mRNA_P-littoralis_Contig1003.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1003.17.1
Unique NamemRNA_P-littoralis_Contig1003.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: D7FRA5_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA5_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 5.510e-31
Identity = 65/110 (59.09%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   13 VASSSDQPLRVKQRAIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKEVGVIYLCITASMTYVFFRRHDERRKKTEF 342
            +ASSS+QP   KQRA+IVGGGPAGALMALYLSQ+ RGF+VDLFE   E+ I GPTVRSWN+ +F+RG+DAL+AGG D+QKE G   L +  S+      RH ++ K ++F
Sbjct:    1 MASSSNQPAGSKQRAVIVGGGPAGALMALYLSQD-RGFKVDLFEAFDENIIGGPTVRSWNVVLFDRGSDALKAGGVDLQKEAGERLLTLAGSL------RHHKKEKTSKF 103          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A846BVX3_9CYAN (FAD-dependent monooxygenase (Fragment) n=1 Tax=Symploca sp. SIO1B1 TaxID=2607763 RepID=A0A846BVX3_9CYAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.120e-8
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   46 KQRAIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKEVGVI 267
            K+R +IVG GP G L+ALYL+Q    ++V ++ER K +  S  + RS+NI + ERG  AL+  G ++     VI
Sbjct:   15 KKRVVIVGAGPTGTLIALYLAQ--MDWQVSVYERRKAEPESSSSRRSYNIVLNERGLKALQQAGVELPSAKQVI 86          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A6P0S6X8_9CYAN (FAD-dependent monooxygenase n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0S6X8_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 4.560e-8
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   46 KQRAIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKEVGVI 267
            K+R ++VGGGP G L+ALYL+Q    ++V ++ER + +  S  + RS+NI + ERG  AL+  G D+     VI
Sbjct:   15 KKRVVVVGGGPTGTLIALYLAQ--MDWQVSVYERRRAEPESSSSRRSYNIVLNERGLKALQQAGVDLPSAKQVI 86          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: B0C034_ACAM1 (FAD_binding_3 domain-containing protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0C034_ACAM1)

HSP 1 Score: 59.3 bits (142), Expect = 1.570e-7
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   13 VASSSDQPLRVKQR--AIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKEVGVIYLCITASMTY 297
            V S S++PL  ++   A++VGGGP G L+ALYL+Q G  + V ++E+   D  +    RS+NI +  RG  ALE  G  +  +  V   CIT ++ +
Sbjct:    2 VNSPSEKPLSSEKNRTAVVVGGGPTGTLIALYLAQAG--WHVSVYEQRSADAKASSNRRSFNIVLNRRGLKALEDAGVQLPPDKQV---CITGNIRH 93          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A7Y4Y5F8_LYSSP (FAD-dependent monooxygenase n=1 Tax=Lysobacter sp. TaxID=72226 RepID=A0A7Y4Y5F8_LYSSP)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-6
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   49 QRAIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGP-TVRSWNIAVFERGTDAL-EAGGFDMQKEVGVI 267
            QR  IVGGG AG+L+AL LS+  RG+EVD+FER  + R +G  + RS N+ + +RG  AL E G  DM   + V+
Sbjct:    2 QRVAIVGGGLAGSLLALALSE--RGYEVDVFERRGDPRAAGAESGRSINLGLSKRGIQALTEVGLIDMVMPMTVV 74          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: UPI001BAE8264 (FAD-dependent monooxygenase n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001BAE8264)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-6
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   34 PLRVKQRAIIVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKE 255
            P   K++A++VGGGP G L+ALYL+Q    + V ++ER   D  +    RS+NI +  RG  ALE  G  +  E
Sbjct:   11 PSDKKRKAVVVGGGPTGTLIALYLAQAD--WNVSVYERRSVDTKASSNRRSFNIVLNRRGLKALEDAGVQLPPE 82          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: B8LL94_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LL94_PICSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.810e-6
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   52 RAIIVGGGPAGALMALYLSQEGRGFEVDLFEREK---EDRISGPTVRSWNIAVFERGTDALEAGGFD-----MQKEVG 261
            +A++VG GPAG +MALYL +  RGF+V +FER     E ++ G   RS+ I + +RG  A+EA G +     M+++VG
Sbjct:   70 KAVVVGAGPAGCVMALYLLR--RGFQVHVFERRSMIDESKLKGDP-RSYPILMTKRGIKAIEAAGLELPSSLMKRQVG 144          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A7W7CQ46_9ACTN (Kynurenine 3-monooxygenase n=7 Tax=Actinoplanes TaxID=1865 RepID=A0A7W7CQ46_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 8.540e-6
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   61 IVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTV-RSWNIAVFERGTDALEAGGFDMQ 249
            IVG G  G+L+A YL +  RG+ VDL+ER  + R++G    RS N+A+ ERG DAL   G D Q
Sbjct:    6 IVGAGLCGSLLACYLGR--RGYTVDLYERRPDPRVTGAERGRSINLALSERGLDALRRIGLDEQ 67          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A5C7R1W8_9GAMM (Kynurenine 3-monooxygenase n=1 Tax=Thermomonas sp. TaxID=1971895 RepID=A0A5C7R1W8_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 8.590e-6
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   61 IVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTV-RSWNIAVFERGTDALEAGGFD 243
            IVGGG AGAL+A+ L+Q  RG+ VD+FER  + R+ G    RS N+A+ ERG  AL   G D
Sbjct:   10 IVGGGLAGALLAILLAQ--RGWSVDVFERRGDPRVHGYAGGRSINLALAERGLHALRQAGAD 69          
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Match: A0A4R3N555_9GAMM (Kynurenine 3-monooxygenase n=1 Tax=Thermomonas haemolytica TaxID=141949 RepID=A0A4R3N555_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 8.640e-6
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   61 IVGGGPAGALMALYLSQEGRGFEVDLFEREKEDRISGPTV-RSWNIAVFERGTDALEAGGFD 243
            IVGGG AGAL+A+ L+Q  RG+ VD++ER  + RI+G    RS N+A+ ERG  AL   G D
Sbjct:   19 IVGGGLAGALLAILLAQ--RGWSVDVYERRGDPRITGYAGGRSINLALAERGLHALRQAGAD 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1003.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FRA5_ECTSI5.510e-3159.09Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
A0A846BVX3_9CYAN3.120e-841.89FAD-dependent monooxygenase (Fragment) n=1 Tax=Sym... [more]
A0A6P0S6X8_9CYAN4.560e-841.89FAD-dependent monooxygenase n=4 Tax=unclassified S... [more]
B0C034_ACAM11.570e-737.11FAD_binding_3 domain-containing protein n=1 Tax=Ac... [more]
A0A7Y4Y5F8_LYSSP1.360e-648.00FAD-dependent monooxygenase n=1 Tax=Lysobacter sp.... [more]
UPI001BAE82641.360e-640.54FAD-dependent monooxygenase n=2 Tax=Acaryochloris ... [more]
B8LL94_PICSI4.810e-642.31Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A7W7CQ46_9ACTN8.540e-648.44Kynurenine 3-monooxygenase n=7 Tax=Actinoplanes Ta... [more]
A0A5C7R1W8_9GAMM8.590e-651.61Kynurenine 3-monooxygenase n=1 Tax=Thermomonas sp.... [more]
A0A4R3N555_9GAMM8.640e-651.61Kynurenine 3-monooxygenase n=1 Tax=Thermomonas hae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1003contigP-littoralis_Contig1003:59579..60007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRA5
PFAMsFAD_binding_3,NAD_binding_8
Model size429
Max annot lvl2759|Eukaryota
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.04e-32
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
EC1.14.13.9
DescriptionFAD binding
Cds size429
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.4450493-CDS-P-littoralis_Contig1003:59578..600071680789345.4450493-CDS-P-littoralis_Contig1003:59578..60007Pylaiella littoralis U1_48CDSP-littoralis_Contig1003 59579..60007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1003.17.1prot_P-littoralis_Contig1003.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1003 59579..60007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1003.17.1

>prot_P-littoralis_Contig1003.17.1 ID=prot_P-littoralis_Contig1003.17.1|Name=mRNA_P-littoralis_Contig1003.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MAAAVASSSDQPLRVKQRAIIVGGGPAGALMALYLSQEGRGFEVDLFERE
KEDRISGPTVRSWNIAVFERGTDALEAGGFDMQKEVGVIYLCITASMTYV
FFRRHDERRKKTEFRHQEDDGHMFGSPSGYHNHVHSAGDPVH*
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mRNA from alignment at P-littoralis_Contig1003:59579..60007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1003.17.1 ID=mRNA_P-littoralis_Contig1003.17.1|Name=mRNA_P-littoralis_Contig1003.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig1003:59579..60007+ (Pylaiella littoralis U1_48)
ATGGCTGCTGCCGTAGCTTCATCGTCCGATCAGCCGCTGCGGGTAAAACA GCGAGCTATCATCGTCGGGGGAGGGCCTGCGGGCGCTCTGATGGCGCTGT ATCTCTCGCAGGAAGGCCGTGGTTTTGAGGTCGATCTGTTCGAGAGAGAG AAGGAGGACCGCATTTCGGGTCCCACTGTACGTTCGTGGAACATTGCCGT TTTTGAGCGAGGGACCGACGCCCTGGAAGCCGGAGGCTTTGACATGCAGA AGGAGGTGGGGGTCATCTACCTGTGTATAACGGCAAGCATGACTTACGTT TTTTTCAGAAGACACGACGAGAGACGCAAAAAGACCGAGTTTCGACACCA GGAGGATGACGGACACATGTTTGGTTCGCCGTCGGGGTATCATAATCATG TTCATTCAGCAGGAGACCCGGTTCACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1003:59579..60007+

>mRNA_P-littoralis_Contig1003.17.1 ID=mRNA_P-littoralis_Contig1003.17.1|Name=mRNA_P-littoralis_Contig1003.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig1003:59579..60007+ (Pylaiella littoralis U1_48)
ATGGCTGCTGCCGTAGCTTCATCGTCCGATCAGCCGCTGCGGGTAAAACA
GCGAGCTATCATCGTCGGGGGAGGGCCTGCGGGCGCTCTGATGGCGCTGT
ATCTCTCGCAGGAAGGCCGTGGTTTTGAGGTCGATCTGTTCGAGAGAGAG
AAGGAGGACCGCATTTCGGGTCCCACTGTACGTTCGTGGAACATTGCCGT
TTTTGAGCGAGGGACCGACGCCCTGGAAGCCGGAGGCTTTGACATGCAGA
AGGAGGTGGGGGTCATCTACCTGTGTATAACGGCAAGCATGACTTACGTT
TTTTTCAGAAGACACGACGAGAGACGCAAAAAGACCGAGTTTCGACACCA
GGAGGATGACGGACACATGTTTGGTTCGCCGTCGGGGTATCATAATCATG
TTCATTCAGCAGGAGACCCGGTTCACTGA
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