVFFFAVFDILSPYTSEFDMWLSRGGQVVVFLSMFDLLLLKVDVSHERSQSQQAYAGVLVAGHVLMFLAISAEVVGICYASRRNRVMEEDKAFLSFPGLRARATSNE 1043          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.430e-32
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRA 302
            GVVVFI+PN AAQ+A+ IL+AFFFL ++EML PY+S+SDMW+ RGGHVIVFLSMF +LL KVDVS ER+ESQ ++ GV+V+ H L+ LA++VE    C A
Sbjct: 1035 GVVVFIYPNTAAQVAVTILIAFFFLMVYEMLAPYRSDSDMWLSRGGHVIVFLSMFDVLLLKVDVSDERTESQRVFAGVIVAGHCLMFLAVIVEAVGVCYA 1134          
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.090e-30
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 3
Query:    3 GVVVFIFPNDAAQIAIAILLAFFFLAIFEMLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVLVSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAP 353
            GVV+F+FP+DAA  AI +L+AF FL +FE+L PY+SESD+W+ RGGHVIVFLS F LLL KVDVSGE  +SQ ++ GVLV+ H+L +LAI  EV     A  +KRV     SPE +P
Sbjct:  648 GVVIFVFPDDAAHFAITMLIAFSFLIVFEILSPYESESDIWLSRGGHVIVFLSTFDLLLLKVDVSGESDQSQTMFAGVLVAGHMLPILAIFAEVVGIWYASGKKRVVRAGVSPEISP 764          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1365.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1E0_ECTSI1.850e-4660.38EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5L4F7_9PHAE1.370e-4559.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0D5_9PHAE2.080e-4356.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX12_9PHAE5.200e-4359.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI1.940e-4258.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7J9_9PHAE2.430e-4258.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAD4_9PHAE6.580e-3663.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI5.120e-3562.99Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5JWT9_9PHAE4.430e-3264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL43_9PHAE1.090e-3058.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1365contigP-littoralis_Contig1365:12087..12956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHQ8
PFAMsBeta_helix,Chlam_PMP
Model size855
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue2.27e-15
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.2499611-UTR-P-littoralis_Contig1365:12086..124501680789631.2499611-UTR-P-littoralis_Contig1365:12086..12450Pylaiella littoralis U1_48UTRP-littoralis_Contig1365 12087..12450 -
1680789631.2867815-UTR-P-littoralis_Contig1365:12867..129561680789631.2867815-UTR-P-littoralis_Contig1365:12867..12956Pylaiella littoralis U1_48UTRP-littoralis_Contig1365 12868..12956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.2662933-CDS-P-littoralis_Contig1365:12450..125581680789631.2662933-CDS-P-littoralis_Contig1365:12450..12558Pylaiella littoralis U1_48CDSP-littoralis_Contig1365 12451..12558 -
1680789631.2759635-CDS-P-littoralis_Contig1365:12573..128671680789631.2759635-CDS-P-littoralis_Contig1365:12573..12867Pylaiella littoralis U1_48CDSP-littoralis_Contig1365 12574..12867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1365.2.1prot_P-littoralis_Contig1365.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1365 12451..12867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1365.2.1

>prot_P-littoralis_Contig1365.2.1 ID=prot_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MLRPYQSESDMWMCRGGHVIVFLSMFYLLLAKVDVSGERSESQAIYGGVL
VSAHVLLMLAIVVEVAITCRAFRRKRVEEVVSSPESAPQLRTRVESGESF
PSLWKSLLRQTSVSAKTGPNRSVDGTVPAVGRP*
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mRNA from alignment at P-littoralis_Contig1365:12087..12956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1365.2.1 ID=mRNA_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig1365:12087..12956- (Pylaiella littoralis U1_48)
CGGGTGTAGTAGTCTTCATTTTCCCCAATGATGCGGCCCAAATTGCGATT GCCATACTGTTGGCCTTTTTCTTCCTCGCAATTTTCGAAATGCTGCGCCC GTACCAGTCTGAATCTGACATGTGGATGTGTCGTGGTGGGCACGTTATCG TGTTCCTTAGCATGTTCTACTTGTTGCTGGCGAAGGTGGATGTGTCCGGC GAGAGGAGCGAGAGTCAGGCCATATATGGCGGAGTTTTGGTGTCAGCTCA CGTATTGTTGATGCTTGCCATTGTTGTCGAGGTGGCCATCACTTGCCGTG CGTTCAGGAGGAAGCGAGTTGAGGAGGTGGTGTCGTCACCAGAGAGTGCA CCACAGCTGAGGACGCGCGTTGAATCGGGTGAAGCACCTGCGTTTGAGAG TTTTCCTTCACTGTGGAAGTCGCTTTTGAGGCAAACTTCAGTGTCAGCAA AGACGGGACCGAACCGTAGCGTCGATGGGACTGTGCCTGCGGTGGGCAGA CCGTAAGTGTTTGTTGTTCTACAGTAGTAGTACATGTATTCTTATCTGCA GTTGCGGTTTGATTCTTATTTGGTCGCGGTGGTTTACTTGTACTAAATAC TGTAGTCTTTTACGAAATATTTATTTATGGTTTGTGCGAGTTTGTGTACG GTTGTTGGAAGTGTCGGCAATTGGCGGTGGTAGGGGTTGCGGCTCGCAGA AGTAAAGGTCAAGATGGGCCCAACACTCGTGTCTTGTTGTGCTTCCACAC TCACGCCTAGGATTTTAGAGTAGTAGCAGACCATGTTGTCGAACAATTTT TCCCTCGACGACTTGGGTCTCTATTTTACATCATGCAGGAACCACTTTTC TTAGCCGTGATCGCAAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1365:12087..12956-

>mRNA_P-littoralis_Contig1365.2.1 ID=mRNA_P-littoralis_Contig1365.2.1|Name=mRNA_P-littoralis_Contig1365.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1365:12087..12956- (Pylaiella littoralis U1_48)
ATGCTGCGCCCGTACCAGTCTGAATCTGACATGTGGATGTGTCGTGGTGG
GCACGTTATCGTGTTCCTTAGCATGTTCTACTTGTTGCTGGCGAAGGTGG
ATGTGTCCGGCGAGAGGAGCGAGAGTCAGGCCATATATGGCGGAGTTTTG
GTGTCAGCTCACGTATTGTTGATGCTTGCCATTGTTGTCGAGGTGGCCAT
CACTTGCCGTGCGTTCAGGAGGAAGCGAGTTGAGGAGGTGGTGTCGTCAC
CAGAGAGTGCACCACAGCTGAGGACGCGCGTTGAATCGGGTGAAAGTTTT
CCTTCACTGTGGAAGTCGCTTTTGAGGCAAACTTCAGTGTCAGCAAAGAC
GGGACCGAACCGTAGCGTCGATGGGACTGTGCCTGCGGTGGGCAGACCGT
AA
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