mRNA_P-littoralis_Contig1354.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1354.10.1
Unique NamemRNA_P-littoralis_Contig1354.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1354.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1354contigP-littoralis_Contig1354:21005..25034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.659111-CDS-P-littoralis_Contig1354:21004..211091680789624.659111-CDS-P-littoralis_Contig1354:21004..21109Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 21005..21109 +
1680789624.6724281-CDS-P-littoralis_Contig1354:24970..250331680789624.6724281-CDS-P-littoralis_Contig1354:24970..25033Pylaiella littoralis U1_48CDSP-littoralis_Contig1354 24971..25033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1354.10.1prot_P-littoralis_Contig1354.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1354 21005..25033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1354.10.1

>prot_P-littoralis_Contig1354.10.1 ID=prot_P-littoralis_Contig1354.10.1|Name=mRNA_P-littoralis_Contig1354.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
GTPEIGSLDSGRSGNDGNFDVEQDNFSSIDAQGQKALVSATEGVHDSSTT
TAVCGG
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mRNA from alignment at P-littoralis_Contig1354:21005..25034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1354.10.1 ID=mRNA_P-littoralis_Contig1354.10.1|Name=mRNA_P-littoralis_Contig1354.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4030bp|location=Sequence derived from alignment at P-littoralis_Contig1354:21005..25034+ (Pylaiella littoralis U1_48)
GGCACACCGGAGATCGGCAGCCTCGACTCCGGCCGCTCTGGAAATGACGG
CAATTTCGATGTCGAGCAAGATAACTTCTCCTCGATTGACGCTCAGGGGC
AAAAGGTGGGAAAGACCGGGATTGGAATATCATTTGCCATGCCACATATA
AACGGCTTCCGTGGCACACTGGGCCGGGTAGACCCCGTCTTGGCGGAGCT
ATCCGAAATTAACATCGCTATTCAGGCTTAGGGTTATTGAAATTGTCATC
ACAAGACAAAAAATATGTTGGCATTGTTTTCATGGTGGGTGCGTGCGCGT
TGTTTTCGGCGTCATGAAACTGTATCGAAATCAGGCTGTTTCCAGCGAAC
GGGGTGCGTGGAAGATAAAACTACCGTAAATACATATAAGCTTTTGTGTT
TTCTTCTTCGGAAAATTCTCTCAATTCCTTGGGTCGAAAACGGCCGGAGA
TGACAGCTGACTGTTTTTATGTGAGCGGTTCAGCGAACGGCCCAAAAAAC
ACGTCAGGTCCAACAGCTGTTTGGTGAACAGTAACAAAGCAACAGCTGTT
GACGGGTGAACAGACCGACGTCAGCAGCACCAGCTGGTGATTGGCCCCAC
AAAAAACGTCAGCACGCCAGCTGATGAATGTTTTACATGCGCCTGATTCC
ACAAGCAGGCGGCTAGACTACATATATGGACGCACGCAACGTACGTGTAC
ATAAAGCACAGCAGTAGTATAGTCATGCACACGTGTGTACATAGCAAGCA
AGCCCAGATCGCCTCGCATCTCACTTTTGCCGCGCTCGATGTCCAGCATC
GCGTACCTGATGCTACACTGCTATGACAACCAGTCAGAGCGAAAAAGAAA
AGTCAAACGCGCTACATACGGACGGGTGACTGCTGTGTGAGACCTGTTTT
TACTTTGCGATAGTAATAGTGAGACAACAACCAGATAGATAGACAAATGC
TGCTTTCAGTGCTTCCGCGCCGGAGCTCCATATCTATCTGCACATGTCTG
AGAGTGTCGGATTGGCTGGTTGAGGCTTGCGGTCGTGAGCTCGTGGCATG
AGAGCGGGTTTTAAACCCTTTGACGCCCCAGAGGTCTGAAAAAAATAATC
ATGGAGCCAAAAATTAACTTAATTCCGGTGCGCCGATGATTGGCGAATGG
TGGGCAGTCTCAAAAAAAAAAAGGCACTGACATCTCGCTGGCTCTGTCCG
GTGAAAAAAGGGTGTGACTTGGTTATACACAGAAATCTGTCTCCAATTCG
CCCTGATAAAAATGGGGACAGATTTCAGTGTAAAGCTACACAATCTTTTT
TGGCGGGGTCAACTACACAAAAGTTGTTTGTTTAGTTTTGCAGAATATTT
ACTTCAAAGGGATACTGCTGTATGCAAGGTAGCACGCAGCAACACCGCCA
CTTAGCATGGCAGATCAGGGTACCCCGCTCGACAACCACACAGCAGTAGG
GTTCCACTCCGCAAGGTTGTACCCGCGCACGACACTCAATCAGGGTCTAT
AGCATCTCATCAGCAGCAGCAAGCAGCAGCTGCACTACTAGCCTACTGAC
GTCAAACACATCATATGTATGTTGCATGTATGTGATCAACGCAAGGGTGT
CGGTATGTAATGGTACCCATCCATGTGATGATACTAGTCCGAGATCGCCG
GGTATGTTTGTGAGCTTACAAACGTGCGTGGCGTGATGTGTCTATATATT
TGTAGTGTCGGCCCCCGTGTGCGTAGTGTGTCTCACCTACCCATCGCACG
ACACATCATCAGGTAGCAGCTTGCTGCAGCATGCACAGCAGCAGCAGCAG
CAGTACAATAATAGTTGCAGAACTTAGGGTATGTATGTGAGTGCAGCAGT
ACATCAGCATCAGCGTTTCATATGATATGAGCGGTAGTCTAACATATAGT
CTATGTATCATGTCTTATGTATGTGTGCATGTTGTGTGCAATGCAGGGAG
GGTTGCCGGCATGAAGTGTGATACAACAAGACGATCGCCATTGTGTCTAC
CATGCTGTCGAGGGAAGAGAATAACACACAACAAACCTAACAGCCGGGCG
CTCTTGGTCTCCCATAGTAATAATAAAAAACAAATGTGGCACGGAGGCAG
CCAACTACTGGTTGATCCACACACATTCCATCGAGCTCACGGAACCACAC
CCAAAATATCTGTAGATATTCGTCTTTAAAACCCAAGTAAAAAAAAAAGA
AGGTGTCCCCAAATTGTCCCCAATTGGGATTGGGGGGTTCAAAAGGTTAA
CGGAAGGCCAAAGAGCCCGTTTTAACGGAAGGCCAAAAAAACGAAATAGC
GAAAACGAAAACGAAATTGAGCTCTGATCGGTCGGGAAAAAAAAACGAAA
GAGGCATGTTTTCGTTTCAGCGTCCTCCGGGGAGGCGTTCCTTCGTTTTC
GATTTCGCAAAAATAAGGTGCTTCGGACCTTTTTTTTTGCGAAAACGAAA
ACGAAATGCATGGAGTTTGGTAACCTCGGAGACTTGCCCATGAGCCTCCC
AGGCAGCGAACTCCTTCACACAGACTGCGACTGCGGTAGACGTCGGTGCA
ACAGGCACCAACCAACCCGAGCAGAGCGAGGTCCAATCCACACACTACAG
CAGCGCAGCAGACAGCGCCGAGCCGTCATACCCGTCAGTCAGTGCAACAG
ACAGCACACCAGGGCCGTCTACGATACCCACACGCTGACACGATGCATTC
CACCGCGTTATTTGGAATTGGGCCCCGCGCGTTCTGGGTTTACATCATTT
TTGGCGTTATCTCCTCTATTCCGCTGCTCCAGCTCCTCGCAGCAGAAACG
CGTTAATACCGAAATGGAGTTTTTTATTTTTTTCCCCAGAAGAACGAAGT
TATTTCGTTTTTGTTTCCGCTATTTCGTTTTTTTTAAAAGCGGTGCCCTG
GAGAAACGAAAAGTTCGTGTGTTTTGCGGCGAGATGAGCGTGTGTATCCC
ATAATCGATCCGGCTCTCCGCGCTCCGCCATACTACACAGACATTGCCAC
TTCTCTGCAGGAGGCATCCCCTGATGTACATGCCACTGTCGATCACGAGC
GTAATTTTGAGAGGCACCACTTCCCTCCGCGCGGAGTTATCCCTATCGTT
GGGGTTGATGTTGTGCTGCAAAACTGGGTCAAAAATTAAAATAAAATTGG
GGGTCGTCGGTGGTGTGGATTTTCTAGGTCCTGGAGGGGTGGGGGGCGGG
TGTAAAAAAACCCGGCTTTTCACGAGGTGGGGGGGGTTCAACCGTGAACC
GTTACAGGCAGTAAGTAGTCTCCCGTTTTTTATTTGTCTCTCCAACACAC
CACAGCAGGCACTTCCGCAAAATAAATGTGTCTTCGGCTTAGTTAGTTAG
TCTTGAATCACCCCCTATCGCACTCTTTATACCCTAATTCATTAGCTCAC
TCTGAAAGGGGATCTTGTATATGTATATATTTTTTTCGCGGCTGCAATCC
GTCCCACGGGTGAAAGGGTGCCGTCGGGAATTGCAAAGTTCAGGGGCGGT
GCTGGCATACACCGCGGAGTCAAACGTGCTTTCCAGCCAACCTCTCTTCT
CCCTCACATTTAACTTTATTTTTTACGTCACGCCTGACACCCCGCCTCTC
CGAATCCTGGACCTGCCCGGTGAACTGTTCGGCAATCTCTCCTATACTGC
AGTCGACGGGCATTCGCGCCCGTTCGTCACAAAAAACAAAATTACCTTTG
CTGCGGTGCTACAGTCAAGAGGACATCCCCTGCAAAGCACACTATCGTTG
CCGTAAGAGAAGCGTCCCGTATCCATTTGCCATACTGCATTTAGGAAAAG
TAAACCTCGTCTGGCACAAGAACGCCCAGCGTGCGTCTGATGCGAACAAT
GACGTGTCATTCAATCGGGCAAACAGTCACCTAATATAGAGTGACGTGTA
CAAGTTGTAGTGATACGTTTCCCAACCGCCATTACTTTCGTTCTATCGCC
GCGCCTACCCTTGCAGGCGCTCGTGTCGGCCACGGAGGGCGTTCACGACT
CGTCGACAACCACTGCCGTCTGCGGCGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1354:21005..25034+

>mRNA_P-littoralis_Contig1354.10.1 ID=mRNA_P-littoralis_Contig1354.10.1|Name=mRNA_P-littoralis_Contig1354.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1354:21005..25034+ (Pylaiella littoralis U1_48)
GGCACACCGGAGATCGGCAGCCTCGACTCCGGCCGCTCTGGAAATGACGG
CAATTTCGATGTCGAGCAAGATAACTTCTCCTCGATTGACGCTCAGGGGC
AAAAGGCGCTCGTGTCGGCCACGGAGGGCGTTCACGACTCGTCGACAACC
ACTGCCGTCTGCGGCGGT
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