mRNA_P-littoralis_Contig136.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.40.1
Unique NamemRNA_P-littoralis_Contig136.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 8.730e-182
Identity = 304/506 (60.08%), Postives = 366/506 (72.33%), Query Frame = 2 
Query:  272 RLGSSSYNNTVAADPPPTDAAWGLAFKINVAITLVSALYFGGSWLHALNSGVFFMGDGRRHLSTSGEHGGGAFGPAFFFVGVVSIGWAFAWGVLSAVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIASARTMTGPDGTVYPSSICGNVSLTD-----TGSLSCQCGGKTILYSSTCQFEGNTVWLACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPG-GVSPVRGALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRACRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWCPGMAV 1771
            RL +SS     AA+PP TD AW +AFK NVAIT+VSA  FG + L     G     +  R LST G  GGG  GPA    G+V + WAFAWGVL AVIN+S+ IL++AYL +AGISGMAAVSAL   HW     PA LC W+VRF+ KRQ +IRF SANLKVA +AVKSMPWT R  LLMSGVQVLWVL+ A+AAGG+IAS RT+TG DGT Y +S C +V L          LSC CGG    Y+S C++EG  +WLA FWLASL WGA VIR VVTATV GSVASWW+S     SPVRGALYRATHGSFGS+CKAAA++TAVR+  R +RRL +  R  +F+L WLQ   DY+LAY+ICFISIYGLSFSEAG+RVSELFR+RGVTT+AND++VD GL A+  G TVC++ +A     +V+ ++  + GG FLV   V  +  S LLV  +V TTVEVLRS+FKAVF+CFVQDP+ALA+NH RQ++++LS AW EMQA CP   V
Sbjct:   21 RLLNSSNXXXXAAEPPATDRAWAVAFKANVAITVVSAFSFGSAGLDEFVGGD----ESGRRLSTGG--GGGVVGPALVVFGIVGLAWAFAWGVLHAVINYSERILKIAYLSLAGISGMAAVSALAAGHWFGCLFPAFLCAWTVRFYLKRQSRIRFGSANLKVAGLAVKSMPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLRTVTGLDGTTYKASSCSDVMLDPPTRGMVHHLSCMCGGHVASYNSACEYEGRGLWLALFWLASLTWGADVIRNVVTATVTGSVASWWYSADRDASPVRGALYRATHGSFGSLCKAAAISTAVRLLTRTVRRLAKVGRCGSFVLGWLQRLADYILAYSICFISIYGLSFSEAGQRVSELFRRRGVTTIANDIVVDVGLTAVCAGLTVCFLCLA----YLVITVAHRALGGTFLVGVYVIFLF-SPLLVAFVVATTVEVLRSSFKAVFVCFVQDPDALASNHGRQLHDDLSRAWGEMQAECPKWTV 515
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.620e-106
Identity = 225/498 (45.18%), Postives = 300/498 (60.24%), Query Frame = 2 
Query:  320 PTDAAWGLAFKINVAITLVSALYFGGSWLHALNSGVFFMGDGRRHLSTSGEHGGGAF-GPAFFFVGVVSIGWAFAWGVLSAVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIAS-ARTMTGPDGTVYPSSICGNVSL---------TDTGS-LSCQCGGKTILYSSTCQFEGNTV-W-LACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRA-CRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWCPGMA 1768
            P D AW +AF +NV IT++SA++F      A+N+          H   SG+   G+   P    V ++++GW  A   L ++ +  K +LQ AY+G AG+ G+AA +AL     +   + A++C      F K Q ++RF +ANLKVAA+AV+SMP T R AL MS VQV+W ++ A AAGGS A+ +  + G DGT Y S  C ++++         T  GS LSC CGG+ I   S C+F G    W LA FWL S+ W  AV+R VVTATVAGSVASWWFSPG  S VRGA YRATH SFGS+CKAAA+   +R+    +R ++ A C  C   L   + A+ Y  AY ICFI IYGL FSEA RRV ELF++RG+T +AND IV  GL  L +G    Y+ V  +    +V L+G    G         +VV  ++ V V   TT+ VLRS  KAVF+CFVQDPEA A NH  Q+Y++LS AW+++Q  CPG+A
Sbjct:  145 PMDRAWAIAFWVNVCITVLSAIFFKAEGAKAVNA---------HHRRLSGDSAAGSLLAPLLMVVAMIAVGWGVACMALYSLASCPKRMLQAAYVGFAGVWGVAAAAALWNGITVIAVVCALVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDITVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHALCLRC--FLRRFRDAVGYASAYAICFIGIYGLGFSEALRRVHELFQRRGITMIANDGIVSVGLFLLTMGLMSTYLVVVCSS---MVMLTGVQFSGSLDGLIMFVVVVFVFVPVAVCFSTTMSVLRSGHKAVFVCFVQDPEAFANNHS-QMYDDLSGAWQQIQTECPGVA 627
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 3.240e-88
Identity = 196/433 (45.27%), Postives = 254/433 (58.66%), Query Frame = 2 
Query:  515 VVSIGWAFAWGVLSAVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIASARTMT-GPDGTVYPSSICGNVSL---------TDTGS-LSCQCGGKTILYSSTCQFE-GNTVW-LACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRACRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASAL--GQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWCPGMA 1768
            ++++GW  A   L ++ ++ K +LQ AY+G AG+ G+AA +AL     +   + A++C      F K Q ++RF +ANLKVAA+AV+SMP T R AL MS VQV+W ++ A AA GS A+   M  G DGT Y S  C ++++         T  GS LSC CGG+ I   S C+F  G   W LA FWL S+ W  AV+R VVTATVAGSVASWWFSPG    VRGA YRATH SFG              F R  R                  A+ Y  AY ICFI IYGL FS+A RR  ELF++RG+T +AND IV AGL  L +G    YV V  ++    +V+ +    SG  F    +V +VV  ++ V V   TT+ VLRS  KAVF+CFVQDPEALA NH  Q Y++LS AW+++Q  CPG+A
Sbjct:    5 MIAVGWGVACMALYSLASYPKRMLQAAYVGFAGVWGVAAAAALWNGITVIAVVCALVCAIVAWVFWKNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTRSVRGAFYRATHSSFGC-------------FLRRFRD-----------------AVGYASAYAICFIGIYGLDFSKALRRAHELFQRRGITMIANDGIVSAGLFLLTMGLMSTYVVVVWSMVWSSMVMSMGAQFSGSLFFFIMSV-VVVFFFVPVAVCFSTTMSVLRSGRKAVFVCFVQDPEALANNHGSQTYDDLSGAWQQIQTECPGVA 406
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 4.720e-82
Identity = 204/556 (36.69%), Postives = 287/556 (51.62%), Query Frame = 2 
Query:  251 DFAYVSNRLGSSSYNNTVAADPPPTDAAWGLAFKINVAITLVSALYFGGSWLHALNSGVFFMGDGRRHLST-----------------SGEHG-GGAFGPAFFFVGVVSIGWA--FAWGVLSAVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIASARTMTGPDGTVYPSSICGNVSLTDTGS------------LSCQCGGKTILYSSTCQFEGNTVWLACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVS-PVRGALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRACRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALG-QVVVKLSG-------------SSSGGGFLVQET-----VAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWCPG 1762
            DFA  + + G   + +  +A        W  AFK+NV +T+++A +FG   L AL +     G GRR L                    GE G GGA        GV  +G A   + G+L ++    +  L  +Y    GI G AA    +     A  + +++ V+ +    +R+ +  F SANLKVA++A++ MPWT+R+A+LM  VQ LW +V A+AA GS  +  T+  PDG+ + +  C  +   D G              SC C G T +    C+F G  + L   WL S+ WG  VIR VV  TV+GSVASWWF+P   S PV+GA +RAT  SFGS+CKAAA+   +    +  +R+ R       LL WL  A  YVLAYT+ FI IYGLSF+EAG RV E+F++R VTT+AND++V+ GL  L L ATV Y  V   +     +++ G             S  G G +V        V   +   + +  +V T +EV+RS FKAVF+CFVQDPE LA  H  +++ EL  AW+ M     G
Sbjct:   27 DFAEHTVQAGDDEHKSRYSAH-----RGWACAFKVNVLVTVLAAFWFGFEGLEALANDSL-SGQGRRRLMHXXXXXXXXXXXXXXXXGEGEEGHGGAHLSNVIVGGVALLGIASLVSAGMLHSLFRCGRGFLAASYAVFVGIIGAAAGVMFLVGAVPAAVVFSVVFVFGLVALRRRKHRFAFGSANLKVASMAIRDMPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAAPDGSSHRAIYC--LDFADGGDGGGGGEDVFAAQNSCVCNG-TKISDGECEFSGLGLPLMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWLNKAASYVLAYTVAFIGIYGLSFNEAGGRVREMFQRRAVTTLANDIVVEVGLRLLALSATVVYALVTGVMTFGAFMRVGGPAIFDDEEAAAGDSKDGDGSVVDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAWQHMHGTPQG 573
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.540e-43
Identity = 122/321 (38.01%), Postives = 175/321 (54.52%), Query Frame = 2 
Query:  509 VGVVSIGWAFAWGVLSAVINFSKEILQVAYLGVAGISGMAAV----SALVTRHWLAWTIPAILCVWS----VRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGS-IASARTMTGPDGTVYPSSICGNVSLTD---------TGS-LSCQCGGKTILYSSTCQFEGNTV--W-LACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAAALTTAVR--IFARAMR----------RLTRACRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSE 1369
            V ++++GW      L++  NF K ++Q  ++GVAG+SG+AA     SAL+ +  + W +            + F+   Q  +RF +A+L VAA+AV+SMP T   AL M  ++V+W ++ A++A GS +A +  +   DGT Y    C ++ ++          TGS LSC CGG+ I   S C+F G     W L  FW+ S  WG  V+  VV ATVAGSVASWWFSPG  + VRGA YRATH SFGS+CKA     A    + +R++R           +  +  + +F      V   Y+  Y ICFI +YGL FSE
Sbjct:    3 VAMIAVGWGVLRMALNSFANFPKRMVQATFMGVAGVSGVAAAAPLWSALLKKALITWVVXXXXXXXXXXXCIMFW--HQIHLRFGAADLNVAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPGDTNSVRGAFYRATHSSFGSLCKACPTQMADTWGVISRSVRISNSTGPNSAHVFSSRNWMSFSRNLGAVCHAYI--YAICFIGMYGLDFSE 319
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: A0A6H5K950_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K950_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.120e-27
Identity = 77/179 (43.02%), Postives = 100/179 (55.87%), Query Frame = 2 
Query: 1295 LQVALDYVLAYTICFISIYGLSFSEAG---------------------RRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWCPGMA 1768
            L+ A+ Y   Y ICFI IYGL FSE                       RRV ELF++RG+T +AND IV  GL  L +G    Y+ VA +    +V L+G    G +       ++V  ++ V V   TT+ VLRS   AVF+CFVQDPEALA NH  Q Y++LS AW++MQA CPG+A
Sbjct:    4 LRPAVGYASTYAICFIGIYGLDFSEGAGAHPISRTTGSFAYQPMGSALRRVHELFQRRGITMIANDDIVAVGLFLLTMGLMSTYLVVACSS---LVMLTGVQFSGSWDGLIMFVVLVFVFVPVAVCFSTTMSVLRSGHNAVFVCFVQDPEALANNHGSQRYDDLSEAWQQMQAECPGVA 179
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: A0A067CHQ4_SAPPC (Choline transporter-like protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHQ4_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 1.100e-26
Identity = 119/425 (28.00%), Postives = 190/425 (44.71%), Query Frame = 2 
Query:  551 LSAVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSI-------ASARTMTGPDGTVYPSSICGNVSLTDTGSLSCQCGGKTILYSSTCQFEG--NTVWLACFW-LASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAA---ALTTAVRIFARAMRRL--TRACRYCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVD---------AGLAALVLGATVCYVAVASAL---GQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREM 1744
            LS ++ F+  ++  +     G++ +  + A++ + +    + AI  + S+ +    + +I F++ANL+ AA A+K    T+  A  M  +Q++WV V A AA G         A++ T   PDG     S C         S+S +C       +  C+  G  +  ++A F+ L S  WG   I+ V  ATVAG+VA+WW+S         +L R    SFGSIC  +   A+  A+R  A   RR     AC     +L  LQ  ++Y   +   ++ IYG  F++AG+ V  LFR RG  T+ ND ++           G     LG    Y+  A+      Q+++ + G   G G  +                       V+ SA   +F+CF +DP AL T+H    +NEL   W  M
Sbjct:  118 LSFMVRFASGMITFSLWFGVGLNVLFTIYAVIKKQYALAILGAIFVLLSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDATSSTRGKPDG-----STC---------SISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSAGATGASLKRTLTTSFGSICLGSLIVAILQALRQLAEEARRSGDAAAC-IAECILGCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLGLVYTYIDTANTTFNNSQIIIPVMGLIFGIGISI-------------------IPFSVIDSAVATIFVCFAEDPAALQTSHPEH-FNELMTEWHRM 507
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: K3W6P8_GLOUD (Choline transporter-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6P8_GLOUD)

HSP 1 Score: 124 bits (312), Expect = 5.150e-26
Identity = 114/426 (26.76%), Postives = 198/426 (46.48%), Query Frame = 2 
Query:  524 IGWAFAWGVLSAVINFSKEILQVAYLGV---------AGISGMAAVSALVTRHWLAWTIPAILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIASARTMTGPDGTVYPSSICGNVSLTDTGSLSCQCGGKTILYSSTCQFEGNT-VWLACFWL-ASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRACR--------YCNFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREM 1744
            IG A    V+S VI  +   L  AY             GIS   A       +     + AI+ + ++ +    Q +I F+ ANL+VA  A+     T+  +L+ + VQ+ WV+V ++A  G   + +T     GT+   S C   S  ++ +     G +  + S +  F+G+   ++A F+L  S  WG  V + V   TVAG+VA++W+S         +L RAT  SFGSIC  + L   ++    A+R +  + R         C  +L  LQ  ++Y   +   ++ IYG  F++AG+ V +LF +RG   + ND ++   L+   LG  +    V   LG+    ++  +S        T+ + V+ +++   +  T + V+ S+   VF+C  +DP A   +H  ++Y+ L   W  +
Sbjct:  105 IGIALGMSVVSVVIALALVKLITAYARCMINFVLWFNVGISFAVAAYGFAIGNLFLGILGAIIALLNLCYARLVQHRIPFAVANLRVAEAAISKHKTTYCISLVFTVVQIAWVVVWSLALLGVANNMKTDESTSGTLVNGSRCSVDSQCESNACQYYNGTRQCVSSMSKVFKGSAETYVAYFFLLVSFYWGLQVFKNVAHTTVAGTVATFWYSSESAGATGASLKRATTTSFGSICFGSLLVAILQ----ALRAIAESSREDGSFVGCICECILGCLQSLMEYFNRWAFVYVGIYGYKFTQAGKAVFQLFNQRGWDAIINDDLIGNVLSFAALGVGLICAGVGGILGEATDVVTFENS--------TIFLAVLGFIVGVGVAITPLAVIDSSVATVFVCLAEDPAAFMQSHP-ELYHPLITEWHNL 517
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: W4G5R8_9STRA (Choline transporter-like protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4G5R8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.000e-24
Identity = 113/368 (30.71%), Postives = 171/368 (46.47%), Query Frame = 2 
Query:  695 SVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIASARTMTGPDGTVYPSSICGNVSLTDTGSLSCQCGGKTILYSSTCQFEGNTVWLACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAA---ALTTAVRIFARAMRRLTR-------ACRYC--NFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTVIVGTTVEVLRS-----AFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQ 1747
            ++ + +  Q +I F+SA+LK+A VA+ +    F  ALL   VQV W++  +++A G              VY      + S     S    CGG            G  V +  F L S+ WG  VI+ V+T TVAG+VA+WW++    S V G+LYR+   SFGSIC  +   A+  A+R   R ++           AC  C    +L  ++  ++Y   +   ++ IYG  F  AG+ V +LF  RG T V ND   D    AL +GA    V +   +G VV K +      GF   +T   V+   L    I G ++ ++ +     A   +F+CF +DP +   +H    YNEL + WR  Q
Sbjct:  156 NICYINAVQNRIAFASAHLKLACVALSNHKSIFALALLFIFVQVAWLVTWSLSAVG--------------VYQLFRSADPSCEQEESRGELCGGA-----------GFNVTIF-FLLVSVYWGQQVIQNVMTCTVAGTVATWWYNARTESAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDNVGLACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRSAGKAVMQLFDSRGWTAVIND---DLSSTALSIGAFGVGV-LTGVIGLVVAKFAPVDWTVGFGADDTTRYVIFGGL--GFIAGFSMAMILANLVITALHTIFVCFAEDPVSFQRSHPEH-YNELILTWRHFQ 490
[Close]
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Match: F0W963_9STRA (Choline transporter-like protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W963_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.480e-24
Identity = 113/377 (29.97%), Postives = 174/377 (46.15%), Query Frame = 2 
Query:  680 ILCVWSVRFFSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAAGGSIA----SARTMTG--PDGTVYPSSICGNVSLTDTGSLSCQCGGKTILYSSTCQFEGNTVWLACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRGALYRATHGSFGSICKAA---ALTTAVRIFARAMRRLTR-------ACRYC--NFLLEWLQVALDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAALVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVV--VSYLLVTVIVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQA 1750
            +L   ++ +    Q +I F+SANLK A  A       F  ALL+   Q+ W+ + + +A G       S     G   D T Y     G+            CGG              T ++    L SL WG  V++ ++T TVAG VA+WW+  G      GALYR+   SFGSIC  +   ++  A++  AR +R   R       AC  C    +L  L+  ++Y+  +   ++ IYG  F  + + V +LFR RG T V ND   D   +AL  GA +    VAS +G + V  S +S    F  +++   V+   +++  T +  T   V+ ++   VF+CF +DP AL  NH R+ Y +L   WR+  +
Sbjct:  155 LLAAVNICYIYAVQNRIGFASANLKCACAATIKFTGVFWVALLLVIQQIFWLTLWSTSAIGVYGMFKESHPNCQGFLKDNTRYNVDASGD------------CGGA------------GTGFIVFAMLISLYWGQQVLQNILTCTVAGVVATWWYRSGEDGITVGALYRSVTTSFGSICLGSLFVSILQAMQTMARMLREKAREEDNAALACVGCLAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRSRGWTAVIND---DLASSALTFGA-IGVGCVASCIGLIAVYFSPASWFDAFGTKKSGYGVIGAAAFIAGTSVSMTMANVVLASLHTVFVCFAEDPAALQHNHPRE-YEDLISGWRQFHS 502
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN10_ECTSI8.730e-18260.08Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM6_ECTSI1.620e-10645.18Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI3.240e-8845.27Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LGQ1_ECTSI4.720e-8236.69Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM5_ECTSI1.540e-4338.01Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K950_9PHAE2.120e-2743.02Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A067CHQ4_SAPPC1.100e-2628.00Choline transporter-like protein n=2 Tax=Saprolegn... [more]
K3W6P8_GLOUD5.150e-2626.76Choline transporter-like protein n=1 Tax=Globispor... [more]
W4G5R8_9STRA4.000e-2430.71Choline transporter-like protein n=4 Tax=Aphanomyc... [more]
F0W963_9STRA4.480e-2429.97Choline transporter-like protein n=1 Tax=Albugo la... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:227056..241278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN10
PFAMsCholine_transpo
Model size3256
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.33e-189
EggNOG OGsKOG1362@1|root,KOG1362@2759|Eukaryota
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-25_001120.1
Descriptioncholine transmembrane transporter activity
Cds size1710
COG categoryH
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.40.1prot_P-littoralis_Contig136.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 227162..239838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.6667576-UTR-P-littoralis_Contig136:227055..2271611680789628.6667576-UTR-P-littoralis_Contig136:227055..227161Pylaiella littoralis U1_48UTRP-littoralis_Contig136 227056..227161 +
1680789628.7858114-UTR-P-littoralis_Contig136:239838..2412781680789628.7858114-UTR-P-littoralis_Contig136:239838..241278Pylaiella littoralis U1_48UTRP-littoralis_Contig136 239839..241278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.681945-CDS-P-littoralis_Contig136:227161..2274341680789628.681945-CDS-P-littoralis_Contig136:227161..227434Pylaiella littoralis U1_48CDSP-littoralis_Contig136 227162..227434 +
1680789628.7051353-CDS-P-littoralis_Contig136:235858..2360681680789628.7051353-CDS-P-littoralis_Contig136:235858..236068Pylaiella littoralis U1_48CDSP-littoralis_Contig136 235859..236068 +
1680789628.7213385-CDS-P-littoralis_Contig136:236402..2365671680789628.7213385-CDS-P-littoralis_Contig136:236402..236567Pylaiella littoralis U1_48CDSP-littoralis_Contig136 236403..236567 +
1680789628.7340357-CDS-P-littoralis_Contig136:237333..2377671680789628.7340357-CDS-P-littoralis_Contig136:237333..237767Pylaiella littoralis U1_48CDSP-littoralis_Contig136 237334..237767 +
1680789628.7482145-CDS-P-littoralis_Contig136:238184..2383661680789628.7482145-CDS-P-littoralis_Contig136:238184..238366Pylaiella littoralis U1_48CDSP-littoralis_Contig136 238185..238366 +
1680789628.7605302-CDS-P-littoralis_Contig136:238783..2390851680789628.7605302-CDS-P-littoralis_Contig136:238783..239085Pylaiella littoralis U1_48CDSP-littoralis_Contig136 238784..239085 +
1680789628.770614-CDS-P-littoralis_Contig136:239694..2398381680789628.770614-CDS-P-littoralis_Contig136:239694..239838Pylaiella littoralis U1_48CDSP-littoralis_Contig136 239695..239838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.40.1

>prot_P-littoralis_Contig136.40.1 ID=prot_P-littoralis_Contig136.40.1|Name=mRNA_P-littoralis_Contig136.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=570bp
MPAPESAPQELGMTALPTFGRENQQQQSMSTEHSKSLLSPQGRPADDDDF
AYVSNRLGSSSYNNTVAADPPPTDAAWGLAFKINVAITLVSALYFGGSWL
HALNSGVFFMGDGRRHLSTSGEHGGGAFGPAFFFVGVVSIGWAFAWGVLS
AVINFSKEILQVAYLGVAGISGMAAVSALVTRHWLAWTIPAILCVWSVRF
FSKRQPQIRFSSANLKVAAVAVKSMPWTFRTALLMSGVQVLWVLVCAVAA
GGSIASARTMTGPDGTVYPSSICGNVSLTDTGSLSCQCGGKTILYSSTCQ
FEGNTVWLACFWLASLGWGAAVIRGVVTATVAGSVASWWFSPGGVSPVRG
ALYRATHGSFGSICKAAALTTAVRIFARAMRRLTRACRYCNFLLEWLQVA
LDYVLAYTICFISIYGLSFSEAGRRVSELFRKRGVTTVANDVIVDAGLAA
LVLGATVCYVAVASALGQVVVKLSGSSSGGGFLVQETVAMVVVSYLLVTV
IVGTTVEVLRSAFKAVFLCFVQDPEALATNHDRQIYNELSVAWREMQAWC
PGMAVVIDDTDKDGGIQEV*
back to top

mRNA from alignment at P-littoralis_Contig136:227056..241278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.40.1 ID=mRNA_P-littoralis_Contig136.40.1|Name=mRNA_P-littoralis_Contig136.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=14223bp|location=Sequence derived from alignment at P-littoralis_Contig136:227056..241278+ (Pylaiella littoralis U1_48)
CGAGGTTTCTCCGCACTCATCATCCCCCATCATCATGCAAGCCTAGAGCA
GTGCTGCAGTAGAGAAAGAAGGTGAAGAGGAGCAGGCGAGCAACGCACAC
GCACCGATGCCGGCTCCGGAAAGCGCACCCCAAGAGTTGGGAATGACCGC
CCTGCCGACGTTCGGCCGTGAAAATCAGCAGCAGCAAAGCATGTCAACTG
AGCACTCGAAGTCGCTCCTCTCCCCCCAAGGGCGACCAGCCGACGACGAC
GACTTTGCCTATGTATCAAATCGCCTCGGCAGCAGCAGCTACAACAACAC
CGTTGCCGCCGACCCTCCGCCGACGGACGCGGCGTGGGGTTTGGCTTTCA
AAATAAACGTGGCGATCACTTTGGTGTCGGTGAGAATGTTAGCCAGCAGG
GAGGAGAGTGGCCGGGACGGTGGGCCCAGGTTGCTTGGTTGTTTGTGTCA
TGTTTCGTTTCCGAACGCGACCCTCACATGTGTGCGGCATGACACGAGCT
TCACCTTGATTGAGTCTTGTTGTACTCGTATACATTATAACTAGTCTAGA
TCAATCCCAGTTTAAACGCTCCTGCGTACGTGTGACTCGGTGTACTGCTG
TTCGGCAAAAAACATGGAATGTGCAACCAGCACCGTCGTACCCTCTACAG
CAGTAGTACCGGCCCGCTTTTGAGAAAGACCCTACTTGAGCGAGGCTCAA
AACCTTATCTTGTCTCAACCACTGTTGCTGTGGGTATATGTTGTTGTTGA
TTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCA
GGGACATATCGTGCTAGGAGGAAAAATAAAAAAAAGATATAGTAGCTGTC
GCTAAAACGAGCGACAGCTGATAGATGTGCCTGTCGTCAGACGTGTGCGT
CCGCGGGAGGTGGAAGAGACCCTTTCTTCTTCTTTTTCTCTTTGCAATTC
ACTTCATTGGTTACCCGCGACGGCGCTGAAGACGCCCATGTCCGTGTACT
TGACCCTCGTACTCTGTGCTAACTCCCCAAGTCTAAACTCTTCCTGTAGC
CTAGCCTTCATCGTCGACGAATTTCCAAGGTTATCAATCCTGTCGGAATT
CGTGGGCTCTACCATGAGGTCCACAAGTCTCTTCGCCCTACTGAGACAGA
CGAAAGTAAGCCCCGTACAGGCCTCCTTGGGCCCCAAGTCTATGACGGCC
TTGGCTAAAGTCTGCCGCACGCCTGGCGGCAGTCCTCCGACGAGCAGCAG
CTCTCGCCCTGTCAAGCTGTGGGCTGCCTAGGGACTCCCTCTCCCCGTGG
CTTTGTCTGCGCCGCGAGTCTGTGTGCGCCTCTGCCTCACGGAGGGAGTT
CGGGTCAATCGACCCCAACGGACGTCTACTCATGCAATTGCCATACCATG
CAGGCCGCTGTGGCTGTGTCCGCTCTGCGCTGTTGGTGTGTCGCTGTGCC
CGCTGAGCGCGTGTTGTCTGCTGTGCGTGTGTTCAGTGTTCAGTCTGCTC
GCTGAGCGCGTGTTGTCTGCTTTTGCTGCTGCTGTGTTCTCAAAAAAAAA
AAAGTGCGCCCTGTAGTAAAAAATCAAGTCATGTACTCTAAAACCTAGTT
TAAGCGAACACAACACACGCACAAACTTTTTTTCCTCCATCAGCCCCTAT
ATTGCGCTGAGACCTCAGGCAAAAATAGAATCTCGCTTCGCTCGAATAAC
AGGCTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAATA
ACCAAGACAAACCTCAACCATAACCATATACTTCGAAGTACTTCGTACAT
CGAAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAACGCAAACCAGGG
CGATGGTGCAGTAACTACATGATCAACAGACGAAAGACAAAAAAATAAAA
TAAAGAAGAAGAAGGTACAGGGAGGGCACAAAGACTGAGGAAGTGCATTC
GTAGACAAACGCAACAAACAGGCCGCCAAACAAAGAGGAAGCAGGGGAAC
GAAAATGGGAAGAAGACCGGAAGTACCGGAAGTCGGGGGGGGGGGGGGGG
GGGGGGAGGTGATAAAAATAAAATGAAAGGCATGCAATCAATCGCAAACA
TGTCTTGCCACGAGTTCTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACT
CATGCCTCCTGCTACTGGCACCACCGTTCTCAGTTGTTTCTGCCCCACAT
CTTTGGCAGCAGCTACACCACCACTCCGCCCTACAGGTTTTCCACTCCGG
CCACCCCGTAGCTTGGCATTGAACTGCTTCTTCTTGTGCTGTGCAACTCC
AACCCCACTACCCCGCTGCCATCGTGCCCCCCCGTACCCCTCCCCAATAT
TGCGCTGAGACCTCAGGCAAGAATAGAATCTCGCTTCGCTCGAATAAAAT
ATACTAGTATGGACTAAAATAAAAGGCATGCAATCAATAGCAAACATGTC
TTCCCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCATG
CCTCCTGCTACTGGCACCACCGTTTTCAGTCGTTTCTGCCCCACATCTTT
GGCAGCAGCTACACCACCACTCCGCCCTACAGGTTTTCCACTCCGGCCAC
CCCGTAGCTTGGCATTGAACTGCTTCTTCTTGTGCTGTGCAACTCCAACC
CCACTACCCCGCTGCCCTCGTGCCCCCCCGTACCCCTCCCCTATATTGCG
CTGAGACCTCAGGCAAGAATAGAATCTCGCTTCGCTCGAATAAAATATAC
TAGTATGGACTATGATCACCCACAGTCAAATCAGATAAGGTACCGTTGGG
GTACCATCTGTGGCGGCCAGAATACCAAACAAATACAGAAAAAAATAACA
GGCTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAATAA
CCAAGACAAACCTCACCCATAACCATATACTTCGAAGTACTTCGTACATC
GAAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAACGCAAACCAGGGC
GATGGTGCAGTAACTACATGATCAACAGACGAAAGACAAAAAAATAAAAT
AAAAAAGAAGAGGATACAGGGAGGGCACAAAGACTGAGGAAGTGCATTCG
TAGACAAACACAACAAACAGGCCGCCAAACAAAGAGGAAGCAGGGGAACG
AAAAGGGAAAGAAGACCGGAAGTACCGGAAGTCGGGGGGGGAGGTGATAA
AAATAAAATAAAAGGCATTTAATCAATAGCAAACATGTCTTGCCACGAGT
TCTGCCTGTTCACGCTTGCTCTCCTCAGTTGCACTCATGCCTCCTGCTAC
TGGCACCACCGTTCTCAGTTGTTTCTGCCCCACATCTTTGGCAGCACCAC
TCCGCCCTACAGGTTTTCCACTCCGGCCACCCCGTAGTTTGGCATTGGAC
TGCTTCTTCTTGTGCTGTGCAACTCCAACCCCACTACCCCGCTGCCCTCG
TGCCCCCCCGTACCCCTCCTCTCGTTTACCCCCGCCATCCGTTCTCCCTC
TTTTGGTCAAGGCCTGCCCCTCAGCCGCGTCCCTCTCCCTTTCCGTCGAC
GTGTCTCTGATAAGTCTCCCTCTTTCTTGAGCCACTCGTCCGTGAACCAC
CGCGCACCCTCGTCGATCCTGTCGTACCACTCGTCAGCTCTCTTGGCACT
TGCCTCCCACCCCTCTTTTTTGTCGACCACGATGTCGAACGCTTCGAGGT
CCTCCTGCATTCGCCTCAGTCAGTCAAACTCTTGCCCCCCCAGATACCTC
GCTCCCCCCTGCAATTCTCCCAAAAGAGCAATTTTCGGGAGTCTCTCGTC
TCTCATGCGCGCAACGAATCCTGCGAAGCACAGTCGCCGCTTGCGCACGG
TGGCCTCAACGTTCTCGTTGCAACCCGCGGTGATCAGGGCTTTGGGGTAG
GAGAGGGGTCGGTCTGTTCTCTCCCTCTTTTTCCATCCGATGCAGCGAAG
GAGGAAGAAGTGGTGGGCTGACCGAAGCTTGCGGTACTCCGCTGGCTTCA
GATTCCATGTGACACACCCGTAGAGTAGGGTCTCCAAGACTTCAGCTTGG
AGTCGTACTTTTAGTCGAAGAGGGACCCCCGGGCGGTCGTTTGTGTGTGT
CGTTGATTCTCACACTAGCTCACTACCGTATCCAAAGTCCAGCCCGTGGC
ACGGACCACAAATCTGACACGTATCATACCACTCTACTAAGGTGTTTGCC
AGTAATGGATATCAATTGAAAAACAGCTCTATCTATGCGATACGGAGTAT
TTTTTTATCGGCAAAAAAAAAAGGCGATACCTGATGTTTTGCCGATATTT
GAGAAAGTGGCCGATATTACGCGATACACCATAAAGTCTTGAGACAATAT
CGACATTCGTCGATTTGATCGATTTCGGCCTCGATATCCGGCGATTTCGC
ACTAAAATCTAAAGAAAAATCGCCGTTTTCTTTTTATGGCGTCAAAATTT
GTTGTTGCACGGAGCCCCCAACGTCGATTTTCCTATGACACATGCACATC
AGTCTGCTGGATCGCGACCTGTAGTGCTGATCCAAAATTATACCAACGTT
TTTTGGGGAGTGCATCGACCAAGCTGTACATCCTCCGAGTTTCAGTCGAT
TTGGTGAATCTACGAGTGCACAACTTTGATCTAAAGTTTTTTTGGAGCAC
GAAAAAACGGTGGAATGCTGGCTACGTTTTCGGAGGTGACATTTTGTTGT
GCGTGCTTCAAAATGTTCAACCTTGTAAACTACTGGAGTTCAGAGTTGTT
TGGGTCAATTTTAGGCAACTTTAAGTTTTGCAAGCCCATCGTCATCGCTG
TAGTGCTGATCCCAAATTTTACCAACTTTTGTTGGGTAGTACATCCACCA
GGGTACACACCCTGCGAGTTTCAGCCCATTTAGTTCAACAACGAGTGCAC
AACCTTGGCACGAAGTTTGTCTCCTGAGAGCTAGAAACGAGCTCCGGACG
CACAGATAACCGGCTTGCTTCCAGTTGCGATGGCGCAGTATTTCTTCAGT
TTGGAGATAAACCATAGCATATAACCTACTGGAGAAGGTAGAGCACGACC
CTCTTGAGACCTCCCGCCGATATCGTAGCGAGTCGGGGTCTGTGTGAGGA
GCACCACCGGCGACAAAGGTCATGACCCCGAATGGTGTTCGCAGCACAAA
TTCACAAATCTGAGAATAGCTCAGAGTTTCGTCACGTGGTACCCGCCCAA
AGCTTTTGTCGGTATTAAAAAAAAAACACCCAACGCAGCACATGTGTTCG
GCTCCTGGCCACTTGGAGAGGTAGGGGCCACGGGGGTGCCAAAGAAAAAT
AACAGGGGGTGGGTGGGGAAACGGGTACCCGTGGATGAAACTAACGTATC
GGCATGTCGCCTTCAAAATTCACGATATCGATATGCCCGTATCGCCGGCG
ATATGCCGATATGTTTTTGGTGATATGATTTGATATCTATCACTGGTGTT
TGCGTAGACCTGACTCGACTAAGATTAAGATTTCGCTCAGATTTGGTCTT
TTTTGTTCCCCCGAAGACCAAACCTGAGTGGATCTTTAACATTTTGGGCT
TTCGCTCAGCCGAATTGCTCCCAAAAGACCAGAGAAAAAGACCGACTTGG
TCTTGCTCCACTATGGTTTGGCTTTGGGCTTTCGGACTATATCCCTAATG
GCAAGCACCCTCGAATAGAGTGGACACCCCAAGCCACCGAAACACTTAGA
CTTTGTACAGCAGTGTTCACCGTCGCTTGGTCTGTCCGAGGAGGTTCCAG
TCCTACTGACTGCTGTACGCAACAAAACTGCTGTACAACATTTTCTGATT
TACTGGCTTGCCGTACACACTGGTAGCCACATACGCTGGGGCAGGCAACG
TCACATACTCAGCCGCCCGCGAAGCTACACAGCCGGTCTCTCTGAGGCTT
CTTTGGTGCCGTCATGCGTTTGTTTTGTTGTGTGTGATAATATGGAGGGT
GATGCGCGTGCCTGTAAAAACGCGTGTGCAAAGAGATGCGAGTCTAAAAC
CACGCTGCTGGCAAACAGTTCGTACTCTTTGTCAAGTGGTCAAGGCCGCA
TGCCCAACTGGCGGTGGACCGAAACTATACTGCGGTGTCTGCGTGTGTGT
GGGTGAGGCGGTGCGGTCATGTGTGAGAGAGGAAAGTAGTGGCGTAGTTG
TGTGTCTTGACACACACTCTGTTCTCACGTTGTATGTGATAGTGTTCCAG
AAATAACCCGACTGCTCTCAAAAATGACGTCACTTTTGAAAATGAATAAC
TACTCTGTTAGAGCGGGGATTAAGAGCGGGGATTAACGGAAGGCCAAAAA
AAACGAAATAGCGGAAACAAAAACGAAATAACTTCGTTCTTCAGGAAAAA
AAATAAAAAACTCTATTTCGGTATTATTATCGCGTTTCTGCTGCGAGGAG
CTGGAGCAGCGGAATGGAGGAGATAACGCCAAAAATGATGTAGACCCAGA
ACACACAGTCTGTGAGAAGGAGTTCGCTGCCTGGGAGGCTCATGGGCAAG
CCTCCCAGGTTACCAAACTCCGTGCATTTCGTTTTCGTTTTCGCAAAAAA
AAAGGTCCGAAATACTTTATTTTTGCGAAATCGAAAACGAAAACATGCCT
CTTTCGTTTTTTTCTCACGACCAATCAGAGCCCAATTTCGTTTTCGTTTT
CGCTATTTCGTTTTTTTTGGCCTTCCGTTAATCCCGGCTCTAACGGTAGA
CAAAAAAAACGAAATTTGGACTGCACAACGAAATTAACTTCTTTTTCGCA
GGAAAACGAACTGTTGGGTACAAACGATAGAAGGTCTTCTTTTTTTTTTC
GGGCTGTGACGACGGACCTGTCACCAGGGTCCTGGAGAAGAGGGGATGAA
CAAGAGCAACACCATTTGCCTTGACTCTTCAAGCAGCAGCAGTGTTGACG
TTTCCACTGATATCTCGCCCCAAGTCCTGACGAAATCCCCTTTCAACCGC
ACCGATACAGAGATATGTCTATCCTCTATGGGAAAAGGCTGAGGTTCGGA
GTACCGCCACGCACGGACACGACAGACAACGACTTTCGAAGCAACCCTCT
CTCTCTCGAAAGAGGCAAAATTGACTGCTTGTTGTTTGAACTTTTGCAAC
GACTGATGCCTTGCTTCCCGCCACGCTTGACACCCCGCTGCCCCAAACTT
GGGACCGTACCGATGGCCAGTAAGATCAGCTCTCTAGGGACGCAGTTGGT
AGGGAACCTCGTCCATATTTCGCGGAGTTACCGGTGGAAACGTGAACTTG
GCTGCTTGCAAACCTCACCCCAAAATCGGCTCAGAGCACGAGCAGATCAA
CGTGGGTAGATTGAAAAGTTTTTTCCCGTCCCGCTTGACACCCCACTGCC
CCAAACCTTGGGCGTTTCTAGTTGACGCTAAGCTCATCTCTCTAGACATC
CAGTTGGTAGGGAGTGTCGTCCCTTGTGTAGCGAGATATCAATCAGCATA
TGAACTTGTTTGCTGTGTAAAGGTCAACCGGATGTGCCTCGCAGAGCTGA
AGCATCCCCGCCAAAAGCCTTCCGTGTTGAATTTCGTTTTTCGATTTCGC
AAAAAAAAAGATCCAAAATACTTTATTTTTGCGAAATCGTAAACGAAGTA
ACGCTTCCCTGGAGGGCGTTGAAACGAAAACACGCCTCTTTCCTTTTTTT
GCCCCGACCAATCAGAGCCCAATTTCGTTTTCGCTTTCGCTATTTCGTTT
TTTTTCTCTACCGTTAATCCGGGCCCTTACCAAAGTCGAGCCGAAAAGAC
CGAAACCGAGCCAAAAACACCACTCACTTCGGTCTTCGCACTCAGATTGT
GGAGGAAATTCGGGTAAGATTTCAAATCCTAGTCAGACCTTCAATGGTCT
GCAGGACCTTAGTGGAGTCATGTCTACCCAAACACCCTACTGTAAACGGG
TATACGAAGTACTCCGTATATGATAGGAGGAAAATAGCAGAAAAAGAAAA
TAAACGATTGTCACGCACGCAAAATCAGAACTACATTATCTGATGACTTA
CGTTTAGAAACGATTACACAAGTAAATTAACGTGTTTGCTTTTACAGGTA
TTCCTCTTTCGTGTTCGTTGTTAATCTACTCCAGATCCTCGTCTGGAGAG
AGGCGGACACACTGATGTGTACGCAAAAAAAAAAAAAAATCGGATAAAGT
ACCGTTGGGGTACCATCTGTGATGGCCAGAGAACTAAAATACAAAAATAC
AGGCAGAGAAACAGGCTCGAAAAAAACATGATATAGATTGTGTTATCATA
CAAGCGAATGCGTTTGTGTGCTCCTTTCCATTTCTTTCGGCAACAGTCCA
AAACCTTCTGTGTGAACCTTCCGTTTGTGTGACCCCGGCTTTGTAGTGCA
CCCATTCCATACCAAGAGGAACGAGAGGTATGGACTGGTGCCCAGAATGG
GTGGGACGAAAACACACACACACCAGTCTACACCTTTCGGCACCAAGTGG
ATGCATCAGCTGGGGTCACACAGAAGGAAGGTCACACAGGAATTATTTAC
ACTGAAATTTATTACGGCTCACATGGTTCCTTCTATTGTCTACTTCGAAG
TAGTACAAGTCATAACATCAAGTAGAGCTCTGCCCGCTGAGCCCGGTATT
GTATCATAGGCCGGATTCCTTTTTTCTCACCATACGCACATGATACGATA
CACAGGTCGGCACCGATTTCTGTGTTGGCTTCTTCGCTTGATCGGTTAGA
GCCGGTTAGAGCCACGACAATATAACAAGTTCCCTCAGAAGCCCCATCCA
GAGCCCTCTAATCCTCACCCCGGCTCTCTCGAACGAAACCCCTACTTTTC
CAGGCGTTGTACTTCGGTGGCAGTTGGCTTCATGCACTCAACAGTGGGGT
CTTTTTCATGGGAGATGGCAGGAGACATTTGTCCACGAGTGGCGAACATG
GTGGCGGGGCCTTTGGTCCGGCGTTCTTTTTCGTGGGGGTTGTCAGCATA
GGGTGGGCGTTCGCGTGGGGGGTGCTGTCCGCAGTCATCAACTTTTCAAA
GGAGATCCTCCAGGTGCGGGTATCAGCGAGCCGCAGCAGCAGCAGCAGCA
GCAGAGATAGCAGCACATTTTGTATTTTACTCGGTGTCTCGAAAGGCAGA
GTCGATGTTTCGGAGGAGGCGGTCTGTCCGCTCTTCCCTTGTCTATCGAT
GACCCTCTCTTCGTTGACAGGTGGCGAGATGTGCACTGCTGTAGCCTACC
TAGGCCGCCACCTTTTTAGTCTTTCTCTGGAGGATCCCAAAACCCTGAAA
CTGGACATCGTCTACCACAACCGCCAACCACACAAAACTACCCACTTACT
TTTTGCTGCTCCAACCCCCGACTCTGGGGTTTACCTCCTGCTTTTAGGTG
GCCTACCTCGGCGTTGCCGGAATTTCGGGCATGGCGGCAGTGTCCGCCCT
TGTCACCAGGCACTGGCTCGCCTGGACCATTCCCGCCATTCTTTGCGTTT
GGTCTGTTCGTTTCTTCTCAAAGCGCCAACCTCAGATACGGTTCAGCTCC
GCCAACCTCAAGGTTCGAAACCGCGTCGTTCGGCTTCGCCGAGGTCGTGA
TAAAGTCAAAATAGTGTAGGATTACTAAGGGCTAACTTGACAAACCGCGA
TTCGCCCACTCGAAGATGAACGTGGTGTAAACAAACCTTACGGCTTGATT
CACGCCACGCGAGGCAGATTTGAAGGCTGCACACACGACAGCGTCCAATA
GTCGTCATAGATCACGTTTTAACATGGGGCACCTCAACAACAATGCACGT
GCTTTTTTCAGAAGGGATTCCGCGATGTAGCACCCATTCGAAGGCGCGTG
CTGCGTGGTTTGTAAACATGCGCTGCGTGTTCGTACCGCTGGTGCCGATG
CGGTTCCGTCGTTGCGCGTACGTTTTGACTCAAAGGCGCTACCGCTCGAC
GGCAACGCTGGAACGCGATGTTAGACTGCCACTCTTTACCGTGTACTGCT
GTGCTCGAAAATCTTCCAGCCACGTGTGAAAGCCGACTACACAGAACGGG
GTTGATAATCCCCTTCCGGCATTGGCTAGGGTCAAACCATTCACATGCGG
AAGCGCACGCAATAACTGAGCACGCGGGCTCCACAGCTGCGGCCACGAAT
ACCCGTTACTGCACCTTCAGTGTGGTAGCTCTTAGGGTAACGGTGTTTCG
TCTCTCATGGAATGCGATGCGCGTTCAACGGTGACAACGATACCGCCAGC
AGTAACTGAGTAACCCCCCTCCCCCCGCCCGTGGCCGCAATCACCCAACG
CAACTCCCCCATCCGCGAACGAAGTCAGGTTGCTGCTGTGGCGGTCAAGT
CGATGCCGTGGACGTTCCGCACCGCCTTGCTCATGAGCGGCGTTCAGGTT
CTGTGGGTTCTGGTGTGTGCCGTGGCCGCCGGAGGCTCGATCGCTTCCGC
CCGCACAATGACCGGTCCGGATGGGACCGTTTACCCCTCCTCCATCTGCG
GCAACGTCTCGTTGACGGACACTGGCAGCCTCTCCTGCCAGTGCGGGGGC
AAGACCATCCTGTACTCCTCCACCTGCCAGTTCGAGGGGAACACGGTCTG
GCTCGCCTGCTTTTGGCTGGCTTCCCTTGGCTGGGGGGCGGCAGTCATTC
GGGGCGTGGTGACGGCGACAGTGGCCGGGTCGGTGGCCTCGTGGTGGTTT
TCCCCCGGGGGTGTGAGCCCCGTGCGCGGTGCCCTCTACCGTGCGACTCA
CGGGTCGTTCGGGTGAGAAAGGTTGACAAGTTTTGCTTTCTGCAACACAA
ATATGAGGCATTTTTAGGTTGACGTGAGGGGGAAATCACCGACAAAACCT
CGAGCGATTCCAGTCTCGAAAGGTACGTAGGGTGCGAGCGGTCTGTTTCA
CGTGTTGCCGTGGGTAGTTCATGGCCGCAAACATGTTCGTGGTAGGATAT
GTTATTCTCAAGAATCATCCAGTTTATTCTCTCGTCCGACCAGGTTTTTT
TCATCCCTCCTTCAAACATAAAAAAAAAAAACCTCCCAACACAACCCTCC
CTCCCCCATTTCTACATTTACTTGCTGTATTTTGAAGCTCTTACCAAAGC
CCTCTCTCCCCACTCCCCGTACACGCACAACCACAAAAACAACCCCCCCC
CACCCCGTCGACCCGTCGACCTGGCTTAGGTCAATATGCAAGGCAGCTGC
CCTCACCACGGCTGTCCGGATTTTCGCCCGGGCAATGCGCCGCCTAACCA
GAGCCTGCCGTTACTGCAACTTCCTCTTGGAATGGCTACAAGTTGCTTTG
GACTACGTTCTGGCCTACACCATCTGTTTCATCTCCATCTACGGCCTGAG
CTTCTCGGAAGGTGGGCACGGCACGGCCCGGCCCGCCTTAAGTTTGTCGA
AAACGCGCGCGGACGTGCGTGTGTGAGGCCGGCACAATTCAGCCTGATCG
CGTTGCGCCAGGCCAAAGAGGTGCATGCACAAGTCGTCCGCGCTTTCCGA
ACAAGCCCGTCTCCGCCCTCCGTCTGCCTCCCCTACCCCGACCCAACCTA
ACATAGCTGCGTCAGCTGTACATATCCCCATTGTTCCCCCCCTTACATGG
CGAAATTATTTATCTCTTCCCCACCGACATCGCGGACGTGCTTCTTCTTC
AAATGCGTCAAGTGCACCACACGATTGGGAAACAGAGTTAGTACATGGCT
TCACGATATTCCTTTAATCCACTCCCCCCTCCTCCCTCTCCCCTCTCCCC
CCTTCCCCGACGCGCATCTAAAAAAAAGCCGGCAGGCGCGTATCGGAACT
ATTCAGGAAGCGCGGCGTCACCACCGTTGCTAACGACGTCATCGTGGATG
CTGGTCTTGCCGCGCTCGTGTTGGGGGCTACCGTTTGCTACGTGGCCGTG
GCGTCTGCGCTGGGGCAGGTGGTCGTCAAGTTGTCCGGCTCGTCGTCAGG
AGGAGGGTTCCTCGTCCAGGAGACCGTTGCAATGGTCGTTGTCAGCTACC
TCTTGGTTACCGTTATTGTGGGCACGACGGTGGAGGTCTTGCGGTCTGCC
TTCAAGGCCGTCTTCCTCTGCTTCGTGCAGGTGGTGAAAGAGTTGTTGCT
GCTGGCGGCGGGGTGGTGGCTGTTGTCTTCAGAGTCAACGCCGTTCCGAC
CTGTCGGCGAGCGAGAGCTCCGGTTCGTTGTCGCAGGGTTTTCGGCATGC
CGGGAAGTTTGCAAAACTGCTGTTGATAACAGGATTAATTTTCCCGCGAT
GTTTGCTGCTGCTGCTGCTGCGCGCTCGGCCTGTCGTGGACGCGTAATTT
TTCGCTGTCGTTCTGGCTGCTTCGTATGTGCTCTAAGTTCGTCACGTCAG
AAGCTCCTGTGTTTTTTTCCCATTCCCCCCCTTTAAAAATCTTCTCCCTT
CTTGCATCGCCTTTGTCGTGCTTTTCCCCTCCGCAAGGTCGCTTGTGCTG
ATAAATGTGACGCACTATCTCGGGCGTGATTATTCCTCTGGTTGTTACTT
TACCCCGCGCGTTTGGTATGCTCCCTCTGAAAACTTCATACCCAAATTCC
TTTTCCCCAAGATGCGCCACCTGTTGCAGTATCAGTTTTCCACAAAACAA
AATTTCGCAAAAAACTCGTTCACCGTGTAAACACTATTTCATTCTCCGGG
ATCGGTTTCTTCCTATGCTCTCTCCCGTAACGCACGCAGGACCCGGAAGC
GCTCGCGACGAACCACGACCGCCAGATCTACAACGAGCTTTCGGTTGCGT
GGAGGGAGATGCAGGCTTGGTGTCCGGGTATGGCTGTAGTAATCGACGAC
ACCGACAAAGACGGCGGGATTCAGGAAGTCTAAACCGGCCACGGCCACGA
CAACACAGAGAGGAAGGTGTTGCTGAACGTTCGCTCTCTACCCGGCGAAA
CAGCCACGCACATGATACACGTGTCCGCCGGAGCAGGCGTGCGGTGGCTT
GACGAGCGCATAATGCTGTAAATCACGCAACGCGGGAACCCTTTTCCAAC
TAAAACTCTGTGATGGCGTTCGTTCACACGGGACTTTCGTTCGGGTGCAC
CGCTGCTTGCGGCCACCCGTGGTGTAAATAGCGGTGCCCAAACGGCCCAT
TGAGTGGGTTCACCATGTAGTTCGTATAATACTTCGTATGATACTACAAA
ATACCTCAATCTAGATTAAAAACAGTGATGTCGTGTCTTGCCTTGTCCGT
CCGGTATCATATCGAAATCTTCGCCACGCTGTTTGCCGTGTATGATGCAT
GAGCAGCAGCTCAGTTTGCTCGGACCGGTTGCTGCAGTCAGTTGATGCGT
GGTCATCGAGTCTTGACTGGCCGAAAATTCGAGGCGGGTGTGGGTCTCAT
CTTCTTGCGGTGTGGTGTCTCTCTGCCGAATGTTTTATTTCGACGTTTTT
CTTGTAATTCCTGGTATGTTGCTTTGTTTTGTTGTAATGTTTTTCTCCGT
TCGATCTCTGCCAATCCGAGCGGTCGGTTCTGCCTGCGTTTTTGTTTCTC
TCCGTTTCCTGTGTAACCGTTGCTGCTTCTGCGTAGGTTTCTGAGTATTC
GGTCTTGAAATCTTCGTGCGACATGGGAGAGGGATATTCCGCGCCTCTCT
TATTTTTGGCCCGTACTATCATTTTCAATCTGCGTCTTTGCCTGTGATCC
CGGAAGGAAGCCGTATCTCACCGAGAAAAGTTGGAACGGTTTAGCAGATT
GAAGACACCGTCGAAAACATCAACCGCTTGCGCGAAGGAGGCGCGCTACT
GTACGTTTTTTTCTAGTCGTTAAGTAGCTGGTTTTCGCGAATAATACTTG
AGAGGCTTACCCCGTGAGTTAGGCCCAGCCAGGCTGAATTTTGTTTTGTT
TGAGAAGAGGGGGTTCAGGTCGGGGAACGACACCATTCCTCTCGGTAGGG
GCGCGGTCTATTCAGCGGACCAGACTGCCATATCATAGAGGTCGGCCATC
ATCTTCACGAGAGGTGACGAGTTTTATGTAGCATTAAAAAACAGCTGACT
ACCGGCGCATATGGTTTCCTCCCTTCTTCAGATTCTATTGTTGTCTGTCC
CGCGCGAGACTACATAAAAAAGGATTGGACTAAAATAAGACCGCGGGTTC
ACCCCCAGGCTTATGATGGAAAAGTCGCTGGTTTGTCCCAGGCCAGACGT
GAAACAGCCGTGGCCCTTGATCACCTCGGGCGCAAGCCCACAGATGGTCT
TGTTAGTGGATGCTATCGAGTGAAACACAATCTCCGGGGGAGACGGGGAT
GCAGGGGGGGCGGGACACGTGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig136:227056..241278+

>mRNA_P-littoralis_Contig136.40.1 ID=mRNA_P-littoralis_Contig136.40.1|Name=mRNA_P-littoralis_Contig136.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1710bp|location=Sequence derived from alignment at P-littoralis_Contig136:227056..241278+ (Pylaiella littoralis U1_48)
ATGCCGGCTCCGGAAAGCGCACCCCAAGAGTTGGGAATGACCGCCCTGCC
GACGTTCGGCCGTGAAAATCAGCAGCAGCAAAGCATGTCAACTGAGCACT
CGAAGTCGCTCCTCTCCCCCCAAGGGCGACCAGCCGACGACGACGACTTT
GCCTATGTATCAAATCGCCTCGGCAGCAGCAGCTACAACAACACCGTTGC
CGCCGACCCTCCGCCGACGGACGCGGCGTGGGGTTTGGCTTTCAAAATAA
ACGTGGCGATCACTTTGGTGTCGGCGTTGTACTTCGGTGGCAGTTGGCTT
CATGCACTCAACAGTGGGGTCTTTTTCATGGGAGATGGCAGGAGACATTT
GTCCACGAGTGGCGAACATGGTGGCGGGGCCTTTGGTCCGGCGTTCTTTT
TCGTGGGGGTTGTCAGCATAGGGTGGGCGTTCGCGTGGGGGGTGCTGTCC
GCAGTCATCAACTTTTCAAAGGAGATCCTCCAGGTGGCCTACCTCGGCGT
TGCCGGAATTTCGGGCATGGCGGCAGTGTCCGCCCTTGTCACCAGGCACT
GGCTCGCCTGGACCATTCCCGCCATTCTTTGCGTTTGGTCTGTTCGTTTC
TTCTCAAAGCGCCAACCTCAGATACGGTTCAGCTCCGCCAACCTCAAGGT
TGCTGCTGTGGCGGTCAAGTCGATGCCGTGGACGTTCCGCACCGCCTTGC
TCATGAGCGGCGTTCAGGTTCTGTGGGTTCTGGTGTGTGCCGTGGCCGCC
GGAGGCTCGATCGCTTCCGCCCGCACAATGACCGGTCCGGATGGGACCGT
TTACCCCTCCTCCATCTGCGGCAACGTCTCGTTGACGGACACTGGCAGCC
TCTCCTGCCAGTGCGGGGGCAAGACCATCCTGTACTCCTCCACCTGCCAG
TTCGAGGGGAACACGGTCTGGCTCGCCTGCTTTTGGCTGGCTTCCCTTGG
CTGGGGGGCGGCAGTCATTCGGGGCGTGGTGACGGCGACAGTGGCCGGGT
CGGTGGCCTCGTGGTGGTTTTCCCCCGGGGGTGTGAGCCCCGTGCGCGGT
GCCCTCTACCGTGCGACTCACGGGTCGTTCGGGTCAATATGCAAGGCAGC
TGCCCTCACCACGGCTGTCCGGATTTTCGCCCGGGCAATGCGCCGCCTAA
CCAGAGCCTGCCGTTACTGCAACTTCCTCTTGGAATGGCTACAAGTTGCT
TTGGACTACGTTCTGGCCTACACCATCTGTTTCATCTCCATCTACGGCCT
GAGCTTCTCGGAAGCCGGCAGGCGCGTATCGGAACTATTCAGGAAGCGCG
GCGTCACCACCGTTGCTAACGACGTCATCGTGGATGCTGGTCTTGCCGCG
CTCGTGTTGGGGGCTACCGTTTGCTACGTGGCCGTGGCGTCTGCGCTGGG
GCAGGTGGTCGTCAAGTTGTCCGGCTCGTCGTCAGGAGGAGGGTTCCTCG
TCCAGGAGACCGTTGCAATGGTCGTTGTCAGCTACCTCTTGGTTACCGTT
ATTGTGGGCACGACGGTGGAGGTCTTGCGGTCTGCCTTCAAGGCCGTCTT
CCTCTGCTTCGTGCAGGACCCGGAAGCGCTCGCGACGAACCACGACCGCC
AGATCTACAACGAGCTTTCGGTTGCGTGGAGGGAGATGCAGGCTTGGTGT
CCGGGTATGGCTGTAGTAATCGACGACACCGACAAAGACGGCGGGATTCA
GGAAGTCTAA
back to top