mRNA_P-littoralis_Contig1353.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1353.1.1
Unique NamemRNA_P-littoralis_Contig1353.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.020e-43
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 1
Query:   52 MMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE 267
            MMNYNKFQGSSKGWRFSP VLRWALYALA MGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE
Sbjct:    1 MMNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE 72          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.240e-29
Identity = 56/89 (62.92%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE 267
            +F +LPEG+LARAVV+EMM YN+ +GS+KGWRF+  VLRWA YALAKMG AGY V++DVLHLP I H++K+  AA+ +T  G Q+HL+E
Sbjct:  256 VFARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIV-AASTSTKMGEQYHLIE 343          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.460e-28
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE 267
            LF  +PE +  RA+VD MM+ N+ +G  KGWR+SP V+RW  YALAKMG AGY +I+D+LHLPSI  + + RRA  GT TWG+QH L+E
Sbjct:   60 LFADIPEDSYERALVDHMMDRNEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIE 148          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.130e-14
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   37 AVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE 267
            ++  +   +N+  GS KGWR++P VLRWALYA+ + GS+ Y V+++VLHLP   H+RK+       +  G+QHH ++
Sbjct:  254 SLSQDNYEWNRVNGSKKGWRYNPKVLRWALYAMHRCGSSAYEVLREVLHLPDPRHVRKIGMKTDPISA-GIQHHNIK 329          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.840e-10
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTT 240
            +  +LP+G+  R   ++ + +N   G +KG+RF P  +R A+Y     G+A YN++++VLHLPS   ++++RR AA   T
Sbjct:  521 IHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRT 600          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.860e-10
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTT 240
            +  +LP+G+  R   ++ + +N   G +KG+RF P  +R A+Y     G+A YN++++VLHLPS   ++++RR AA   T
Sbjct:  430 IHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRT 509          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.420e-10
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTT 240
            +  +LP+G+  R   ++ + +N   G +KG+RF P  +R A+Y     G+A YN++ +VLHLPS   ++++RR AA   T
Sbjct:  388 IHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRT 467          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.710e-8
Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 KLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAA 225
            KLP  +  R ++++++  N  +G+ +G+RF  + LR+ +Y     G+A YN +++VLHLP   H+R +R  A
Sbjct:  222 KLPAESDERTLLNDLIQGNLAKGNGRGYRFHESTLRFCIYYSGVAGTAAYNALREVLHLPFPSHIRHLREKA 293          
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-7
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   25 TLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTT 240
            TL      + + +N   G +KG+RF P  +R A+Y     G+A YN++ +VLHLPS   ++++RR AA   T
Sbjct:  296 TLPLPCAQDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRT 367          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KQL9_9PHAE1.020e-4397.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE2.240e-2962.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.460e-2857.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE4.130e-1441.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE4.840e-1036.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI4.860e-1036.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI6.420e-1036.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRH8_9PHAE9.710e-834.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.800e-737.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1353contigP-littoralis_Contig1353:3401..4050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.5968983-CDS-P-littoralis_Contig1353:3400..34481680789624.5968983-CDS-P-littoralis_Contig1353:3400..3448Pylaiella littoralis U1_48CDSP-littoralis_Contig1353 3401..3448 +
1680789624.606194-CDS-P-littoralis_Contig1353:3830..40491680789624.606194-CDS-P-littoralis_Contig1353:3830..4049Pylaiella littoralis U1_48CDSP-littoralis_Contig1353 3831..4049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1353.1.1prot_P-littoralis_Contig1353.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1353 3401..4049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1353.1.1

>prot_P-littoralis_Contig1353.1.1 ID=prot_P-littoralis_Contig1353.1.1|Name=mRNA_P-littoralis_Contig1353.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
LFDKLPEGTLARAVVDEMMNYNKFQGSSKGWRFSPNVLRWALYALAKMGS
AGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVE
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mRNA from alignment at P-littoralis_Contig1353:3401..4050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1353.1.1 ID=mRNA_P-littoralis_Contig1353.1.1|Name=mRNA_P-littoralis_Contig1353.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=650bp|location=Sequence derived from alignment at P-littoralis_Contig1353:3401..4050+ (Pylaiella littoralis U1_48)
CTGTTCGACAAGCTCCCGGAGGGTACCCTGGCGAGGGCGGTGGTAGACGT GAGTTGTCTGTACGTCCTTTGGTGTCGTATTGGGTTATCGGGTGGAGAAT GTTTGAACGACAATGCTCCGAGACACCGTAGCGCGCGACCACACGACAGA CTTGTGTACCTTCGATGACGTACCAGCAAGGTCATGGCCGATGACCGCTG TGGATGCCACTCACAGCGCTAAGATCCTTTGGCACTATGCCCCCCTCCCC CTCCATGCCCAACTGGGACACGGTCAAGTGTTGTCGTCTTGTCGCAGGGT CATCGTACAGATGAGGCTGCAATGCATATTTTATTCGCTCCGATGTTTGG TGTTCCTTCACGTCGACGACTTTCCCGACACGTTGGAAACAGTAGCACTA AGCCCTTTCTGACTCCACTTGTGTATGCAGGAGATGATGAACTACAACAA GTTCCAGGGGTCCTCGAAGGGATGGCGATTCAGTCCGAATGTGCTTAGGT GGGCCTTGTACGCCTTGGCGAAGATGGGCTCGGCTGGGTACAACGTCATC CAAGACGTTCTTCATCTCCCGTCCATCGGTCACCTCAGGAAGGTCAgGAG GGCCGCTGCCGGGACGACGACATGGGGCGTACAGCACCACCTCGTGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1353:3401..4050+

>mRNA_P-littoralis_Contig1353.1.1 ID=mRNA_P-littoralis_Contig1353.1.1|Name=mRNA_P-littoralis_Contig1353.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig1353:3401..4050+ (Pylaiella littoralis U1_48)
CTGTTCGACAAGCTCCCGGAGGGTACCCTGGCGAGGGCGGTGGTAGACGA
GATGATGAACTACAACAAGTTCCAGGGGTCCTCGAAGGGATGGCGATTCA
GTCCGAATGTGCTTAGGTGGGCCTTGTACGCCTTGGCGAAGATGGGCTCG
GCTGGGTACAACGTCATCCAAGACGTTCTTCATCTCCCGTCCATCGGTCA
CCTCAGGAAGGTCAgGAGGGCCGCTGCCGGGACGACGACATGGGGCGTAC
AGCACCACCTCGTGGAG
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