mRNA_P-littoralis_Contig1352.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1352.5.1
Unique NamemRNA_P-littoralis_Contig1352.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1352.5.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.650e-5
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  487 VSPLHLTRYKIIAAIGVKIAKITPSRGFAIELGSA 591
            V+ L +  YKIIAAIGVKIAKITPSRGFAIELGSA
Sbjct:  335 VAGLAIYGYKIIAAIGVKIAKITPSRGFAIELGSA 369
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BLAST of mRNA_P-littoralis_Contig1352.5.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-5
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  487 VSPLHLTRYKIIAAIGVKIAKITPSRGFAIELGSA 591
            V+ L +  YKIIAAIGVKIAKITPSRGFAIELGSA
Sbjct:  391 VAGLAIYGYKIIAAIGVKIAKITPSRGFAIELGSA 425
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BLAST of mRNA_P-littoralis_Contig1352.5.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.720e-5
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  487 VSPLHLTRYKIIAAIGVKIAKITPSRGFAIELGSA 591
            V+ L +  YKIIAAIGVKIAKITPSRGFAIELGSA
Sbjct:  392 VTGLAIYGYKIIAAIGVKIAKITPSRGFAIELGSA 426
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BLAST of mRNA_P-littoralis_Contig1352.5.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.160e-5
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  478 LTRVSPLHLTRYKIIAAIGVKIAKITPSRGFAIELGSA 591
            L  V+ L L  Y IIAAIGVKIAKITPSRGFAIELGSA
Sbjct:  399 LGMVAGLALYGYNIIAAIGVKIAKITPSRGFAIELGSA 436
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1352.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JNL8_9PHAE1.650e-582.86Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNE7_9PHAE1.710e-582.86Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI1.720e-582.86Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI3.160e-578.95Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1352contigP-littoralis_Contig1352:12777..13368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size592
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.423085-CDS-P-littoralis_Contig1352:12776..131421680789624.423085-CDS-P-littoralis_Contig1352:12776..13142Pylaiella littoralis U1_48CDSP-littoralis_Contig1352 12777..13142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.4346642-UTR-P-littoralis_Contig1352:13142..133681680789624.4346642-UTR-P-littoralis_Contig1352:13142..13368Pylaiella littoralis U1_48UTRP-littoralis_Contig1352 13143..13368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1352.5.1prot_P-littoralis_Contig1352.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1352 12777..13142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1352.5.1

>prot_P-littoralis_Contig1352.5.1 ID=prot_P-littoralis_Contig1352.5.1|Name=mRNA_P-littoralis_Contig1352.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
WADSESSPVSPSTGELSGSTLVFPSRCCCALLTGQITVASIRCDSIEPAL
LFFSAIQISRLFWLTLESAIIRSVSVVFAHSLVLHWRIVPCRKQAVCLDV
LICLFWLNYLGCCLEHNSTLT*
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mRNA from alignment at P-littoralis_Contig1352:12777..13368+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1352.5.1 ID=mRNA_P-littoralis_Contig1352.5.1|Name=mRNA_P-littoralis_Contig1352.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=592bp|location=Sequence derived from alignment at P-littoralis_Contig1352:12777..13368+ (Pylaiella littoralis U1_48)
TGGGCGGACTCGGAATCGTCGCCGGTCTCTCCCTCTACGGGTGAGTTGTC
GGGCTCGACGTTGGTGTTTCCTTCTCGCTGCTGCTGCGCTCTTTTGACAG
GTCAAATCACTGTGGCGTCCATCCGTTGTGACAGCATCGAGCCTGCCCTT
CTTTTCTTTTCCGCCATACAAATAAGCCGTCTGTTCTGGCTTACCCTTGA
ATCTGCCATAATTCGGTCAGTTTCAGTTGTTTTTGCTCATTCACTTGTCT
TACACTGGCGTATAGTGCCGTGTAGGAAACAGGCCGTGTGCTTAGACGTT
CTGATCTGTCTGTTCTGGCTCAACTATCTCGGCTGTTGTCTTGAACATAA
TTCTACACTTACGTAGTCCTCATGACACGTCCGAAGTTCTCACCTGTTGA
AGCCGTTATCTGGCAGCGAGCAGCCGTCGAGCCTTGACCGCTCTGTTTGT
TAACCTTCCTCGCTCTGCCACTCTTGCCTTACGCGTGTTTCCCCTTTACA
TTTGACCAGGTACAAGATCATCGCCGCGATCGGAGTGAAGATTGCGAAGA
TCACTCCGTCGCGTGGTTTCGCGATCGAGCTCGGCTCCGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1352:12777..13368+

>mRNA_P-littoralis_Contig1352.5.1 ID=mRNA_P-littoralis_Contig1352.5.1|Name=mRNA_P-littoralis_Contig1352.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1352:12777..13368+ (Pylaiella littoralis U1_48)
TGGGCGGACTCGGAATCGTCGCCGGTCTCTCCCTCTACGGGTGAGTTGTC
GGGCTCGACGTTGGTGTTTCCTTCTCGCTGCTGCTGCGCTCTTTTGACAG
GTCAAATCACTGTGGCGTCCATCCGTTGTGACAGCATCGAGCCTGCCCTT
CTTTTCTTTTCCGCCATACAAATAAGCCGTCTGTTCTGGCTTACCCTTGA
ATCTGCCATAATTCGGTCAGTTTCAGTTGTTTTTGCTCATTCACTTGTCT
TACACTGGCGTATAGTGCCGTGTAGGAAACAGGCCGTGTGCTTAGACGTT
CTGATCTGTCTGTTCTGGCTCAACTATCTCGGCTGTTGTCTTGAACATAA
TTCTACACTTACGTAG
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