mRNA_P-littoralis_Contig136.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.37.1
Unique NamemRNA_P-littoralis_Contig136.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig136.37.1 vs. uniprot
Match: D7FN12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN12_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.730e-9
Identity = 87/250 (34.80%), Postives = 119/250 (47.60%), Query Frame = 3
Query: 1827 GGNNVGFASGYA----GSRSRVTMRVPQLPQSFSGPSEEGNQKERAEQSKGHQQGKPTILDALDDMCVSDETHHGLDA-HSSATNHSNKSGFGEETKAISGGIYGNGRIDGSNGCDEGHTEDNIENPRKACGVTTPISGDD-------GSLAAMETAK-----YSGQSGAYGDSD----ERGVG-IVKRVGAFLETLESA-TCRKTMVTLEVGMGSAVQV-MNERKFLDLHDTKEGIGELLVALGATASA 2504
            GGN+ G  SG+A    GS      R    P  F+G + EG   E+    + H Q   T+L A ++  VSD      +A H S T  +  +G     +A   GIYG    +G+    +GH    +       G+ +PI+  +        S AA ET       +   S  YG S      RG   ++ R G FLE LE   +  + ++ LEV   S V+V M ERKFL+LH+TKEG+GELL ALGAT SA
Sbjct:  171 GGNDAGVGSGFARLDIGSPPTAAKRFSVPPLVFAGLAGEGKGVEKWV-GQPHGQHALTLLHAPEENDVSDAGSGSFEALHPSLTTPNIHTG---RERAAGSGIYGR-FSEGTRYDHDGH----VAGTAADSGMGSPIASAETARNLVSASGAATETPGGAEKLFRDYSNTYGSSACGIAGRGAKELILRAGTFLERLEKVGSGEEGLIMLEVDGCSVVKVVMEERKFLELHETKEGVGELLTALGATCSA 411          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN12_ECTSI2.730e-934.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:196571..201966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3620
Hectar predicted targeting categoryother localisation
Exons3
Cds size2247
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.5796375-UTR-P-littoralis_Contig136:196570..1976801680789628.5796375-UTR-P-littoralis_Contig136:196570..197680Pylaiella littoralis U1_48UTRP-littoralis_Contig136 196571..197680 -
1680789628.623339-UTR-P-littoralis_Contig136:201171..2013561680789628.623339-UTR-P-littoralis_Contig136:201171..201356Pylaiella littoralis U1_48UTRP-littoralis_Contig136 201172..201356 -
1680789628.6348667-UTR-P-littoralis_Contig136:201888..2019661680789628.6348667-UTR-P-littoralis_Contig136:201888..201966Pylaiella littoralis U1_48UTRP-littoralis_Contig136 201889..201966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.600482-CDS-P-littoralis_Contig136:197680..1977341680789628.600482-CDS-P-littoralis_Contig136:197680..197734Pylaiella littoralis U1_48CDSP-littoralis_Contig136 197681..197734 -
1680789628.6129901-CDS-P-littoralis_Contig136:198978..2011711680789628.6129901-CDS-P-littoralis_Contig136:198978..201171Pylaiella littoralis U1_48CDSP-littoralis_Contig136 198979..201171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.37.1prot_P-littoralis_Contig136.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 197681..201171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.37.1

>prot_P-littoralis_Contig136.37.1 ID=prot_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=749bp
MEETAQQPQFGHPAEAVDVSYQKPAGAVQQETVGFICSSGQEREPDVLLS
PVKPSQFHMSENKAITGGPETPESDSGRNGEHNDSRAAPTLTLQDTDHKG
DIGSGSGNHASVPRNSDVEIDGLFDGLKIESGGDLVKAKNEKQESEGRET
LRASTQGLKNRVELESFKRLDAESRTETLEVEVQVLADRWSSEIAAREAA
EANAKRYMDLFTEARAAWQHTQGIVENKEKELIAAEHKINRKTGDWGSMQ
SRLEEAKKTKELHRQHSLVLKQALEGSLSKESTFSPISSAETIVALPSPE
NEDKALPENIDACGSGGKAKSPSAPSSKVAAGPEAGGIRYVPSSQPKLEE
EREAAAEARLQMAITIAAARSKTVTATSLVQKKAQLKHVQQQGPMQQGNY
AWPSSPRRQRAPTSKGTPLSPMTVSCVPPTTTSTALQHHAHQQHARRQQD
GNQARLCRELEKPVPAAQKGDDAQLPLDDPYTPGTTPTAFTSFPQPLPCR
SRSVSATKQPEVGEGNGRSNNGGNNVGFASGYAGSRSRVTMRVPQLPQSF
SGPSEEGNQKERAEQSKGHQQGKPTILDALDDMCVSDETHHGLDAHSSAT
NHSNKSGFGEETKAISGGIYGNGRIDGSNGCDEGHTEDNIENPRKACGVT
TPISGDDGSLAAMETAKYSGQSGAYGDSDERGVGIVKRVGAFLETLESAT
CRKTMVTLEVGMGSAVQVMNERKFLDLHDTKEGIGELLVALGATASAF*
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mRNA from alignment at P-littoralis_Contig136:196571..201966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.37.1 ID=mRNA_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5396bp|location=Sequence derived from alignment at P-littoralis_Contig136:196571..201966- (Pylaiella littoralis U1_48)
CACGCAGTAGTTAGCGGAAAAGAGACCAGGAGATTCAGGAGGAGGGTCAA TAGCGTTCGCTCGAGGAGCACTTGAAAGGTGAGGGCGGGTACCTCGTTGG TGTCGGCTGGTCTCCATGACATAAACTAAACGGGTGAGCTACAGCATGTT ACTGCACATTGCGCCTCGGTGCGTTGTCCTGGGGCTGGCTTCGTGAATCT ATTCATTTCTCTGGTACTTCCATCCAGCACTCACTTCTCGATCAGCAGCA TCCACAACAACCCTTGCAAAACACAAACGGCGCTCTGACAACACCTCGCA AAAATCCCGCGACCAGAGAGAGGTCGGGCGGCGGCGAATTCCCCCGCTAC ACTATTTTTCAGGTAGACTCGGTAGCGGGTCGTAGTCTTGGGGTGTCTTG ATTCCATCTTGTAAAGACTGCTGTGCCCTGTCTAGAACACAATCAACAAG CTGCGTGCCGCATGGTGTCCACTACGCTACTCTACTGCTTCAGATAGTGG CACCCGTAAGCCTCGAGATCTTGCTGGTGTGCGCTTCGCCTTTCCTGTCT GCGTTTTTGCACAACTGGTTCATAATATGCATTTTGCTCGAAATCCTGTC CAATTCTCAGGGAAGCCGCTGACGCCCCGAGCTTCCCACTGCAGTCACGA CGTGGGCGACAAAAACACGGGGATCCTCCGTCTTTGCTGTGTCCTATAAC AGTAGACGCGCACAACGCGGAGCAAGCCGTGCTACTTGTCATCAAACCAA CTCGACAAGGAAGCTACATATAGCGTGAGTCGTTGGTCTCAAAGCATGGA GGAAACGGCACAGCAACCACAATTTGGTCATCCTGCCGAAGCGGTAGATG TGTCGTACCAAAAGCCAGCTGGAGCCGTCCAGCAGGAAACGGTCGGCTTT ATTTGCAGTAGTGGCCAAGAAAGAGAGCCCGATGTATTGCTCTCGCCCGT GAAGCCGTCACAGTTCCACATGTCGGAAAACAAGGCGATCACCGGTGGTC CCGAAACGCCCGAAAGCGATAGCGGCAGGAATGGTGAGCACAACGATAGC CGCGCCGCCCCCACTTTGACTCTGCAAGACACTGATCACAAAGGGGATAT CGGCAGCGGCAGTGGCAACCACGCTTCTGTTCCCCGAAACTCAGATGTCG AAATCGATGGCCTCTTCGACGGGCTAAAAATTGAATCGGGAGGTGACCTG GTAAAAGCCAAAAACGAAAAGCAGGAGTCCGAGGGCCGTGAAACTCTGCG AGCTAGCACCCAGGGCCTCAAAAATCGTGTCGAGCTCGAGAGTTTCAAGC GCTTAGATGCGGAGTCCCGAACCGAGACCCTCGAAGTCGAGGTACAGGTC CTGGCGGATCGCTGGAGCTCGGAGATCGCCGCTCGCGAAGCCGCGGAGGC CAACGCGAAGCGCTACATGGACTTGTTCACCGAAGCCAGGGCGGCTTGGC AGCACACTCAGGGCATCGTAGAGAACAAGGAAAAGGAGCTCATCGCCGCG GAACACAAGATCAATAGAAAGACCGGTGACTGGGGTTCTATGCAAAGCCG TCTGGAGGAGGCGAAGAAGACCAAGGAGCTACACCGGCAGCATTCGCTTG TGCTAAAGCAGGCTTTGGAAGGGTCTCTTTCCAAAGAGAGCACGTTCTCC CCCATTTCTTCCGCCGAAACCATCGTCGCACTGCCCTCTCCTGAGAATGA GGACAAAGCTCTTCCAGAAAACATCGACGCGTGTGGGAGCGGTGGAAAGG CCAAAAGTCCATCCGCGCCCTCCAGCAAGGTTGCTGCGGGCCCTGAGGCA GGGGGGATTAGGTATGTACCGTCGTCCCAGCCGAAACTTGAGGAGGAGCG AGAGGCGGCGGCAGAGGCGCGGTTGCAGATGGCGATTACGATTGCGGCAG CGAGGTCCAAAACGGTAACAGCTACATCCCTCGTGCAGAAGAAAGCCCAG TTGAAGCATGTCCAACAGCAGGGACCAATGCAGCAGGGCAATTACGCGTG GCCCTCATCGCCTCGCCGCCAGCGGGCACCCACCTCCAAGGGCACGCCAC TCTCGCCTATGACCGTGTCGTGCGTCCCCCCCACCACTACATCGACAGCC CTCCAGCACCATGCCCATCAGCAGCATGCACGGCGGCAGCAGGACGGCAA TCAGGCAAGACTCTGTCGGGAGCTGGAGAAACCCGTGCCCGCCGCCCAAA AAGGAGATGATGCACAGCTCCCCCTTGATGATCCGTATACCCCTGGGACC ACCCCCACGGCCTTCACCTCCTTTCCGCAGCCTCTCCCGTGTCGCTCCCG CAGTGTCTCGGCGACTAAACAGCCTGAAGTAGGTGAAGGTAACGGAAGGA GCAACAACGGAGGAAACAATGTTGGCTTTGCTTCCGGCTATGCCGGATCG CGGTCAAGGGTGACGATGCGCGTACCGCAACTGCCCCAGAGCTTCTCAGG CCCATCCGAGGAGGGCAATCAGAAGGAGAGGGCTGAGCAATCGAAGGGAC ATCAGCAAGGAAAGCCTACTATATTGGACGCGCTGGATGACATGTGTGTC TCCGATGAAACCCACCACGGCCTCGACGCTCACTCTTCAGCGACCAACCA CAGCAACAAAAGCGGTTTTGGTGAGGAGACAAAAGCGATCTCGGGCGGGA TTTATGGTAACGGCCGTATTGACGGTAGCAACGGTTGCGACGAGGGTCAC ACGGAGGACAACATCGAAAACCCCAGGAAGGCGTGCGGAGTGACGACGCC CATCAGCGGTGACGATGGGTCCCTGGCTGCCATGGAGACGGCAAAATACT CGGGACAAAGCGGTGCTTACGGCGACAGCGATGAGAGGGGGGTTGGTATC GTCAAGCGGGTGGGCGCGTTTCTTGAAACGTTGGAGAGCGCTACGTGCAG GAAGACCATGGTTACGCTCGAGGTTGGCATGGGGTCAGCGGTGCAGGTCA TGAACGAGAGGAAATTTCTTGATCTCCATGACACCAAGGTAGGAACAGCA AAGGGATGTGTACCTGATACCTAGTATGTGCACGGTGTCCCCTTTTAATG AAAACTGCGTTCGAACGTTGGGGTATCTGTAGATCTGGTACCAAACGAAC GGCATGAACGTACCATACAAGCCAAAAAGCACCTTAGTTCCTTCGAAATT TCTGTGAAAGTAAGAGTTCATGGCGGCGGTCAAATGTCAGCAATAGAACA GCCTGCAGGTCTAACGGGACATAAATACTCGCAGATCAGAGCATCGGTTC TAAAATTTATGTAATGCAGGCATTGCAGGTAGTTGCGAAGGTGATTTGGC CGCTCTTGGTCCAACTGGAATTCCAAGGTCCCTAGGTGCCCAGGTGAAAA ACAGTTCCGAGTGTTATTAAAGCACCGAACCTCGGAGACATATATTTTGG ACGGGAAGCATTACATTCAAGCAAGCCGCTACCAAATTGGACAAATGAGA AAAGTTAATCAGAACACATCTTCATTGCCGGTATCGCCGGCGCCGCGTTA GTACTTGAGTGTTACAACTGTCGTATTGTGGCGATTCTGACCCCTACTCG CCCACCAACACACTTTTGCGGTAGAGGTCAGCACCACGGTGTCTTCGTAC AAATGAATTTCGAAGGAAAGTTGGCGACATTCCGTCTACGCGCGAGCACC TCCTGACTTCCCCAGACAGATTCCCCCATGTCTTCCAAGCTCGAGCTGTG TCGGAATGTTTGCGGTGACACAACGATATTCCTGCTCGGTGATCCAAAAA GTGTATTCTCGAAAGCTGTAGAGGTGTTTTCAAGAAGTCACCGTGTCCAC GCTAGGAAGCTCAAGCATTTGAGTGTGAAAGGCTACCAAACACATCGCCG TGTTCTCCTCTCCAGTTTATATCGCATATCACAGCAAACATGTACGAAGT AGGTGTTACCATCTGCACAATTAGTGGTCGAGGGTCAACGCTCCATCACC CCCCCAAGCACTACATGTATCGTAGCACTGAGGAATTCTTCACCGCCGCA CGTAATTTGATGCTTCTTGTTTGAGGTGTCAGCATCGCGAGCGTATTGTT TTCCAATTGAATTGTTCATCAACTTATGGTTGTTTGAACGCTACAAGATT TTCTATTTCATGTGTCATTCTACCACTGCAGTCGACACGACATGAAGTTC GTCGGACTACTTCGAAGTACAGCAGTATAGCTTGTCAAGGACTGACTGTC TCCATGGAATTTTCTTCCTTTTCTTCGTGCAGGAAGGCATTGGCGAACTT CTCGTGGCTTTAGGCGCTACGGCATCCGCATTTTGAAGTGATGGTGCAGT TCACTCAAGCTCACTATGAATTATGGCCACGGTGGATATCCACGGAAGAG AAGGAACATGGGCAGCATCTCTTACAGGAAAACGTTGCCCTTGGTATGTA TGACCCTACTCAGGCTCAAAAATGCAACTTGTTATTTTTTCGTACTGGCG ACGGAAACGCAACTGGAGGAATGCTGACCGCATTTGTTCTGTTAGCAGCC CTTCCGCGTGTTCGGGTTCTTACGTGACAGCCTGTGTATAGTAGCCGTGC GTTATCGCTAGCTTCGCCGGCCCGAGACAATGGGGTGCATGAAAGTGTGC CGAACCCGAGTGATGACCGGTTGGGCCGCAGTACGAATAGAGTAGGGGGT GTAGGGGGGGGTGAATTGAAACGGAAAAGTATGTCGCCGAGTGCAAACAC TACATTTGATCTAATCCGTTCGATGGTGAAAACAGACAGGGCCGAAATCG ATGAAATATGGGTCTACGATATACTTTGAAGTCTATACGTAAGCAGGGAT CACGTCAAGTCGGAGTGCGCGGTTGTTACCCATTGTAGGTGAGATACGGT TGGTGTGGAGGAAAGCGAAGAAACCGTGAGAATTCGAGTGGAAGAACTAT TGGTTGGGGTTGGGCGTTGATGGAATGTAAAACTATGTACGAATGAAATG TAAAGGGAAATTATGTGAATGCTTTGAAATGCAATGAAATGAAAGGAAAG GAAAGGAAATGGGATGAAATGGAATGAAATGGAATGAGATGGAATGAAAT GAAACGGAAACGGAACGCAGCGTGTTCAGTAAAATACTGATGGTGCAAGG TCCTGTCAAATCGAAAATGGGTATTTTTGATTCGTGTGTTGGGTCAGCAC TGGGGACGATACGTCAACCGCAATCAACCGCAAGGATGCCAGTATACTGC GACGACGGCATGGTCACTGGGGTATTGCAAACGAGGGGGGCGAGTCGGAA ATAATTCAAACGCAGCCGGGCACAGCCAATGATAAGATTGGCGAAGGTGG TGGTTGGAGCGGCGTTTAGAATTTTAACCTCCCAAAGCGCGCATGGTTTC CCCAGCGCAACTTTGAATATCGCAGAATCGATAGGGCCGAGATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig136:196571..201966-

>mRNA_P-littoralis_Contig136.37.1 ID=mRNA_P-littoralis_Contig136.37.1|Name=mRNA_P-littoralis_Contig136.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2247bp|location=Sequence derived from alignment at P-littoralis_Contig136:196571..201966- (Pylaiella littoralis U1_48)
ATGGAGGAAACGGCACAGCAACCACAATTTGGTCATCCTGCCGAAGCGGT
AGATGTGTCGTACCAAAAGCCAGCTGGAGCCGTCCAGCAGGAAACGGTCG
GCTTTATTTGCAGTAGTGGCCAAGAAAGAGAGCCCGATGTATTGCTCTCG
CCCGTGAAGCCGTCACAGTTCCACATGTCGGAAAACAAGGCGATCACCGG
TGGTCCCGAAACGCCCGAAAGCGATAGCGGCAGGAATGGTGAGCACAACG
ATAGCCGCGCCGCCCCCACTTTGACTCTGCAAGACACTGATCACAAAGGG
GATATCGGCAGCGGCAGTGGCAACCACGCTTCTGTTCCCCGAAACTCAGA
TGTCGAAATCGATGGCCTCTTCGACGGGCTAAAAATTGAATCGGGAGGTG
ACCTGGTAAAAGCCAAAAACGAAAAGCAGGAGTCCGAGGGCCGTGAAACT
CTGCGAGCTAGCACCCAGGGCCTCAAAAATCGTGTCGAGCTCGAGAGTTT
CAAGCGCTTAGATGCGGAGTCCCGAACCGAGACCCTCGAAGTCGAGGTAC
AGGTCCTGGCGGATCGCTGGAGCTCGGAGATCGCCGCTCGCGAAGCCGCG
GAGGCCAACGCGAAGCGCTACATGGACTTGTTCACCGAAGCCAGGGCGGC
TTGGCAGCACACTCAGGGCATCGTAGAGAACAAGGAAAAGGAGCTCATCG
CCGCGGAACACAAGATCAATAGAAAGACCGGTGACTGGGGTTCTATGCAA
AGCCGTCTGGAGGAGGCGAAGAAGACCAAGGAGCTACACCGGCAGCATTC
GCTTGTGCTAAAGCAGGCTTTGGAAGGGTCTCTTTCCAAAGAGAGCACGT
TCTCCCCCATTTCTTCCGCCGAAACCATCGTCGCACTGCCCTCTCCTGAG
AATGAGGACAAAGCTCTTCCAGAAAACATCGACGCGTGTGGGAGCGGTGG
AAAGGCCAAAAGTCCATCCGCGCCCTCCAGCAAGGTTGCTGCGGGCCCTG
AGGCAGGGGGGATTAGGTATGTACCGTCGTCCCAGCCGAAACTTGAGGAG
GAGCGAGAGGCGGCGGCAGAGGCGCGGTTGCAGATGGCGATTACGATTGC
GGCAGCGAGGTCCAAAACGGTAACAGCTACATCCCTCGTGCAGAAGAAAG
CCCAGTTGAAGCATGTCCAACAGCAGGGACCAATGCAGCAGGGCAATTAC
GCGTGGCCCTCATCGCCTCGCCGCCAGCGGGCACCCACCTCCAAGGGCAC
GCCACTCTCGCCTATGACCGTGTCGTGCGTCCCCCCCACCACTACATCGA
CAGCCCTCCAGCACCATGCCCATCAGCAGCATGCACGGCGGCAGCAGGAC
GGCAATCAGGCAAGACTCTGTCGGGAGCTGGAGAAACCCGTGCCCGCCGC
CCAAAAAGGAGATGATGCACAGCTCCCCCTTGATGATCCGTATACCCCTG
GGACCACCCCCACGGCCTTCACCTCCTTTCCGCAGCCTCTCCCGTGTCGC
TCCCGCAGTGTCTCGGCGACTAAACAGCCTGAAGTAGGTGAAGGTAACGG
AAGGAGCAACAACGGAGGAAACAATGTTGGCTTTGCTTCCGGCTATGCCG
GATCGCGGTCAAGGGTGACGATGCGCGTACCGCAACTGCCCCAGAGCTTC
TCAGGCCCATCCGAGGAGGGCAATCAGAAGGAGAGGGCTGAGCAATCGAA
GGGACATCAGCAAGGAAAGCCTACTATATTGGACGCGCTGGATGACATGT
GTGTCTCCGATGAAACCCACCACGGCCTCGACGCTCACTCTTCAGCGACC
AACCACAGCAACAAAAGCGGTTTTGGTGAGGAGACAAAAGCGATCTCGGG
CGGGATTTATGGTAACGGCCGTATTGACGGTAGCAACGGTTGCGACGAGG
GTCACACGGAGGACAACATCGAAAACCCCAGGAAGGCGTGCGGAGTGACG
ACGCCCATCAGCGGTGACGATGGGTCCCTGGCTGCCATGGAGACGGCAAA
ATACTCGGGACAAAGCGGTGCTTACGGCGACAGCGATGAGAGGGGGGTTG
GTATCGTCAAGCGGGTGGGCGCGTTTCTTGAAACGTTGGAGAGCGCTACG
TGCAGGAAGACCATGGTTACGCTCGAGGTTGGCATGGGGTCAGCGGTGCA
GGTCATGAACGAGAGGAAATTTCTTGATCTCCATGACACCAAGGAAGGCA
TTGGCGAACTTCTCGTGGCTTTAGGCGCTACGGCATCCGCATTTTGA
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