mRNA_P-littoralis_Contig1358.9.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1358.9.2
Unique NamemRNA_P-littoralis_Contig1358.9.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1358.9.2 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.960e-31
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  317 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 625
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADW 194
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BLAST of mRNA_P-littoralis_Contig1358.9.2 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.250e-30
Identity = 64/114 (56.14%), Postives = 74/114 (64.91%), Query Frame = 2 
Query:  287 EAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 625
            E   + ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW
Sbjct:    4 EHIARCIQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGW 114
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BLAST of mRNA_P-littoralis_Contig1358.9.2 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.750e-21
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 2 
Query:  344 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 625
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGW 269
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BLAST of mRNA_P-littoralis_Contig1358.9.2 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.620e-9
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  619 WLGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIK-LEYPSQKYLIAKPRARV 843
            W G RL  WIN P VLE GFK   EE ALHYL CIINHVEE      V ER      +    PS++Y I++PR +V
Sbjct:  111 WEG-RLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQV 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1358.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.960e-3160.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE8.250e-3056.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE7.750e-2155.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE9.620e-951.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1358contigP-littoralis_Contig1358:14946..16789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size843
Hectar predicted targeting categoryother localisation
Exons5
Cds size639
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1358.9.2prot_P-littoralis_Contig1358.9.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1358 15477..16779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.955199-UTR-P-littoralis_Contig1358:14945..150471680789625.955199-UTR-P-littoralis_Contig1358:14945..15047Pylaiella littoralis U1_48UTRP-littoralis_Contig1358 14946..15047 -
1680789625.9667227-UTR-P-littoralis_Contig1358:15384..154761680789625.9667227-UTR-P-littoralis_Contig1358:15384..15476Pylaiella littoralis U1_48UTRP-littoralis_Contig1358 15385..15476 -
1680789626.0151694-UTR-P-littoralis_Contig1358:16779..167891680789626.0151694-UTR-P-littoralis_Contig1358:16779..16789Pylaiella littoralis U1_48UTRP-littoralis_Contig1358 16780..16789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.978257-CDS-P-littoralis_Contig1358:15476..157941680789625.978257-CDS-P-littoralis_Contig1358:15476..15794Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 15477..15794 -
1680789625.989684-CDS-P-littoralis_Contig1358:16005..161241680789625.989684-CDS-P-littoralis_Contig1358:16005..16124Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 16006..16124 -
1680789625.9982753-CDS-P-littoralis_Contig1358:16330..164331680789625.9982753-CDS-P-littoralis_Contig1358:16330..16433Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 16331..16433 -
1680789626.0068123-CDS-P-littoralis_Contig1358:16680..167791680789626.0068123-CDS-P-littoralis_Contig1358:16680..16779Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 16681..16779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1358.9.2

>prot_P-littoralis_Contig1358.9.2 ID=prot_P-littoralis_Contig1358.9.2|Name=mRNA_P-littoralis_Contig1358.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MEVTALRDALGQHDEEHDSGVSPSPTRMVRLFGAAGEENQAADEEEEEEE
EDSDDAENQRKKQPVSASRGEESEEDNDCMSVQDSDDEEETDEAAVQYMR
GAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRL
DWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLT
RFAGWGRDSKPG*
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mRNA from alignment at P-littoralis_Contig1358:14946..16789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1358.9.2 ID=mRNA_P-littoralis_Contig1358.9.2|Name=mRNA_P-littoralis_Contig1358.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1844bp|location=Sequence derived from alignment at P-littoralis_Contig1358:14946..16789- (Pylaiella littoralis U1_48)
GAGGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATG
ACGAAGAACATGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGG
TTGTTCGGGGTAAGGTTTTGTTTTGAAAATGTGGGTGTAAAAATTATTGA
GTTGCAGTCCCCGAGACAATGCTATGTAAGCCAAGGCATGGCCCAACTTG
GCGGCCTGACTTTTCGCGTGGTCTCGCCGCACCCCACCTCTCGCCACCTC
TCGCTGCCCAGCAGCTTTATTTTTTGGCCATCGATACCCTTGATCATTAC
TGCCATTGCGCCGTTCTGAACGCTTTTTGCCTGATGTCTCGCACACTTGA
TGGCAGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGA
GGAGGAGGAGGACAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTG
TGTCAGCAAGTATGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGG
TGACAAAAAAACGGCGTGTTCTTTTTCCTTCTTTCGTTATCTAGGAACCA
TCGCTTTTCTCTCTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACTC
GCCTGACGAGTGTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAAT
GCTGATTGGAGCAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGC
ATGAGCGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGT
CCAATACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGC
ATATTGTTGCCTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCCT
TTTGGTGTGACCTCGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTGT
TTCATCACCATCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCT
TTTATCTTTTGTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGC
TGGCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACG
GTCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGG
GACGCCCTCTTCAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGA
GGTCAAAGGTCTTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGG
GCTATGTGGACGGACTCGCCGCCCTGGAACACCGTAAGGCTGATACTAAG
ACGGCGACAGCGTTCACCTTGACCCGTTTTGCTGGCTGGGGGAGAGACTC
CAAACCTGGATAAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGC
GCGGGAGGAGATTGCATTGCACTACCTATGCTGCATCATCAATCACGTGG
AGGAGGTGGGTTGATGCGGTGGTCAATAGGAAGTGAGGAAGACATACCAG
ACGAAATTTGCCCAAGGATTACAATCTCCTTTCCGCAGCCGTAGTTGACT
AAGACATAAACTCCATCCTCCCTCGGTACGTTACAGCGCTGTGTATTTTG
TATCGTCGGGGTACGCTATCTTTCTGATTCCTTGTGTGTTGGAGCAATCA
TCGCTCCGAGCGCTTAGTTTTGGAGACAACCATTCTGATTTTCTCTTCTA
TAGCTTGGACTCGACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCG
CTCCTCTCCTCGAACCGCTCCCCGTCCCCCCCGTTGCTGCAGGAGTTGTA
CAACTTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGT
ACCCGAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1358:14946..16789-

>mRNA_P-littoralis_Contig1358.9.2 ID=mRNA_P-littoralis_Contig1358.9.2|Name=mRNA_P-littoralis_Contig1358.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig1358:14946..16789- (Pylaiella littoralis U1_48)
ATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAGAACA
TGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGGTTGTTCGGGG
CGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGAGGAGGAG
GAGGACAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGC
AAGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAGCGTGCAGG
ATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCGT
GGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCTGGCCCA
GAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTG
CCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTC
GACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAAC
GCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCC
TGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCACCTTGACC
CGTTTTGCTGGCTGGGGGAGAGACTCCAAACCTGGATAA
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