mRNA_P-littoralis_Contig1354.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI) HSP 1 Score: 361 bits (927), Expect = 7.390e-120 Identity = 213/383 (55.61%), Postives = 261/383 (68.15%), Query Frame = 1
Query: 1 RACSTLPRSEIAAAREERAQSEAWAKQPGAREVLAQPPFVVAGEGE----GASPPAADVLDSLDSYLKARQWRHPQGSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPELAVVCLGARAESTMPPSFWRETLFALPCVSHLSLHLIGPELSLPSGVTTGG--GGVRSDGRGGASPRHTAVVKVGPRTVEVEWTRAVLGPAAEACVE-SEEEPGAAVGSANSAESGAGEKAATIXXXXAIATVKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEG------GDGVLPRENAFRSLMTSEDPLSVPGAEKLVSCNWGILVAR 1110
RA STL E+ AR++ +++AWAK PGAR+VL QPPF EGE GA+ +A +L+SL+ YL+AR+W + + ARRFLSHLLTYPLTLA+GLREA ++ P+ + + +LAVVCLGARAESTMPP++WRE LFALP VS LSLHLIGPEL LP GV G DG G P TAV+ VG RT ++ WTRA++G +A CV +E++P AA GSA G+G AAT A + E AV+ ADAFVLFNPGLGHPHLR+GW GAL+RLLATGKPI+VSCHS +DL+RD R+LREAGA CCP A G G+G+ +EN FRSLM SEDPLSVPG E LV CNWG++V R
Sbjct: 28 RAYSTL---ELPEARKQGEENKAWAKTPGARQVLDQPPF----EGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARIKQQPEYT---NSDGRRNKLAVVCLGARAESTMPPAYWREALFALPDVSRLSLHLIGPELGLPPGVVAAARPGTAACDGAGTIGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAV----GSGRGAATEPGGAG-------AVEAAEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGAKENPFRSLMASEDPLSVPGDEDLVWCNWGMMVVR 389
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.600e-31 Identity = 98/303 (32.34%), Postives = 140/303 (46.20%), Query Frame = 1
Query: 43 REERAQSEAWAKQPGAREVLAQPPFVVAGEGEGASPPAADVLDSLDSYLKARQWRH---PQGSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPELAVVCLGARAESTMPPSFWRETLFALPCVSHLS---LHLIGPELSLPSGVTTGGGGVRSDGRGGASPRHTAVVKVGPRTVEVEWTRAVLGPAAEACVESEEEPGAAVGSANSAESGAGEKAATIXXXXAIATVKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVL 933
R E A AWA+QPG + L PPF + A+PP L S ++YL +R W + +A R +SHLLTYPLTLA+ L A +EN + L V C+GARAE+T+PP W E LF+ C L L IGPEL +P V + G +P HT ++ G R++E++W R + A ++ ++ E ++ DA+VLF+PGLGH HL GW + ++A+ P+I++ HS D RD L
Sbjct: 9 RAEAAADAAWARQPGIVKALQPPPF------DAAAPPD---LSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAAL--ASVENTRSFSRAG--------LHVECIGARAEATLPPHLWAEALFS--CGRLLDGGRLTFIGPELGVPRAV-------KPASSGDTAPCHT--LRQGGRSLELQWVRGLFHDTASG-----------------------------------RALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 246
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 7.510e-20 Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 1
Query: 67 AWAKQPGAREVLAQPPFVVAGEGEGASPPAADVLDS--LDSYLKARQW-----RHPQGSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPELAVVCLGARAESTMPPSFWRETLFALPCVSHLSLHLIGPEL 471
AWAK P RE L PP A+P AD++ + LD YL+ R W P G RR LSH+L+YPL+LA G+ + GL +G +E L V+C GAR E+ +PP +W E L A P +SH++LH +GP++
Sbjct: 58 AWAKSPAGREALRPPP----PXATPATPRLADLIQAGDLDGYLRYRGWPPDAVASPAG--RRVLSHVLSYPLSLARGIHKLGLASG-----------DEGRLRVLCAGARGEAGLPPQWWMELLHACPALSHVTLHFVGPQV 182
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC) HSP 1 Score: 94.0 bits (232), Expect = 7.090e-18 Identity = 112/363 (30.85%), Postives = 151/363 (41.60%), Query Frame = 1
Query: 10 STLPRSEIAAAREERAQSEAWAKQPGAREVLAQPPFVVAGEGEGASPPAADVLDSLDSYLKARQWRHPQ------GSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPELAVVCLGARAESTMPPSFWRETLFALPCVSHLSLHLIGPELSLPSGVTTGGGGVRSDGRGGA-SPRHTAVVKVGPRTVEVEWTRAVLGPAAEACVESEEEPGAAVGSANSAESGAGEKAATIXXXXAIATVKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEGGDG-------VLPRENAFRSLMTSEDPLS 1056
ST P + +AA RE R ++ W +P L QPP A G P + +L+ Y++ RQW R LSHLL+YPLTLA L +G DT+ +A V +GARAE+T+P ++W+E L P + LH++GPE+ P+ G VR D + R + V + + L P++ S PG A A +A S +A AV A VLFNPGLGHP L + W L+ L A PI+ + HS ED +RD L A E G G V P N F S DPL+
Sbjct: 4 STAPTAAMAA-REAREEA-LWLSKP-TNSRLIQPPAPSAFHAAGEGPSSTSPPPTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLPSL---HGSDTS-SAKAGSPGEVCHVAIIGARAEATLPDAWWQEVLCLQPGL--FCLHMVGPEVYDPA-TRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFR---LSPSSSPPASSASSPGVAATPAPTASS-------------LDPVAPSQASDASPAAVS---AAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWLSGG----------AEDKESGFGDLRVEWLVAPGPNPFASRKLVVDPLN 327
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.270e-15 Identity = 115/363 (31.68%), Postives = 148/363 (40.77%), Query Frame = 1
Query: 10 STLPRSEIAAAREERAQSEA-WAKQPGAREVLAQPPFVVAGEGEGASPPAADVLDSLDSYLKARQWRHPQ------GSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPELAVVCLGARAESTMPPSFWRETLFALPCVSHLSLHLIGPELSLPSGVTTGGGGVRSDGRGGASPRHTAVVKVGPRTVEVEWTRAVLGPAAEACVESEEEPGAAVGSANSAESGAGEKAATIXXXXAIATVKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEGGDG-------VLPRENAFRSLMTSEDPLS 1056
ST P + +AA A+ EA W +P L QPP A G P + +L+ Y++ RQW R LSHLL+YPLTLA L G DTA +A V V +GARAE+T+P ++W+E L P + LH++GPE+ P+ G VR D P+ + + VL P + P SA+S G A XXXX A A VLFNPGLGHP L E W L+ L A P++ + HS ED +RD C A E G G V P N F S DPL+
Sbjct: 817 STAPTAAMAA---REARDEALWLSKP-TNSRLIQPPAPSAFHDAGEGPSSTSPPPTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLPSL---YGSDTA-SAKVGSPGGVSHVAIIGARAEATLPDAWWQEVLCMQPGL--FCLHMVGPEVYDPA-TRAGRESVRLD------PQRQLWMH------RRQGLYHVLAPDLVSSFRLSPSPSPPALSASSP----GVAATXXXXXXXXXXXXXXXXXXXSPAA--LSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDV----------ACLSGGAEDNESGCGDMRVEWLVAPGPNPFASRKLVVDPLN 1140
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A7S3ZJA7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJA7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 9.370e-13 Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1
Query: 736 VKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEGGDGVL-----PRENAFRSLMTSEDPLSVPGAEKLVSCN-WGILV 1104
VK E + + +D+ADA VLFNPG+GHP+L EGW ALE + A+G+P++V+ HS D RD T LE G L P +N FRS + DP A + S N W +V
Sbjct: 162 VKAERRELTKAHLDEADAVVLFNPGVGHPNLAEGWVPALEAIRASGRPLLVTGHSEMDSRRDL-----------------TALEARYGALRFAAPPCQNPFRSRVVIVDPAD---ATHMTSANAWAFVV 270
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: K3WH95_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH95_GLOUD) HSP 1 Score: 75.1 bits (183), Expect = 1.800e-12 Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 769 AVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEGGDGVL--PRENAFRSLMTSEDPLSV 1059
A+ DAFVLFNPG+GHP L++ W +E LLA+ KPI++S S+ DL+RD VLRE + +G L P+ N FR+L DPL +
Sbjct: 65 AIPAPDAFVLFNPGIGHPFLKQRWQPTMEALLASRKPILLSSFSKVDLDRDVAVLREL----------CQSQKGDLKFLASPQSNPFRNLKYQIDPLDL 153
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.510e-12 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 736 VKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREAGAARCCPGREATTLEGGDGVLPRENAFRSLMTSEDPLSV 1059
+ G K E + DAFVL+NPG+GHPHLRE W L+ +LA+GKP++++ S ED +RD L+E A + ++N+FRSL DP +V
Sbjct: 251 INGLYHKIEETKLGTPDAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSPVLKQHELRFR----CRAKQNSFRSLKYQLDPSNV 354
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A7S2XJV5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJV5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.710e-12 Identity = 76/281 (27.05%), Postives = 113/281 (40.21%), Query Frame = 1
Query: 157 ADVLDSLDSYLKARQW---------RHPQGSARRFLSHLLTYPLTLASGLREAGLENGPDTAPTASVEEEEPE-LAVVCLGARAESTMPPSFWRETLFALPCVSHLSLH----LIGPEL--SLPS-----GVTTGGGGVRSDGRGGASPRHTAVVKVGPRTVEVEWTRAVLGPAAEACVESEEEPGAAVGSANSAESGAGEKAATIXXXXAIATVKGEAEKTVERAVDDADAFVLFNPGLGHPHLREGWAGALERLLATGK-PIIVSCHSREDLERDARVL 933
A+ SLD YL+ R+W Q A + LSH LTYPLTL + + P +++ E + + C+GARAE+++P +WRE L + +SH H +GP++ +LP T + G S H+++ R P VES T+ ++D D FVLFNPGLGH +L +GW L+ L K P++++ HS D +RD VL
Sbjct: 99 AENTRSLDEYLRWRRWPLAGTPPFDTENQIMASKLLSHPLTYPLTLGNSI------------PALFFDDQSKETIRICCIGARAEASLPHDYWREMLI-MASLSHSCRHWHIDFVGPDVPQNLPPQTIHLSFDTSAASHNEKDQDGDSSTHSSLTM-----------RFFRAPTFHELVESP-------------------------------------NNTLH--MNDWDGFVLFNPGLGHANLEDGWKDTLDLLFFHAKKPLLLTAHSVLDAQRDTTVL 316
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Match: A0A7S2L7N8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L7N8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.810e-11 Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 787 AFVLFNPGLGHPHLREGWAGALERLLATGKPIIVSCHSREDLERDARVLREA--GAARCCPGREATTLEGGDGVLPRENAFRSLMTSEDPL 1053
AFVLFNPGLGHPHL+ GW A++ ++ T P+ ++ HS D +RD +LRE+ R P + G DG R F S M++ DPL
Sbjct: 19 AFVLFNPGLGHPHLKSGWRDAMDSIVQTRLPLFLTAHSELDQDRDWNMLRESFERVGRPMP-LHVVHVHGDDGY--RLCPFASRMSTPDPL 106 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1354.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1354.4.1 >prot_P-littoralis_Contig1354.4.1 ID=prot_P-littoralis_Contig1354.4.1|Name=mRNA_P-littoralis_Contig1354.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp RACSTLPRSEIAAAREERAQSEAWAKQPGAREVLAQPPFVVAGEGEGASPback to top mRNA from alignment at P-littoralis_Contig1354:8708..10355+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1354.4.1 ID=mRNA_P-littoralis_Contig1354.4.1|Name=mRNA_P-littoralis_Contig1354.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-littoralis_Contig1354:8708..10355+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1354:8708..10355+ >mRNA_P-littoralis_Contig1354.4.1 ID=mRNA_P-littoralis_Contig1354.4.1|Name=mRNA_P-littoralis_Contig1354.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig1354:8708..10355+ (Pylaiella littoralis U1_48)back to top |