mRNA_P-littoralis_Contig1358.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1358.6.1
Unique NamemRNA_P-littoralis_Contig1358.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 8.040e-49
Identity = 85/120 (70.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:   31 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 390
            MR GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.350e-48
Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    4 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 390
            D+ E+R+GHM  GLGSH NPT  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.270e-39
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1
Query:    1 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 303
            +D VE+RFGH R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 7.630e-39
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    4 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 303
            D+VE+R+ HMR  LGS+ NPTA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   57 DIVEHRYAHMRQSLGSNSNPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 9.740e-37
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 351
            QDV+E+ FGHMR GLGSHRNPTA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  659 QDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.740e-36
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1
Query:   31 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 303
            MR  LGSH NP A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.800e-35
Identity = 72/128 (56.25%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    7 VVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 390
            V +   G+  +G GS R              DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   72 VAQKPDGYESEGTGSTR--------------DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.280e-33
Identity = 73/130 (56.15%), Postives = 90/130 (69.23%), Query Frame = 1
Query:    1 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 390
            Q ++E+RF  +R GLG+ RNPTA QAKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE        PA+ G +  +VNPY
Sbjct:  237 QIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 4.610e-28
Identity = 68/121 (56.20%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   28 HMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 390
            H+R GLG+ RNPTA QAKER+ RGDLNR LHG SRAN NRNAR G D+  S YR RIML +T+   +  +R  S N+P AVL PRYIS +   A PVVE      S PA+ G +  +VNPY
Sbjct:  918 HIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVE-----TSVPAAQGSST-IVNPY 1032          
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.790e-21
Identity = 58/101 (57.43%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 303
            QD+VE+R+GHM   LGSH NPTA QAKERAA+ DL RSLHG SRANH   AR+G+D+IASG R RIMLP      S   R   ++  A  L  RY+S D P
Sbjct:  144 QDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP------SDRRRAVCYD--AGALEERYLSCDVP 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1358.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K630_9PHAE8.040e-4970.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE2.350e-4868.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE1.270e-3969.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE7.630e-3968.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE9.740e-3761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE4.740e-3671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE3.800e-3556.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE4.280e-3356.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI4.610e-2856.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTX6_9PHAE9.790e-2157.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1358contigP-littoralis_Contig1358:13093..13547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.8569272-UTR-P-littoralis_Contig1358:13092..131221680789625.8569272-UTR-P-littoralis_Contig1358:13092..13122Pylaiella littoralis U1_48UTRP-littoralis_Contig1358 13093..13122 +
1680789625.8743267-UTR-P-littoralis_Contig1358:13491..135471680789625.8743267-UTR-P-littoralis_Contig1358:13491..13547Pylaiella littoralis U1_48UTRP-littoralis_Contig1358 13492..13547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.8658507-CDS-P-littoralis_Contig1358:13122..134911680789625.8658507-CDS-P-littoralis_Contig1358:13122..13491Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 13123..13491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1358.6.1prot_P-littoralis_Contig1358.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1358 13123..13491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1358.6.1

>prot_P-littoralis_Contig1358.6.1 ID=prot_P-littoralis_Contig1358.6.1|Name=mRNA_P-littoralis_Contig1358.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIAS
GYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGS
ASQESTPASAGQTIEVVNPYTR*
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mRNA from alignment at P-littoralis_Contig1358:13093..13547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1358.6.1 ID=mRNA_P-littoralis_Contig1358.6.1|Name=mRNA_P-littoralis_Contig1358.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=455bp|location=Sequence derived from alignment at P-littoralis_Contig1358:13093..13547+ (Pylaiella littoralis U1_48)
CAGGATGTCGTGGAGAACCGGTTCGGGCACATGCGCGACGGCCTTGGGTC GCACAGAAACCCGACGGCTACGCAAGCGAAGGAGAGGGCAGCACGGGGGG ACCTGAATCGTAGTCTGCACGGGCGTTCCCGCGCAAACCACAATCGGAAT GCGCGGAGAGGACAGGACTACATCGCGTCCGGATACCGGGCACGGATCAT GCTCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTCCT GGAACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACAGA CCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACGCC CGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTAAT AGGTTTAGAAGGGGTAGGGTGACAATGGAGAGAGAGGACGAGAAGATCGC AAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1358:13093..13547+

>mRNA_P-littoralis_Contig1358.6.1 ID=mRNA_P-littoralis_Contig1358.6.1|Name=mRNA_P-littoralis_Contig1358.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig1358:13093..13547+ (Pylaiella littoralis U1_48)
ATGCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCGAA
GGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCGTTCCC
GCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGCGTCC
GGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCTGC
TACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCCGC
GGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGGGTAGT
GCATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGAGGTCGT
CAACCCATACACTCGTTAA
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