mRNA_P-littoralis_Contig1354.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1354.1.1
Unique NamemRNA_P-littoralis_Contig1354.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1354.1.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.680e-20
Identity = 47/90 (52.22%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 HARSEEEWPEQYKYHYPKIFDGSAGPCKFLIRETRDRDRERKRWLKLSRDEKVTGNKRQASQKVYRDKCFPIDGTDVGERPCVIFECDET 270
            HAR+EE+WP QYKYHYPKIFDGSAGPCK                                   VYRDKCFPI GTDVGER CV FEC +T
Sbjct:  178 HARTEEKWPGQYKYHYPKIFDGSAGPCK-----------------------------------VYRDKCFPIGGTDVGERDCVNFECGDT 232
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE2.680e-2052.22ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1354contigP-littoralis_Contig1354:1260..2418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNU0
PFAMsABC2_membrane,ABC_tran
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.39e-21
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size270
COG categoryV
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.7642753-CDS-P-littoralis_Contig1354:1259..13401680789624.7642753-CDS-P-littoralis_Contig1354:1259..1340Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 1260..1340 -
1680789624.7875757-CDS-P-littoralis_Contig1354:1703..18081680789624.7875757-CDS-P-littoralis_Contig1354:1703..1808Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 1704..1808 -
1680789624.795814-CDS-P-littoralis_Contig1354:2334..24181680789624.795814-CDS-P-littoralis_Contig1354:2334..2418Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 2335..2418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1354.1.1prot_P-littoralis_Contig1354.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1354 1260..2418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1354.1.1

>prot_P-littoralis_Contig1354.1.1 ID=prot_P-littoralis_Contig1354.1.1|Name=mRNA_P-littoralis_Contig1354.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
HARSEEEWPEQYKYHYPKIFDGSAGPCKFLIRETRDRDRERKRWLKLSRD
EKVTGNKRQASQKVYRDKCFPIDGTDVGERPCVIFECDET
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mRNA from alignment at P-littoralis_Contig1354:1260..2418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1354.1.1 ID=mRNA_P-littoralis_Contig1354.1.1|Name=mRNA_P-littoralis_Contig1354.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1159bp|location=Sequence derived from alignment at P-littoralis_Contig1354:1260..2418- (Pylaiella littoralis U1_48)
CACGCGCGGTCGGAGGAGGAGTGGCCGGAGCAGTACAAGTACCACTACCC
CAAGATCTTCGACGGATCGGCCGGTCCTTGCAAGGTGAAAGGGCAACTGC
CGTGCATGCAATAACGAGAGGCCAGCTGCGGCTGCGTGCGTAGATTTTTC
CCAGCAATTGTCTCTCGGGTCTTATATACGAAGCATATTGTTTGGCCGCG
TGGCGCGTCTCTAGGTGTCAAATCAGCCCGTGAGCACGAACGATTTGATT
TCCTTTGAGTGGGGGAAGCGCCGAATTTTATTTTCGTGCAGGAAATCTAT
CGAATCGACACGATATGGACACGGCAAGGCTTGGTGGTGCAATGTGACTA
GACACACACAGACATCTACAGAAAGGACTTCGAAAAACGTCTTCTCTACC
TCGTCTCTTCGCCTTGATTGTTTCTGCCGAGGTTTGCCAAAGTTTTCGCA
GTGAGTAACGGTGCCTCGAAAATGCCTTTCTAAGACCGTGTACGTCTGCC
TCTTAGATAGACTCGTATGCCGAAGCTGTCATGTTGGCGGTGCTATGGTT
CCGTTGTTGCTTTGGCTTGTCGCTGTCGTGTTCATTTCGGGGGGGTTTGC
TTTTCAGCAGTTCTTGATCCGAGAGACAAGAGACAGAGACAGAGAGAGAA
AGCGGTGGTTGAAGCTCTCTCGCGACGAAAAAGTGACAGGCAACAAAAGA
CAAGCGTCGCAGAAGGTGGGTGGAGGTAAACACAACAGCTCGTTCGTGTG
ACTGGCCTTCCTTCTGTGTGACCCCGGCTGGTGCACCCACTTCACACCGA
AAGGTGTAGACTGGTGCCCTGAATAAATGGGACGACAACTCGCACACATA
CATATCAAGCACGCACTCGCGGGGGCGCGTAGAATAGGTCCAACGATTTG
TCACTGCTTCGTTTCGCGAGCGTCTGATGTGGTGATGATTCCGTTCAACA
AGCGGGCATTCGAGCCCGCCCTCCCTCACAACGTGCAACACGTGTGTTGT
CGGCCCCTCCGCCGCCGCCGCCGCCGTCATTGTCGTTGCCGCTGCTGCTC
CGCTACTGCTGGCGGAACTGATCTGAAGGTTTACCGCGACAAATGCTTCC
CAATTGACGGGACGGATGTTGGGGAGCGGCCGTGCGTTATATTTGAGTGC
GACGAAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1354:1260..2418-

>mRNA_P-littoralis_Contig1354.1.1 ID=mRNA_P-littoralis_Contig1354.1.1|Name=mRNA_P-littoralis_Contig1354.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1354:1260..2418- (Pylaiella littoralis U1_48)
CACGCGCGGTCGGAGGAGGAGTGGCCGGAGCAGTACAAGTACCACTACCC
CAAGATCTTCGACGGATCGGCCGGTCCTTGCAAGTTCTTGATCCGAGAGA
CAAGAGACAGAGACAGAGAGAGAAAGCGGTGGTTGAAGCTCTCTCGCGAC
GAAAAAGTGACAGGCAACAAAAGACAAGCGTCGCAGAAGGTTTACCGCGA
CAAATGCTTCCCAATTGACGGGACGGATGTTGGGGAGCGGCCGTGCGTTA
TATTTGAGTGCGACGAAACA
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