mRNA_P-littoralis_Contig136.25.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.25.2
Unique NamemRNA_P-littoralis_Contig136.25.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.770e-55
Identity = 104/148 (70.27%), Postives = 125/148 (84.46%), Query Frame = 1
Query:  724 RHRSNGSSGGSVAAPPRLHLAPVPPILPRRPLSK-GNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNK 1164
            ++ +NG+      A  RL +   PP LP R +SK G+KRE+LADIA+RIPVELMR+YFNYPLR +AEAMHISVTTLKRLCRRHGVKRWPHRQISG+NR L DLE+QHDAA+G E +A+V EELR+LHR+REVIIE+AF+S+DESTRNK
Sbjct:   20 KNSNNGTEDSRGPAVRRLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDESTRNK 167          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 8.730e-51
Identity = 105/147 (71.43%), Postives = 126/147 (85.71%), Query Frame = 1
Query:  727 HRSNGSSGGSVAAPPRLHLAPVPPILPRRPLSK-GNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNK 1164
            +R+NG+      A  RL +   PP LP R +SK G+KRE+LADIA+RIPVELMR+YFNYPLR +AEAMHISVTTLKRLCRRHGVKRWPHRQISG+NRAL DLE+QHDAA+G E +A+V EELR+LHR+REVIIE+AF+S+DESTR+K
Sbjct:   22 NRNNGTEDRRGPALGRLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDESTRDK 168          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 8.390e-47
Identity = 101/140 (72.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query:  766 PPRLHLAPVPPILPRRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNKSFDDEPA 1185
            PPRL +   PP +PRR  SKGNKRE LADIA+RIPV LMR YFNYPLR+AAEAM ISVTTLKRLCRRHGVKRWPHRQI GINR L DLE+QHD AKG E V SV ++LR+L+R+R+VIIE AF+S+DES  N S D  PA
Sbjct:   73 PPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDE-VDSVADQLRQLYRRRDVIIELAFESDDESISNGSDDAPPA 211          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 6.060e-46
Identity = 98/129 (75.97%), Postives = 109/129 (84.50%), Query Frame = 1
Query:  766 PPRLHLAPVPPILPRRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDES 1152
            P RL +   PP +PRR  SKGNKRE LADIA+RIPVELMR YFNYPLR+AAEAM ISVTTLKRLCRRHGVKRWPHRQI GINR L DLE+QHD AKG E V SV E+LR+LHR+R+VIIE AF+S+DES
Sbjct:   85 PHRLTIPHEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDE-VDSVAEQLRQLHRRRDVIIELAFESDDES 212          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.300e-35
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  772 RLHLAPVPPILPRRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAA--KGGEAVA---SVVEELRELHRKREVIIEKAFDS 1140
            RL +   PP++PRRP SKGNKRE L DIA RIPV +MR YFNYPLR+AAEAM+ISVTTLKRLCRRHGVKRWPHRQISGINRA+  LE Q D A  +  E       V E+++EL R+R+V+IE AF+S
Sbjct:  990 RLFIPETPPVVPRRPPSKGNKRETLGDIALRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGRRNSEITIRNNQVSEQMQELLRRRQVMIEHAFES 1117          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: D8LNV2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV2_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.010e-31
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 1
Query:  772 RLHLAPVPPILPRRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAA 1050
            RL +   PP++PRRP SKGNKRE L DIA RIPV +MR YFNYPLR+AAEAM+ISVTTLKRLCRRHGVKRWPHRQISGINRA+  LE Q D A
Sbjct:  764 RLFIPETPPVVPRRPPSKGNKRETLGDIAHRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQA 856          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.660e-25
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  724 RHRSNGSSGGSVAAPPRLHLAPVPPILPRRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDEST 1155
            R + NG    S A+   L+L   P  L R+P  KG +RE L DIA R+PVE++  YFN+ LR+AA+AM ISVT+LKRLCRRHGVKRWPHRQ+SG+NR +  LE +   +   +    +  +L  L+ +R+ +I+ AF S+D S+
Sbjct:    7 RPKRNGVLQQSNASRTPLNLPKTPRKLARQPPLKGTRRETLQDIARRVPVEVLLPYFNFSLRTAADAMCISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHLEERQATSNDPD----IARQLARLYCRRDEVIDLAFTSDDNSS 146          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.580e-16
Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  829 NKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNKSF 1170
            +KR+   ++A+R+PV ++ ++++ PL  AA  + +S+T LK+LCR++G+KRWPHRQ+S +N++L  LE +   A   +A A++  +   L  KRE+II+ A    D    N  F
Sbjct:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVF 114          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.080e-14
Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  817 LSKGN--KREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAK-GGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNKSF 1170
            L +G+  KR+   D+A R+P+E++  +++ PL  AA+ +++S+T LK+LCR +GVKRWPHRQ+S +++    LE +  A + GG+   S+V +L +  ++R+VII+ A    D S  N  F
Sbjct:  457 LRRGSSLKRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKARRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDVSVLNSIF 577          
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.660e-13
Identity = 44/114 (38.60%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  832 KREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRLCRRHGVKRWPHRQISGINRALVDLESQHDAAK-GGEAVASVVEELRELHRKREVIIEKAFDSEDESTRNKSF 1170
            KR+   D+A R+P+E++  +++ PL  AA+ +++S+T LK+LCR +GVKRWPHRQ+S +++    LE +    + GG+   S+V +L +  ++R+VII+ A    D S  N  F
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKTRRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDASVLNSIF 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.25.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN15_ECTSI1.770e-5570.27Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KFL8_9PHAE8.730e-5171.43RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LEC2_ECTSI8.390e-4772.14Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K716_9PHAE6.060e-4675.97RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLN8_9PHAE5.300e-3565.63RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNV2_ECTSI1.010e-3176.34Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5L9C1_9PHAE2.660e-2547.22RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T4_9STRA1.580e-1637.72RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5KE17_9PHAE7.080e-1438.84RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FS12_ECTSI1.660e-1338.60Putative NIN-like transcription factor n=1 Tax=Ect... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:155394..164109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTZ5
PFAMsRWP-RK
Model size4286
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.03e-10
EggNOG OGs2E5A6@1|root,2SC46@2759|Eukaryota
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-25_001170.1
DescriptionRWP-RK domain
Cds size2136
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.1866283-UTR-P-littoralis_Contig136:155393..1554851680789628.1866283-UTR-P-littoralis_Contig136:155393..155485Pylaiella littoralis U1_48UTRP-littoralis_Contig136 155394..155485 +
1680789628.2279031-UTR-P-littoralis_Contig136:162051..1641091680789628.2279031-UTR-P-littoralis_Contig136:162051..164109Pylaiella littoralis U1_48UTRP-littoralis_Contig136 162052..164109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789628.1978004-CDS-P-littoralis_Contig136:156050..1563141680789628.1978004-CDS-P-littoralis_Contig136:156050..156314Pylaiella littoralis U1_48CDSP-littoralis_Contig136 156051..156314 +
1680789628.2087266-CDS-P-littoralis_Contig136:157787..1579911680789628.2087266-CDS-P-littoralis_Contig136:157787..157991Pylaiella littoralis U1_48CDSP-littoralis_Contig136 157788..157991 +
1680789628.2191653-CDS-P-littoralis_Contig136:160383..1620511680789628.2191653-CDS-P-littoralis_Contig136:160383..162051Pylaiella littoralis U1_48CDSP-littoralis_Contig136 160384..162051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.25.2prot_P-littoralis_Contig136.25.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 156051..162051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.25.2

>prot_P-littoralis_Contig136.25.2 ID=prot_P-littoralis_Contig136.25.2|Name=mRNA_P-littoralis_Contig136.25.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=712bp
MNTARTPAAAKIRSSRNNITICRHRSNGSSGGSVAAPPRLHLAPVPPILP
RRPLSKGNKREILADIAERIPVELMRQYFNYPLRSAAEAMHISVTTLKRL
CRRHGVKRWPHRQISGINRALVDLESQHDAAKGGEAVASVVEELRELHRK
REVIIEKAFDSEDESTRNKSFDDEPAPPPPPTPSIPASATRNRNTSTKNG
SSRSGEKSYDCGGGGGGSSCTSSSEDGPSGGHRSSGSSSDTGSSASSSCS
SPRSRSASSATAFAPAWSVSSSYGGGSLPAGAWWNSRAPSRGGGHPSAPP
SVVGGGSSTSGNSSGGGGGGGGKSGHCRCCGGGNKRARRVSVSSSGSGRT
AAAAMATATATLMGISSHHRRKRKSAKSATTSALPCKTKPENVPSVVEDS
STRGGGATPAAGLLATATSFVSSNLLADHGGNMFGLGSQDSQQMKDLAAV
GDLLFGPDDAAAAAAASLTRARNLLEAAVSAPPAAATGATSRTTTRPPPR
LRASAAANDGGGGGGGGGGDCNVECRRGCRGSGDCDGSGDGGDGGTCTCA
ESQRAVPSSVDDSFGGNVYSGSGGGLELQQVGPRSDDLAILGNLLFGPEE
AAAAAAGTISQNLRKAHSLNPVAFSASPNESSLSPLPWGTTSLACVPLCP
PGVFSEDTAFYGEDSISSSSFEHGFSAGLASAAAAAAAAAAASNWGGGEV
GEGDRSGLGPM*
back to top

mRNA from alignment at P-littoralis_Contig136:155394..164109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.25.2 ID=mRNA_P-littoralis_Contig136.25.2|Name=mRNA_P-littoralis_Contig136.25.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8716bp|location=Sequence derived from alignment at P-littoralis_Contig136:155394..164109+ (Pylaiella littoralis U1_48)
CACATCTTTTCACACACACCACACACACACACACCACACACACCACGGAA GAGCGTTCGGGACGAAGCATAACCTTGACGCTACGGTAGCAGGTGAGTGC GTCGGCAGGGTCGCCGACTGCACCAGTGGTGCGGTCTTGATGAAGCCGGA GTGGCTGGACGTTTTTGCTTTGTGGCTGCCTTGTCTTGTTGGGATGGATT TATCGAAATCGATCCACATGTTATCATCATCAGGGGATAATTCAGGCATC ACACACACACGGCGGTGTCGAAGCATCCATCTGCCTCTCCTACCGATGGT TGGCTAGGCTGTGAGATGGACCACCGTGTACTGGTGCAGCTCCTCGGCAG CGGTGCTGTGTTGTAGTTGGTGCGCGTTGGTCGACAGCAGGCTGTCTGTG TATCTTCCGTGTAAAAAGGGAAACAGAGTTCAGCAGCAGTAGAACAGACG AACAGGAAAGAGGGCGAAGTTCAGGCAGGGAGTTCATTTCAGTCAGGATG CTTGATTTTTTCCCCGTCTGGCAATCTGTCTGGCATATGTACCCAGCAAG ACAACACAACAAGCACAACACGACACACAGCACAGCACAGTGCGCTAGCT AGCATCTGATTGAGTGTTTTCGGCCTTTCGCTCCGCTCGCTCCCTTGGGT CGAGCAGATGAACACCGCTCGAACCCCGGCAGCAGCCAAAATCCGTAGTT CGCGCAACAATATCACCATTTGTCGGCATCGGAGCAACGGCAGCAGCGGC GGAAGTGTGGCGGCGCCGCCGAGGCTGCATCTAGCTCCAGTGCCACCCAT ACTCCCTCGCAGACCTCTGAGCAAGGGGAACAAGAGGGAGATCCTCGCCG ACATCGCCGAGCGCATCCCGGTGGAGCTGATGAGGCAGTACTTCAATTAT CCTCTCCGATCCGCTGCTGAGGTGTGTGTCTGGGAGTGACTGGTTCGTCT TTTTTGTACACCGATGTTGTTGACTTATTTTTCAATTCTTGGAGAAAATC AATCCACGTTTATTATGCTCCTATACCTTACAAGATAAACACCTGAGAAA CACTCCCGAGCATACATATGATACCGTATCCTACATCACAGCATTTCCGT TTGCGCATGCAAAGGGAGACGCTTGCGACCCGAATCCGTGTTCAAGTACA CGGGTGTTGGTGTGTGCCGCTGTTGTTTGTTTCTGTCTCCACGACGTGCA CAATAATGGCAACGCCGGGGCCTCTTACAGAGACAGCTGTCCGGGAAACT TTTCCGATTAATTTTTCGCACTACATATTGTAGGAAATACTCCGTATGAT CTTGTCATGTGGTGTACTAATATGATGTACTGGTACGACCTATGACACAA TGTTATCTCCTGCATAAATAGACGGAAATTCGATAGACTGAACAACACCC AAGAGCCAGTTTTTTTGTGCTGCATTTTTTCATCGGATCTACTCGTTTTT ATGCTCGTATGTATAGGAACCAGTTTTTGTATGCGTACGCGCACTCCTCG AGTGCATCATTCGTCGCCCAACCCCCGTCGTGGAGCAATTCGAGAGGGTG GGTAAGCACCACACGTAAATTCTTCCTGATACACGTAGTACATCGAATGG TTCATTGTTGCTTCAGAGTAAGTACGAAGTACGAAGCAGCAGAGCATGTG ATTAGGCAACAACGTTGACTGGTATCATATCATATACCTGGTATATCACG TGTGTGACGTTTTCAACCAGATGAAACCGCGTCATTGACGTTCGAGGTAT GATACATAAAAGAAGGAAACTACATTTACCCGCTGTTTTTTGCTTCGAGG TATGTAACTGCTGTGACACGTATTATAAAACCATATCGTACAACGAAGAG TACATTTTACTATAAATGACGGCCCGGCGCCGCCAACGCCACTCCGCCCC CCAACGGCAGTAGCTCAGTTTGTTGGCTGGGTGACGGTGATTGCTTGGAT TGTTTCATGGTTGTTTTGTGTGTTGTTTTTTGTTTTCATGTTGTTTTTGG ACTGTTGATTACGATGCACTTCAAAGTAGTGAGGTGCACTTCTGTCTTGA CTCCTGTGCTGTGCGGCCTCAGGTGGTCCGCCCAATTTTTACCGAAAGCC GACTACTTGTACAAGTAGCGTTCAGAAGAGATGTGATGTCAACACGGAAT AATGCACACACCAAGAGCACACCCTTTTTCAAACGTACCCTGTATGCACG ACATTTTCAGTGAGTACTGCTGCCCCCCACCCCCGCTCTCCGTCCCTGCT CTCGAAATGATCTATCACGGCGGTTTCCTACATGATCAAGACATCTCTAG GGTTGACTCCCTCACCCACGCACCTACACCCAGCTCTTCAAAACGTCTGC TGCTGTCTAATATCGTTTTTTTTTACCCGCGGTCGTCCCCACAGGCGATG CATATCTCGGTGACAACGCTGAAGCGTCTGTGCAGGAGACACGGAGTGAA GCGCTGGCCGCACCGGCAGATCAGCGGCATCAACAGGGCGCTCGTTGATT TAGAGTCGCAGCACGACGCGGCGAAGGGAGGGGAGGCGGTCGCTTCGGTC GTGGAGGAGCTCCGCGAGCTGCACAGAAAGCGAGAAGTGATCATTGAGGT GCGTGCTTGCGCCTTGGTGTCCGTGTCTGTCTGTGTCTGTCTTTGTCTAT GTCGTGTCCATGTGTGTGTGTGTCAATGTCTCTGTGTTTTGAAGTAAAAG GGTACATAATTTGGAGTTAATTAAAGATGACCTTTAAAATCACGAACAAA ACCTTGGAATTCTTAGTCGTTCCGATGAGAGTTATGTGATTGCCTCTCTC GGGTCTCTATATATTTTATATTTTAAAATAGAGTTTTAGAACGAAGTACG GAGTACTTCGTACTTCGAAGTATATTATATGAAAATACATAACCAATTTT TCCTTTCTGAACCTTTAAAATCATGAACAAAATCCCGGAATTATTCGACA GGGCGAAACAATAAAGGACGTATCGAACAAAAATCACTTAGGGCTGATTT AGAAAAAAACGAAAAAGAAGGAAGGAAATCTGTATTTTATTCTAACCTTA AGACGAAAAGGACACACTTTTTGGGCCCGGATCGGGTTGAACTGTGTCTG TGTCTGAGAAGGGGGACACCACGTGACCCACGAGATCGTGTGCACGCATT ACTACAAAATATAAGGCAAAAACAGCAGCAAAGAAAAGGATGAAAAAAGT ATAGGGAAAACGACACAATAGGGCGCACCCTGGTCATTTCGCGACACAGT ATGGTGCACACTTTTTTCTAGTGTGAAATGAGCTGAGCTGATTGGTCGAC GCACGTTTTCACCCTGCTGAGTCTGAAAATGGGCTGGGTGCACCCCGCGG GGCTACTTTTCTACAGAACTATATCCTGATTTTGGAGAATTATCCTGTTG TGTGGGAAAATGAGACCCTTCCACTGGCCATTCCTCCCGCAGGAACCAAT TTCCTTTATCACCGAAGGCATCCAAAACGTAGATCTTCCTGTGTGCAATG GCATGATGGTCACAAACCAGCCGGCAGGACGGGCCCACATCGACTCTTCA CACAGCAACAACAAGGGAACCAATACGCAGAGCACCCGAAACACGGAGCC GATATACGTTGGCAAGCAGAGAGCAAAACGATGTTCAAATAGAGACACAC AAAGGAGGCACATGAAGGGCGCTGCCAGAGAGTGATGGCAGTCAGTCTCG GTCTCTGTCAAAGTTCGCGCAGTCTCTCTCGCGACTGGTGAAAAGTCGAC CCTTGGCGATAGACCCAGCAAGATGAACGGACAAGCCCGCCGCTGCAGCC CTCGCCCCGCTCGCTGCCCCTTGCGGTCTCCTTTTTTTGGTGTTCGGTCT TCGTGTTTTCAATGACAGCGGTCTCAAGGACAAGACGTACAGTAGTGCTA CAGCAGCAGGAGTATGGAAGGGTTGGAGGCAGGTCCGTCCTGCCTGTTCT CACTGAATGTTTCGCGCAGGAAGATCTGCATTTTGGGTTCCTTTGGCGGA AGCGGAAATTGATTTCTGTGCGGGAGGAATGGCCGGTGGAAGGTCTCATT TTCCGACAAATCAGGGTACTTGTCCAAAATCAGGGTGTAGTTATATAGAA AAGTAGCCCCCGCGGGGTGCACCCAGCCCATTTTTCGACTCAGCAGGGTG AAAACGTGCGTCGACCAATCAGCGCAGCTCGTTTCATCCTGGAAAAAAGT GTGCACCATGCTGTGTCGCGAAATGATCAGGGTGCACCCTGTTGTGTCGT TTCCCCAACAAATATACCAGGTACTGTATATATCTTGTGTTGACCTTCCC TCATGTGTTGCCCCGGTTGGCGCACCCCATTTATCATACGACACCGAAAG TTGTAGAATACTGTCGACTTGCGTCCGGAGTACATTGGATGACAACACAC ACTCAGCCTAATATGTTTTGGTGTTTTTTGGGGGACGAAATGCAATAACA GCAGTACACACATTGCGTCGTCTGACGACAGGCAATTTCTGCGTAGAACG GTCAGTAAGTTTTGCAATATCAGTACGGGCTCTTCGCAAGAGACATTTTC GGGAGAGATCCCGCCTGAGAAATTAGGCCCAGCGCGAGTGCTACCCTTTT AACCCTGTATGAGAGCCTGCTCTGTGTTGGGGAAAAGTCAAGGGTTTTGA GCTTTGCGACAAAACCTGCTGTAGATTGCACCACGACAAACAAAAGGTGT CCTCACTTGTGTGTGGAAGCCCCTCCGGCGTGGCCCGTCAATTTTCGTTG CTCGTTCAGTTAAATGATGTTGGCACAAAATAAATCAGATCAGCGAACCA AACCGCACAAGCTACTGCATTCTGTCCGTGCTTTGTGCTTGCAATTCTTT TCCATTCTGTCAGTTGATTTAGTCTCCTCCCTACCCCAGTGCACACCGGA AAAATGGATTGTTTTGTGCTCGTGACGTCTGTTGGCCAAGCAAACCACCC CCCACCCACCCCGCCATCGTTCTCACTCTCCCAATAACAGAAAGCATTTG ACAGCGAAGACGAGTCGACCCGCAACAAGAGCTTCGACGACGAGCCGGCA CCGCCGCCGCCGCCTACGCCGTCTATACCGGCGTCCGCAACCCGCAACCG TAACACATCCACCAAGAACGGCAGCAGTAGAAGCGGTGAGAAAAGCTACG ACTGCGGCGGCGGCGGCGGGGGAAGCAGCTGCACCAGCTCCTCGGAGGAC GGGCCGTCGGGAGGTCACCGCAGCAGCGGCTCCTCGTCGGACACAGGGTC TTCGGCGTCCTCCTCCTGTTCCTCCCCTCGGTCTCGCTCCGCGTCTTCTG CCACCGCTTTTGCGCCAGCGTGGTCCGTCTCCTCCTCCTACGGAGGAGGA AGCTTGCCTGCAGGAGCGTGGTGGAACAGCCGTGCACCCTCCCGAGGCGG CGGCCATCCGTCTGCGCCACCCTCCGTAGTTGGCGGCGGCAGCAGCACCA GTGGGAACAGCAGCGGCGGCGGCGGTGGCGGGGGCGGCAAAAGCGGACAC TGCCGTTGCTGCGGCGGCGGCAACAAGCGTGCCCGTCGGGTTAGCGTAAG TAGTTCCGGGTCCGGAAGAACTGCGGCGGCGGCGATGGCGACGGCGACGG CGACGCTCATGGGTATTTCCTCCCACCACCGACGAAAGAGAAAGAGCGCC AAGTCCGCCACTACCTCGGCACTACCCTGCAAGACAAAACCTGAAAACGT TCCTTCCGTCGTCGAAGACAGCAGCACCAGGGGTGGCGGGGCCACGCCTG CTGCGGGGTTGTTGGCAACGGCAACCTCGTTCGTTAGCAGCAACCTCCTC GCCGACCATGGCGGCAACATGTTCGGACTAGGATCGCAAGATAGCCAGCA GATGAAGGATCTCGCGGCCGTGGGAGACCTGCTGTTCGGCCCGGACGATG CGGCAGCGGCTGCCGCTGCGTCACTCACACGGGCCCGAAACCTGCTTGAG GCGGCGGTATCGGCCCCACCAGCGGCGGCAACGGGCGCGACCTCCCGCAC CACAACCCGGCCACCGCCCAGACTACGTGCATCTGCTGCTGCCAACGACG GTGGGGGTGGCGGTGGTGGTGGTGGTGGTGATTGTAATGTCGAATGTCGT CGTGGTTGCCGTGGGAGTGGTGACTGTGACGGTAGTGGTGACGGTGGTGA TGGTGGAACCTGTACCTGTGCGGAGTCGCAGCGAGCGGTCCCGTCTTCTG TAGACGATTCGTTCGGCGGGAACGTTTATAGTGGCAGCGGCGGCGGACTG GAACTGCAACAGGTTGGCCCGAGGTCGGACGACCTCGCAATTCTGGGCAA CCTGCTATTCGGTCCCGAGGAGGCGGCAGCGGCAGCCGCGGGAACGATTT CCCAAAATTTGCGCAAGGCGCACAGTCTCAACCCGGTCGCTTTCTCCGCT TCTCCAAACGAATCCTCATTGTCGCCACTGCCGTGGGGAACTACGTCCCT TGCGTGCGTGCCGCTATGTCCACCGGGAGTGTTTTCTGAGGACACCGCCT TTTACGGCGAAGACTCGATTTCTTCTTCGTCGTTTGAGCATGGGTTTTCG GCGGGACTTGCATCCGCGGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGTC GAACTGGGGCGGCGGCGAGGTCGGAGAGGGAGACAGGAGTGGGCTGGGGC CCATGTAGGCGCTTCGTAGGGTCGGACCCTGTAGGTGTTCGGTGGGTCTC GGCGTCCAGTGGACGGGAATAATAAAGGGCAGCGGGGCTATTCCGTTTGA AAAGGGGTTGCTCCACCGAGTGGACGCCGTCGACGTCTTGAAAAAAAATC GGTCGTTGTGTTACGGAAGAATCATCCTTTTGAAGATTTACCTTTGAGAG TAGAGTTTTTGCGGTGCTCGTTGCGCTTCCCTCCTTACCTCCCGCATTTT AATTTTGTCGAGTTTCTCATCTTCAATTTTCGTTACATTTTTTTTTTTTT ACCGACTCGAATCGGGGGGAAGATTGACCTCGTTTTCTCCCTACAAATGT TGATTACTTCGGTAGAACTTTTGACGGGCGCGGTCGGTGATTTCAATCCC CTCTCACGCGGACCGTTCCTTTCTTAATTACAAAAGGTTCAGAGAGGGAC ACGGGACAGCAGGGGCGGTCAGTTTTTTACAATTGTTTAAATCGAAAGGA CGAGGTAGGGAAAATTGGAATTCGAAGTTGATGGAAGAATTTTTGGGGAT CGGAAAATGATTGCCCAGCTAAAAAAGGGACGGAGTGGCCGAACCGTTTC GTGAAATATCATTTCCGTTCCTTGCATTGATTTTGTTCAAGTCCGCGATT TTTATCTTTTGTGGCGCTCGAATCGAAGTAATATATAATACCAGTACCGA ATTGCCTTTTTGTTTTTGACCTATTTTGTGTTTCATGTAGGCTCCTGTTG TTTTGCCTTAGGTCTGTGCACTTGTAAGTCTCTTGTTGATCATAAACCTG CCGGGATGTGGGTTTCGTGTACGTTCGAAACAGACAACAGCAATTCGGAT GGAGTTTAATTTGTTGCTTGAGTAGTTTCGATTCAAGTAGAGGAGCGTTT ATGGATCTCTTCGTACAGTCCCCTAGAAAATATTTCGAGATTTTCCGTAC GTGTATTCATTTCATATGGTACGAGGAACCTCTCAGCAGCTCTGAGTTCG TCTGCTTGAGTAGCGGACGTACGTGGTGCGTGCCAACCTAGCAGGCTATT TTCGTTCTCACCGCCCTCGGGTCCCTTACAACGTGGGAGGCACCGATGCT AAAAGTGGCGTGTTTGTTGATATCTGTCATTCGGCGCTGGTTGGCACCCT GGGCTGAGTGGGGGCAAGCGGACCTGGTTGTTTCGTTCCGGAGGCGAGCG GCCCAGGGTGTGTAGGGGGGCATGTGCTTTGCATTTACAAAAGGGAAGGA TGGAAAAACCTAGAACTTCCGAATCGGCAATTCTCCCACTGCAATGGAAT ATTTTCATCACCGCGCGTACCTGCTCACGAGCAACAGCATTCTGCTTCTC CTCGAGCACAAGCGAGGTGGTGGTACGCGATTTGATCTTTGGAGTGTAGA ATTACGATTTTTAAACCACAAGTATTGAATTCAGTCACGCGCGGGGTGCA GACGCGTTAATATTGTATGTTCAATAGCAAGCAGCAGGAGTCAGTGTTTG TGTGGTCTCGTTGTCGGGCGCGGGCTGTAGAGCCCCAAGTACACACACAA GAGTCAATCGTACGCTCCCTTGCGATTCGCGAAAACGTTTATGCTGCGTG CGTCCGTGAATACTGCAGCTGGGTTGACGCCGCAACGTTCAGATAATGTG TCCTTGGCACGAATTCTTGTGCTGGTGGTGGGGGGTTGAGAATATGGGGG TGGGACGGTGCATTTGTTTACAAAATAAGTAGAATACATAACAAGTTTAT GGTTCGAAAGCAAAAAGAAGGCAGCGGTGTTTATAATACATTGGGCTGTT GTCTGTGTTTGCCTTGTCTAGAATGTTGTGGGTTTGAGTGCGCAGCGGGG TGGTGGGGGTTGTACTTTGCCGTCCTGAGTTGGTTGGTGAAGGTCAAGTC GATGCGTTATGTTCGACGGTAAGGACTCTGTGTGTCGATCACATCCCATT GGATTTGATGCATGTCGTGTTCGGTGTTAAAAAGTCTGGGGCTGGCCCGG CGTCCGTGATGCGTTAGGCGTTAAAATTATTTACTTATGTAAGATGATAA TACATACTACCAGAAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig136:155394..164109+

>mRNA_P-littoralis_Contig136.25.2 ID=mRNA_P-littoralis_Contig136.25.2|Name=mRNA_P-littoralis_Contig136.25.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2136bp|location=Sequence derived from alignment at P-littoralis_Contig136:155394..164109+ (Pylaiella littoralis U1_48)
ATGAACACCGCTCGAACCCCGGCAGCAGCCAAAATCCGTAGTTCGCGCAA
CAATATCACCATTTGTCGGCATCGGAGCAACGGCAGCAGCGGCGGAAGTG
TGGCGGCGCCGCCGAGGCTGCATCTAGCTCCAGTGCCACCCATACTCCCT
CGCAGACCTCTGAGCAAGGGGAACAAGAGGGAGATCCTCGCCGACATCGC
CGAGCGCATCCCGGTGGAGCTGATGAGGCAGTACTTCAATTATCCTCTCC
GATCCGCTGCTGAGGCGATGCATATCTCGGTGACAACGCTGAAGCGTCTG
TGCAGGAGACACGGAGTGAAGCGCTGGCCGCACCGGCAGATCAGCGGCAT
CAACAGGGCGCTCGTTGATTTAGAGTCGCAGCACGACGCGGCGAAGGGAG
GGGAGGCGGTCGCTTCGGTCGTGGAGGAGCTCCGCGAGCTGCACAGAAAG
CGAGAAGTGATCATTGAGAAAGCATTTGACAGCGAAGACGAGTCGACCCG
CAACAAGAGCTTCGACGACGAGCCGGCACCGCCGCCGCCGCCTACGCCGT
CTATACCGGCGTCCGCAACCCGCAACCGTAACACATCCACCAAGAACGGC
AGCAGTAGAAGCGGTGAGAAAAGCTACGACTGCGGCGGCGGCGGCGGGGG
AAGCAGCTGCACCAGCTCCTCGGAGGACGGGCCGTCGGGAGGTCACCGCA
GCAGCGGCTCCTCGTCGGACACAGGGTCTTCGGCGTCCTCCTCCTGTTCC
TCCCCTCGGTCTCGCTCCGCGTCTTCTGCCACCGCTTTTGCGCCAGCGTG
GTCCGTCTCCTCCTCCTACGGAGGAGGAAGCTTGCCTGCAGGAGCGTGGT
GGAACAGCCGTGCACCCTCCCGAGGCGGCGGCCATCCGTCTGCGCCACCC
TCCGTAGTTGGCGGCGGCAGCAGCACCAGTGGGAACAGCAGCGGCGGCGG
CGGTGGCGGGGGCGGCAAAAGCGGACACTGCCGTTGCTGCGGCGGCGGCA
ACAAGCGTGCCCGTCGGGTTAGCGTAAGTAGTTCCGGGTCCGGAAGAACT
GCGGCGGCGGCGATGGCGACGGCGACGGCGACGCTCATGGGTATTTCCTC
CCACCACCGACGAAAGAGAAAGAGCGCCAAGTCCGCCACTACCTCGGCAC
TACCCTGCAAGACAAAACCTGAAAACGTTCCTTCCGTCGTCGAAGACAGC
AGCACCAGGGGTGGCGGGGCCACGCCTGCTGCGGGGTTGTTGGCAACGGC
AACCTCGTTCGTTAGCAGCAACCTCCTCGCCGACCATGGCGGCAACATGT
TCGGACTAGGATCGCAAGATAGCCAGCAGATGAAGGATCTCGCGGCCGTG
GGAGACCTGCTGTTCGGCCCGGACGATGCGGCAGCGGCTGCCGCTGCGTC
ACTCACACGGGCCCGAAACCTGCTTGAGGCGGCGGTATCGGCCCCACCAG
CGGCGGCAACGGGCGCGACCTCCCGCACCACAACCCGGCCACCGCCCAGA
CTACGTGCATCTGCTGCTGCCAACGACGGTGGGGGTGGCGGTGGTGGTGG
TGGTGGTGATTGTAATGTCGAATGTCGTCGTGGTTGCCGTGGGAGTGGTG
ACTGTGACGGTAGTGGTGACGGTGGTGATGGTGGAACCTGTACCTGTGCG
GAGTCGCAGCGAGCGGTCCCGTCTTCTGTAGACGATTCGTTCGGCGGGAA
CGTTTATAGTGGCAGCGGCGGCGGACTGGAACTGCAACAGGTTGGCCCGA
GGTCGGACGACCTCGCAATTCTGGGCAACCTGCTATTCGGTCCCGAGGAG
GCGGCAGCGGCAGCCGCGGGAACGATTTCCCAAAATTTGCGCAAGGCGCA
CAGTCTCAACCCGGTCGCTTTCTCCGCTTCTCCAAACGAATCCTCATTGT
CGCCACTGCCGTGGGGAACTACGTCCCTTGCGTGCGTGCCGCTATGTCCA
CCGGGAGTGTTTTCTGAGGACACCGCCTTTTACGGCGAAGACTCGATTTC
TTCTTCGTCGTTTGAGCATGGGTTTTCGGCGGGACTTGCATCCGCGGCGG
CGGCGGCGGCGGCGGCTGCGGCGGCGTCGAACTGGGGCGGCGGCGAGGTC
GGAGAGGGAGACAGGAGTGGGCTGGGGCCCATGTAG
back to top