mRNA_P-littoralis_Contig1355.5.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1355.5.3
Unique NamemRNA_P-littoralis_Contig1355.5.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1355.5.3 vs. uniprot
Match: D8LP13_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP13_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.290e-34
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:  241 RGGNFDHGESIVPPEGKTLTPKQLQEVAAVVSERQADVVILLEEEILRYNEAVDVHGYKHREWARLEVERKERLSEKCHQSRLDHLKLDSLAGL 522
            RGG+FDHGE IV PEGKT++ KQLQ++  V+S+RQA+VVILLEEE LRYN+A+ V+ Y HREW RLEVERKERLS  CHQSRLDHL LDSLA L
Sbjct: 1136 RGGDFDHGEPIVLPEGKTMSSKQLQQITTVISQRQAEVVILLEEETLRYNDAMGVYEYNHREWERLEVERKERLSVTCHQSRLDHLNLDSLAAL 1229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1355.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LP13_ECTSI1.290e-3473.40Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1355contigP-littoralis_Contig1355:24945..26702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LP13
Preferred nameVAC8
PFAMsArm
Model size532
Max annot lvl2759|Eukaryota
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009607,GO:0009987,GO:0016020,GO:0016043,GO:0016050,GO:0016236,GO:0016237,GO:0022406,GO:0022607,GO:0030447,GO:0030448,GO:0031090,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034727,GO:0036180,GO:0040007,GO:0042144,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044085,GO:0044182,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0048284,GO:0048308,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0061024,GO:0061025,GO:0061919,GO:0070727,GO:0070925,GO:0071255,GO:0071561,GO:0071562,GO:0071563,GO:0071840,GO:0072665,GO:0097576,GO:0098588,GO:0098805,GO:0098852,GO:0140056
Exons4
Evalue2.11e-35
EggNOG OGsKOG4224@1|root,KOG4224@2759|Eukaryota
Descriptionnucleus-vacuole junction assembly
Cds size531
COG categoryS
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.297666-CDS-P-littoralis_Contig1355:24944..250921680789625.297666-CDS-P-littoralis_Contig1355:24944..25092Pylaiella littoralis U1_48CDSP-littoralis_Contig1355 24945..25092 -
1680789625.3085349-CDS-P-littoralis_Contig1355:25489..256301680789625.3085349-CDS-P-littoralis_Contig1355:25489..25630Pylaiella littoralis U1_48CDSP-littoralis_Contig1355 25490..25630 -
1680789625.359782-CDS-P-littoralis_Contig1355:26118..262191680789625.359782-CDS-P-littoralis_Contig1355:26118..26219Pylaiella littoralis U1_48CDSP-littoralis_Contig1355 26119..26219 -
1680789625.4631708-CDS-P-littoralis_Contig1355:26561..267021680789625.4631708-CDS-P-littoralis_Contig1355:26561..26702Pylaiella littoralis U1_48CDSP-littoralis_Contig1355 26562..26702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1355.5.3prot_P-littoralis_Contig1355.5.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1355 24945..26702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1355.5.3

>prot_P-littoralis_Contig1355.5.3 ID=prot_P-littoralis_Contig1355.5.3|Name=mRNA_P-littoralis_Contig1355.5.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
WKQLIEGEEISLAEFASDVTRQQSHMGKMAMEIRGLRVPLLEPQPPPPPT
LNPGGMKPPTLVPDVEKMRQDEVDTLKDRIRGGNFDHGESIVPPEGKTLT
PKQLQEVAAVVSERQADVVILLEEEILRYNEAVDVHGYKHREWARLEVER
KERLSEKCHQSRLDHLKLDSLAGLIK*
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mRNA from alignment at P-littoralis_Contig1355:24945..26702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1355.5.3 ID=mRNA_P-littoralis_Contig1355.5.3|Name=mRNA_P-littoralis_Contig1355.5.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1758bp|location=Sequence derived from alignment at P-littoralis_Contig1355:24945..26702- (Pylaiella littoralis U1_48)
TGGAAGCAGTTGATCGAAGGGGAGGAGATATCGCTAGCGGAGTTTGCGTC
CGACGTTACCCGACAGCAGTCCCACATGGGCAAGATGGCCATGGAGATCC
GGGGACTAAGGGTGCCCTTGCTCGAGCCGCAGCCGCCGCCCGTGAGCTAA
TGAAACCGTGTAGCCACTTTGTGCCCACCTTACTCAGCAGACTTGTCCGT
GGGCTCCCAGATCAGTCGCTGCCTTCGAGCTAAAAATAAGAATGGTTTAC
AGCTCTACCAGTTGGGTGTAGACTGTAATATATAGTCCTGTGGGCGATAA
ATAGGCTACCAGTTCCCTCCTCAACAACAATTGTAGGACGACCTTTTGTT
AATTTCCTCTTGCCCTCCACTCCTGTGCGCATGAACGGTTGTCGGATCGG
ACGGGTCCTTTCATCTCTACCCGTTTCGGTCGCGCTGCAATCGTTTGTGG
TTCCATCGCCAACTCATTATACTGGGGGGAAAGCCACCAACCCTTAACCC
GGGAGGGATGAAACCGCCGACGCTAGTCCCTGATGTCGAGAAGATGCGGC
AGGATGAAGTGGATACTTTGAAAGACAGAATACGGTGAGTGGATACGACG
TATAAGTATGTTTGTATACGAAGGACATGTATAGATGGCTCACTGGTAGC
TCAAAAGGCACAACACTGACCGAGGGGGTCGGCTGGATAGCAGCACTGTG
AAAAAAGGATCGGACGATAGACGAATTGGCGAATCGGAGGGCCTCCACAC
CTGCTAACTACTTTGGGTAGCGTGCGTGTCCCGAACGTCTAACCACACAC
GAAAACGCCGTTGCCTGCACACGTCGTATGCTGTGTGAGTCAACGACATT
CTTCACGCGAAACAAACTTCGTCCACCTTCACTCTCATTTTATACAAACC
TGACGACCAACGACCCTCCGCACGCGCCCCGCCGGGCCCGTCTCATTTTC
GCGCGGAAAGGATATAAAGCCACAACCTTGTGTGTGTTATCTGTAAAATT
GCCCGAGTGAGAGATTAAAACGCGTTAGATATTGCGGGAATCAACAACCC
TCTTTGTTGAACCACATACCAGAGGCGGGAATTTTGATCACGGCGAATCA
ATCGTGCCCCCAGAGGGAAAGACGCTAACTCCGAAACAGCTGCAAGAGGT
TGCTGCCGTGGTCAGCGAGCGGCAAGCGGATGTGGTCATTTTGCTCGAGG
AAGAAATCCTGAGGTATGATACACATAAGGAGCAGCGTCAAAGCTAAAAC
AACAAAAATAATGGCGACGTTTTTAGTACTCCGAAGTAGGTTTTTATTGT
GCTTAGGCGAATAACACGTTACCTTAAGGTGCGTAAGGTTTCGGTTTCTG
GTTTCATTTATCTGTCCGTGTAGGCCGCATCGTGCAATATTTCGTACCTT
CTTTTTGATCATGCATAAGATGGATTTTTCGTTCTGCAACGTGTTGTTGC
GCGCAAACCGTCCGTTCTAGCATCGATGTGTACACGGAAGAAGCCGGCTT
GGTTCGGTTCGGCTCGGCTCGGCAAACCGAGAAACCCATCATTCGAACGG
TCGAACACTGCTGTGCACCTAGAAAACCCTGAACCTCATGCGTGTTCACT
ATCCATCCAGGTACAACGAGGCCGTCGATGTTCACGGGTACAAGCACCGT
GAGTGGGCGAGGCTGGAGGTGGAGCGGAAAGAGCGGCTGTCGGAGAAGTG
CCACCAGTCGAGACTGGACCACCTAAAACTCGACTCCCTGGCCGGATTGA
TCAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1355:24945..26702-

>mRNA_P-littoralis_Contig1355.5.3 ID=mRNA_P-littoralis_Contig1355.5.3|Name=mRNA_P-littoralis_Contig1355.5.3|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig1355:24945..26702- (Pylaiella littoralis U1_48)
TGGAAGCAGTTGATCGAAGGGGAGGAGATATCGCTAGCGGAGTTTGCGTC
CGACGTTACCCGACAGCAGTCCCACATGGGCAAGATGGCCATGGAGATCC
GGGGACTAAGGGTGCCCTTGCTCGAGCCGCAGCCGCCGCCCCCACCAACC
CTTAACCCGGGAGGGATGAAACCGCCGACGCTAGTCCCTGATGTCGAGAA
GATGCGGCAGGATGAAGTGGATACTTTGAAAGACAGAATACGAGGCGGGA
ATTTTGATCACGGCGAATCAATCGTGCCCCCAGAGGGAAAGACGCTAACT
CCGAAACAGCTGCAAGAGGTTGCTGCCGTGGTCAGCGAGCGGCAAGCGGA
TGTGGTCATTTTGCTCGAGGAAGAAATCCTGAGGTACAACGAGGCCGTCG
ATGTTCACGGGTACAAGCACCGTGAGTGGGCGAGGCTGGAGGTGGAGCGG
AAAGAGCGGCTGTCGGAGAAGTGCCACCAGTCGAGACTGGACCACCTAAA
ACTCGACTCCCTGGCCGGATTGATCAAGTGA
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