mRNA_P-littoralis_Contig1358.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1358.3.1
Unique NamemRNA_P-littoralis_Contig1358.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.840e-19
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENG 177
            +YG LAA QDAD  +LMG L +D +HLNKNG S+APNG G TGLVD+TTFFNPI+   G
Sbjct:  518 KYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEG 576
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.730e-19
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENG 177
            + G LAA QD D A+LMG LA+D +HLNKNG S+APNG G TGLVD+TTFFNPI+   G
Sbjct:  376 KNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEG 434
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.750e-19
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENG 177
            +YG LAA QDAD  +LMG L +D +HLNKNG S+APNG G TGLVD+T FFNPI+   G
Sbjct:  609 KYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEG 667
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.980e-18
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENG 177
            +YG LAA QDAD  +LMG L +D +HLNK+G S+ PNG G TGLVD+TTFFNPI+   G
Sbjct:  476 KYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEG 534
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.860e-15
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEEE 186
            +YG LAA QDAD A+L G L++D  HL+KNG  +AP   G TGLVD+ TFFNP++    +E+
Sbjct:  195 KYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDED 256
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BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.040e-15
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEEE 186
            +YG LAA QDAD A+L G L++D  HL+KNGL +AP    LTGLVD+ TFFNP++    +E+
Sbjct:  136 KYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDED 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1358.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZI2_ECTSI1.840e-1966.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE8.730e-1966.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE8.750e-1964.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I2_ECTSI2.980e-1862.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM8_ECTSI3.860e-1553.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R1_ECTSI5.040e-1554.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1358contigP-littoralis_Contig1358:9847..10032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size188
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.7498012-CDS-P-littoralis_Contig1358:9846..100321680789625.7498012-CDS-P-littoralis_Contig1358:9846..10032Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 9847..10032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1358.3.1prot_P-littoralis_Contig1358.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1358 9847..10032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1358.3.1

>prot_P-littoralis_Contig1358.3.1 ID=prot_P-littoralis_Contig1358.3.1|Name=mRNA_P-littoralis_Contig1358.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTF
FNPIFAENGEEE
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mRNA from alignment at P-littoralis_Contig1358:9847..10032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1358.3.1 ID=mRNA_P-littoralis_Contig1358.3.1|Name=mRNA_P-littoralis_Contig1358.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1358:9847..10032+ (Pylaiella littoralis U1_48)
AGGTATGGGGACCTCGCCGCCGTGCAAGACGCGGATGCGGCCGAACTCAT
GGGTTCTTTGGCATTTGACTGTGTCCACCTCAACAAGAACGGGCTCAGCT
ACGCACCGAACGGAGCGGGGTTGACGGGCCTTGTGGACGACACCACGTTC
TTCAATCCAATCTTCGCGGAGAACGGGGAGGAGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1358:9847..10032+

>mRNA_P-littoralis_Contig1358.3.1 ID=mRNA_P-littoralis_Contig1358.3.1|Name=mRNA_P-littoralis_Contig1358.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1358:9847..10032+ (Pylaiella littoralis U1_48)
AGGTATGGGGACCTCGCCGCCGTGCAAGACGCGGATGCGGCCGAACTCAT
GGGTTCTTTGGCATTTGACTGTGTCCACCTCAACAAGAACGGGCTCAGCT
ACGCACCGAACGGAGCGGGGTTGACGGGCCTTGTGGACGACACCACGTTC
TTCAATCCAATCTTCGCGGAGAACGGGGAGGAGGAA
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