mRNA_P-littoralis_Contig136.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.87.1
Unique NamemRNA_P-littoralis_Contig136.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig136.87.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.070e-10
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   13 VDAAYRAWNLLLNSVVDVAMMVRITAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDL 189
            V+    +WNLL+ SV  + ++ +I A+GSPSGGW  F NYY P+A AEKER   +++ L
Sbjct:   71 VEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGL 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE1.070e-1047.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:467945..468148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size205
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789630.675045-CDS-P-littoralis_Contig136:467944..4681481680789630.675045-CDS-P-littoralis_Contig136:467944..468148Pylaiella littoralis U1_48CDSP-littoralis_Contig136 467945..468148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.87.1prot_P-littoralis_Contig136.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 467945..468148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.87.1

>prot_P-littoralis_Contig136.87.1 ID=prot_P-littoralis_Contig136.87.1|Name=mRNA_P-littoralis_Contig136.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
HRREVDAAYRAWNLLLNSVVDVAMMVRITAEGSPSGGWSAFKNYYTPQAD
AEKERARQEWYDLRQGLN
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mRNA from alignment at P-littoralis_Contig136:467945..468148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.87.1 ID=mRNA_P-littoralis_Contig136.87.1|Name=mRNA_P-littoralis_Contig136.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig136:467945..468148+ (Pylaiella littoralis U1_48)
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTCAGGATAACGGCGGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCTTTCAAGAATTACTACACTCCGCAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig136:467945..468148+

>mRNA_P-littoralis_Contig136.87.1 ID=mRNA_P-littoralis_Contig136.87.1|Name=mRNA_P-littoralis_Contig136.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig136:467945..468148+ (Pylaiella littoralis U1_48)
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTCAGGATAACGGCGGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCTTTCAAGAATTACTACACTCCGCAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAAC
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