mRNA_P-littoralis_Contig1003.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1003.21.1
Unique NamemRNA_P-littoralis_Contig1003.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.710e-24
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITVGRESNKADEVMTLMDKAYHLDTYRGVYEDDRIRVLLPVQGE 273
            NGNF V K  + YG RV L FG +G  T ++CTC    R++IP CD+I VGR  +K+DEVM+ +D AYHLDTYR +Y + R  V LPV  E
Sbjct:  229 NGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRFEVHLPVPDE 319
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BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.470e-22
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITVGRESNKADEVMTLMDKAYHLDTYRGVYEDDRIRVLLPVQGE 273
            NGNF V K  + YG RV L FG +G  T ++CTC     ++IP  D++ VGR  +K+DEVM+ +D AYHLDTYR +Y D R  V LPV  E
Sbjct:  151 NGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRFEVQLPVPDE 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJU4_9PHAE4.710e-2452.75MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5KEB7_9PHAE1.470e-2250.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1003contigP-littoralis_Contig1003:82286..83449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.479136-CDS-P-littoralis_Contig1003:82287..824031680789345.479136-CDS-P-littoralis_Contig1003:82287..82403Pylaiella littoralis U1_48CDSP-littoralis_Contig1003 82288..82403 -
1680789345.4911067-CDS-P-littoralis_Contig1003:83292..834491680789345.4911067-CDS-P-littoralis_Contig1003:83292..83449Pylaiella littoralis U1_48CDSP-littoralis_Contig1003 83293..83449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1003.21.1prot_P-littoralis_Contig1003.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1003 82288..83449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1003.21.1

>prot_P-littoralis_Contig1003.21.1 ID=prot_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITV
GRESNKADEVMTLMDKAYHLDTYRGVYEDDRIRVLLPVQGE
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mRNA from alignment at P-littoralis_Contig1003:82286..83449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1003.21.1 ID=mRNA_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig1003:82286..83449- (Pylaiella littoralis U1_48)
AACGGCAATTTTAATGTCAGCAAAGACACAACCACCTACGGAGCCCGAGT
GCATCTCAACTTCGGGGCAAACGGTGCGAAGACTGAGGTCTCGTGCACGT
GCGCTATGTTCGCCCGGTGGAGGATACCTTCCTGCGACGTCATCACTGTC
GGGCGAGGTGAGCACCTCTGTCTCCCCCGTTTCTCCCCAGTGTATGCGTT
GTTCGTACGGCGCTGTTGTATGCGCGGGCTTTCGGTCCCCGAAGCACCTC
ACCCGTCACGATGCCTTTCGTTCAAAAACCAAATGAGAAGCACATGGTCA
GACTGTATGGGGAGGCCTGAGAGCGTGCGATTCGCGATGCATTCAACCGC
AACCGCAAGAGTGAGAAATCATGAACGTTCGATGAAAAAGACACAAGTAA
GAGAATGCAGCCCTTTGGCGTGCGGTTGTCCTTAATGCTCTCCCAACAGG
TCTATCTGTCCTAAAAATAGAATTTGGCAAAGTTGCACGAGGCCACAAGA
GAGAAAGTGATCAGATCAAGCTTGCAAGGCGCAGTCGGTGACCTTTACGA
CACACTCGTTAATGCGCGCACGGTGTATGTTAGTAGGAGTCGGAATGACT
GTTGGGTCATGGTGCAGGACTGACTGCACTCCCTCCGCGATAATAGCATT
TGGCCTCGAAATCTCTTTTGGGCCACGGGTGAACCGCCATTTGTCTCTCA
CTCGGCTTGACCTCTACAGCCTCAGCGGTATATTGACATGGGATCCTTGT
GTCCCCGCACACATGTCCTAGAGCCGCCCCCCCCCCCCCGTAGTGTGCAC
ACGTTGCGTCGGGCGGGTAAGGGGCGCCCACGCCCCAACGACATGTAACA
GCTATCGCTGCTACACAGCTCACATCTCGACGTATTGAACTTGACGGGTG
GACAGTAACAACAACTAGGGCCACCGTTTTTGCTCGCTGTCCCGCGGCAA
TGGATGATGTACCTCGTTATTGAGCGATTACCGTACCCTTTCTGTTCACT
CTTGTTCTGTTTTTCTATGTTTTCATGCCTTTTGTCGGCCATGCAGAGTC
AAACAAGGCGGACGAGGTCATGACACTCATGGACAAGGCATACCACCTTG
ACACCTACCGGGGCGTGTACGAGGACGACAGAATCCGGGTCCTGCTGCCA
GTGCAGGGAGAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1003:82286..83449-

>mRNA_P-littoralis_Contig1003.21.1 ID=mRNA_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1003:82286..83449- (Pylaiella littoralis U1_48)
AACGGCAATTTTAATGTCAGCAAAGACACAACCACCTACGGAGCCCGAGT
GCATCTCAACTTCGGGGCAAACGGTGCGAAGACTGAGGTCTCGTGCACGT
GCGCTATGTTCGCCCGGTGGAGGATACCTTCCTGCGACGTCATCACTGTC
GGGCGAGAGTCAAACAAGGCGGACGAGGTCATGACACTCATGGACAAGGC
ATACCACCTTGACACCTACCGGGGCGTGTACGAGGACGACAGAATCCGGG
TCCTGCTGCCAGTGCAGGGAGAG
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