mRNA_P-littoralis_Contig1351.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1351.9.1
Unique NamemRNA_P-littoralis_Contig1351.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC)

HSP 1 Score: 259 bits (663), Expect = 5.440e-74
Identity = 186/461 (40.35%), Postives = 250/461 (54.23%), Query Frame = 2 
Query:  464 GSSVSQGT-GSGTWLTTGGVVGLSRGGSACGIILRGELEMHDNTGFTSRNAGGVFRQMNQTTV-TLVRNLATFPSGVNGTIAGGVVGYV-FFSSFEKGLNAMKGDVSGTKNVGGVVGYVRHNDASQSVHTLIXXXXXXXXXXXXXXXXGGVVGLLDHESN-LYHTFLNYMAGDITCELTLTNRCGGLVGRSENDPNITTSINAMKGYVDNTVVGTVSSAGVASSASLAIT-VDTSFGLTYLVDNHSTTSAVTGLPTDPDYYDLPFASLDGTDGNGVVYAWGVVYGN-ETALDLAPRPLSIKASFGAVGGATAYRLTVQKASGDDDTVRTVHTGFTDLVKNIHSLTPETEYIVRLYSTTDGTQYDLHLEDSATTTANSVANHQMLDFRNQSGAYDLSEFDAGATRSVYEIANELFATGDAVVVSVGGRAMTSKFVKRGETASIVGESALLLPFESTSGNLSI 1828
            GSS+ Q +  S T+   GGV+G +   +  GI L GE+ +  +   T    GG+    N  +V TL+RNLATFPS + G   GGV+G   F +S  K LNAM GD+ G    GGV+G  +  + SQ +  L+                GGV G + +E++  Y T LNYM GDI                +    ++ TS+ AM GYV          A V     + I  VD SFGLTY +D+  TT A++GLP D +   LP+  L GTD  G  YAW  V+GN    + L P+PL I  +F AV GA AY+LT +  +  D+    V TGFTDL + +  L PETEY + LYS+TDGT Y      SATT AN  +N+   DF N+SG YDLS+F   +   ++++A  LF+TGD +VV VG    T+KFVK GE  SIVGE AL +PF  T+ + +I
Sbjct:  154 GSSIEQDSITSDTYPKVGGVIGQTDTATVQGITLEGEVSVICSPSATRAYVGGIIGSANSNSVVTLLRNLATFPSTLKGGEVGGVIGRCQFATSISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVGNARA-GGVFGGIQYENDHTYTTLLNYMTGDIXXXXXXXXXXXX----TGTTYSVNTSMVAMNGYVK--------FAAVFEDPGIVIAHVDPSFGLTYTIDHGITTDALSGLPIDSESI-LPYFDLTGTDNYGTSYAWEFVFGNLPEGMTLVPKPLFIDVTFAAVSGAIAYKLTKKTTTATDEI--DVATGFTDLAQRVRDLQPETEYTISLYSSTDGTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTKFVKVGENTSIVGEEALFIPFNETAQSANI 598
[Close]
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC)

HSP 1 Score: 219 bits (559), Expect = 4.110e-59
Identity = 169/460 (36.74%), Postives = 232/460 (50.43%), Query Frame = 2 
Query:  464 GSSVSQGTGSGTWLTTGGVVGLSRGGSACGIILRGELEMHDNTGFTSRNAGGVFRQMNQTTVTLVRNLATFPSGVNGTIAGGVVGYVFFSSFEKGLNAMKGDVSGTKNVGGVVGYVRHNDASQSVHTLIXXXXXXXXXXXXXXXXGGVVGLLDHESNLYHTFLNYMAGDITCELTLTNRCGGLVG-RSENDPNITTSINAMKGYVDNTVVGTVSSAGVA-SSASLAITVDTSFGLTYLVDNHST----TSAVTGLPTDPDYYDLPFASLDGTDGNGVVYAWGVVYGNETALDLAPRPLSIKASFGAVGGATAYRLTVQKASGDDDTVRTVHTGFTDLVKNIHSLTPETEYIVRLYSTTDG-TQYDLHLEDSATTTANSVANHQMLDFRNQS-GAYDLSEFDAGATRSVYEIANELFATGDAVVVSVGGRAMTSKFVKRGETASIVGESALLLPFESTSGN 1819
            GS + QG     +   GGVVG   GGS  G+ L GEL++       ++  G V      T VTLVRNLA F S V G   GGV G     +  K LNAM+G +      GG+ G +R   +SQ V  L+                 G+VG L    N +  +LNYM+GDI     + +R  G++G R   D   T ++NAMKG   +        AG+        + +DT FGLTY  D+ ST    T   +    DP+   LP  +L GTD   V Y W  V+GN T ++   RPL +   FG V GAT YRLT Q +    +T  TV T F+   K   SL  E+ Y+ R+YS TD  ++Y L  + S TT AN  +N+   D++ +    +DLS FD     + +E+ NE+F TGDA+V+ +G     +KFVK G +  I GESA+L+PF  T G+
Sbjct:  156 GSLIEQGDVPNGYSNMGGVVGQLAGGSMYGVTLSGELDVVPGPNMATQAVGCVIGYAGNTIVTLVRNLAKFTSTVTGYNVGGVFGDSSAVTITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQVVGELVNSMNGDIEVTGAGFC-AGIVGYLYSSLN-HDKWLNYMSGDIVS--AVASRSAGIIGQRVAADYTFTNTLNAMKGSTYH--------AGLPYDHGETMVYIDTEFGLTY-TDSLSTALFSTMDTSAFTLDPET-SLPVIALTGTDSESVAYDWEFVFGNNTTIEFVARPLHVDVKFGEVPGATQYRLTKQLSPDGVET--TVDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSETKKTKFVKLGGSVPIDGESAVLIPFLETGGS 599
[Close]
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K)

HSP 1 Score: 106 bits (265), Expect = 4.630e-20
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:    4 TTVTRVLDSNSKYEIS-KDHLVQLMNSGALYTNAGSAPTDFMSADGVQTADIDLLNDSANIKPIGV-----TASKFKGEYDGNSFTISNWTYTDPNFGTATETYETYVGLFGETSSASLKNIRMAGVCVLEGYGSSAGMIGG-QISDSTISNVECDFARTRLFRVAGHGIRDVADNGRCRGPFEG 537
            TTVT    + ++YE+S K HL+Q+M+ GALYT+ G  P ++ S   +QT DIDL++D  NI PIGV     T+  F+GEYDG    ISNW     +F + T+TY  + GLF  T S +LK++R+ GV  L G     G + G   S +TI ++E DF+   +   +G  I  V   GR RG   G
Sbjct:    2 TTVTWT-KTGTQYEVSSKQHLLQIMHKGALYTDLGDPPAEYWSESYLQTTDIDLIDDHENITPIGVSIGSITSDSFQGEYDGGCHAISNW-----SFASGTDTY--FAGLFA-TVSGTLKHVRLDGVWTLSGSAKYNGFLCGYSTSTATILDIEADFSTGTILEFSGE-ITGVLF-GRARGDVYG 175
[Close]
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Match: A0A3C0YPS8_9BACT (Glug domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0YPS8_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.120e-5
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:  145 TADIDLLNDSAN-IKPIGVTASKFKGEYDGNSFTISNWTYTDPNFGTATETYETYVGLFGETSSASLKNIRMAGVCVLEGYGSSAGMIGGQISDSTISN 438
            TAD+++   S +  K IG T+  F G +DGN  TISN TYT+P F         Y+G+FG TS A++KN+ +  V +  G+ + AG + G   + T SN
Sbjct:   61 TADVNMSAYSGSQYKIIGNTSKPFTGTFDGNGHTISNLTYTNPIFNYY------YIGMFGYTSYATIKNLGLENVNI-NGHCTGAGALIGYQDNGTDSN 152
[Close]
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Match: A0A1G2YF79_9BACT (Glug domain-containing protein n=1 Tax=Planctomycetes bacterium GWF2_42_9 TaxID=1801958 RepID=A0A1G2YF79_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 5.880e-5
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:  145 TADIDLLNDSAN-IKPIGVTASKFKGEYDGNSFTISNWTYTDPNFGTATETYETYVGLFGETSSASLKNIRMAGVCVLEGYGSSAGMIGGQISDSTISN 438
            TAD+++   S +  K IG T+  F G +DGN  TISN TYT+P F         Y+G+FG TS A++KN+ +  V +  G+ + AG + G   + T SN
Sbjct:   61 TADVNMSAYSGSQYKIIGNTSKPFTGTFDGNGHTISNLTYTNPIFNYY------YIGMFGYTSYATIKNLGLENVNI-NGHCTGAGALIGYQDNGTDSN 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1351.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q6XM36_9PHYC5.440e-7440.35FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWE4_9PHYC4.110e-5936.74Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNC2_ESV1K4.630e-2041.08EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A3C0YPS8_9BACT4.120e-539.39Glug domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A1G2YF79_9BACT5.880e-539.39Glug domain-containing protein n=1 Tax=Planctomyce... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1351contigP-littoralis_Contig1351:17524..19492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1970
Hectar predicted targeting categoryother localisation
Exons1
Cds size1392
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.384532-CDS-P-littoralis_Contig1351:17523..189151680789624.384532-CDS-P-littoralis_Contig1351:17523..18915Pylaiella littoralis U1_48CDSP-littoralis_Contig1351 17524..18915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.3940613-UTR-P-littoralis_Contig1351:18915..194921680789624.3940613-UTR-P-littoralis_Contig1351:18915..19492Pylaiella littoralis U1_48UTRP-littoralis_Contig1351 18916..19492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1351.9.1prot_P-littoralis_Contig1351.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1351 17524..18915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1351.9.1

>prot_P-littoralis_Contig1351.9.1 ID=prot_P-littoralis_Contig1351.9.1|Name=mRNA_P-littoralis_Contig1351.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=464bp
MHDNTGFTSRNAGGVFRQMNQTTVTLVRNLATFPSGVNGTIAGGVVGYVF
FSSFEKGLNAMKGDVSGTKNVGGVVGYVRHNDASQSVHTLINSMQGNVSG
TGNSGYVGGVVGLLDHESNLYHTFLNYMAGDITCELTLTNRCGGLVGRSE
NDPNITTSINAMKGYVDNTVVGTVSSAGVASSASLAITVDTSFGLTYLVD
NHSTTSAVTGLPTDPDYYDLPFASLDGTDGNGVVYAWGVVYGNETALDLA
PRPLSIKASFGAVGGATAYRLTVQKASGDDDTVRTVHTGFTDLVKNIHSL
TPETEYIVRLYSTTDGTQYDLHLEDSATTTANSVANHQMLDFRNQSGAYD
LSEFDAGATRSVYEIANELFATGDAVVVSVGGRAMTSKFVKRGETASIVG
ESALLLPFESTSGNLSIGFAYALGQLVRDPHLRRERWHNRFRGGRVLPGG
LCRGRRPQDDVRGS
back to top

mRNA from alignment at P-littoralis_Contig1351:17524..19492-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1351.9.1 ID=mRNA_P-littoralis_Contig1351.9.1|Name=mRNA_P-littoralis_Contig1351.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1969bp|location=Sequence derived from alignment at P-littoralis_Contig1351:17524..19492- (Pylaiella littoralis U1_48)
TCGACCACCGTCACTCGGGTGTTGGACTCGAACTCCAAGTATGAGATCTC
CAAAGACCACCTGGTTCAGCTCATGAACAGTGGCGCCCTCTACACGAACG
CGGGATCCGCCCCTACCGACTTCATGAGCGCCGACGGCGTGCAGACCGCC
GATATTGATCTGTTGAACGACAGCGCGAACATTAAGCCGATCGGCGTGAC
CGCCTCTAAGTTCAAGGGCGAGTACGACGGAAACAGCTTCACCATCTCGA
ACTGGACGTACACGGACCCGAACTTCGGCACCGCCACCGAAACGTACGAA
ACTTACGTCGGTCTGTTCGGGGAGACATCCTCGGCAAGCCTGAAAAACAT
CCGCATGGCGGGGGTGTGTGTCCTCGAGGGATACGGTAGCAGCGCAGGCA
TGATCGGCGGGCAAATAAGCGATTCAACCATTTCCAACGTGGAGTGCGAC
TTCGCACGCACCCGGCTCTTCCGTGTCGCAGGGCACGGGATCCGGGACGT
GGCTGACAACGGGAGGTGTCGTGGGCCTTTCGAGGGGGGGTAGCGCGTGC
GGCATCATCCTCCGCGGCGAGCTCGAGATGCACGACAACACCGGTTTCAC
GAGCCGTAACGCCGGAGGGGTGTTCAGACAAATGAACCAGACCACCGTGA
CGTTGGTGAGGAACCTTGCGACTTTCCCGTCCGGAGTGAACGGAACCATC
GCTGGCGGGGTTGTTGGTTACGTGTTCTTTTCTTCTTTCGAGAAGGGCTT
GAACGCCATGAAAGGGGACGTGTCTGGTACAAAGAACGTTGGCGGCGTTG
TTGGTTACGTCAGGCACAACGACGCGTCCCAGTCGGTACACACGCTCATC
AACTCGATGCAAGGAAACGTTTCTGGGACAGGAAATTCTGGATATGTTGG
TGGGGTCGTGGGTCTCTTGGACCACGAGAGCAACTTGTACCACACCTTCT
TGAACTACATGGCCGGCGACATAACATGCGAGCTGACCCTCACAAACAGG
TGTGGAGGGCTGGTGGGCAGATCCGAGAATGATCCGAACATCACGACGTC
GATCAACGCCATGAAGGGGTACGTGGACAACACGGTCGTCGGGACGGTGT
CGTCGGCCGGAGTGGCGTCGTCCGCATCGTTGGCCATCACCGTGGATACC
AGCTTCGGGCTCACGTACCTCGTCGACAACCACAGCACCACGAGCGCGGT
CACCGGACTCCCAACAGACCCGGACTACTACGACCTCCCGTTCGCGAGCC
TGGACGGCACGGACGGCAACGGGGTGGTGTACGCGTGGGGGGTTGTGTAC
GGAAACGAGACGGCGCTGGACCTCGCACCGAGGCCGTTGAGCATAAAGGC
TTCTTTCGGGGCCGTGGGGGGCGCGACGGCCTACCGCCTCACCGTGCAGA
AGGCGAGCGGTGACGACGACACGGTGAGGACCGTGCACACGGGCTTCACC
GACCTCGTGAAAAACATCCACTCCCTCACGCCGGAGACGGAGTACATCGT
CCGGCTCTACTCGACGACGGACGGCACACAGTACGACCTCCACCTGGAGG
ACAGCGCCACCACGACGGCAAACTCTGTCGCGAACCACCAGATGTTGGAC
TTTAGGAACCAGAGCGGGGCGTACGATCTGTCCGAGTTCGACGCGGGAGC
GACGAGGTCGGTCTACGAGATTGCGAACGAACTCTTTGCGACGGGCGACG
CCGTGGTCGTTTCCGTCGGTGGGCGGGCGATGACATCAAAGTTCGTCAAG
CGGGGAGAGACGGCCTCCATCGTGGGAGAGAGCGCGCTCCTTCTCCCGTT
CGAATCGACCAGCGGGAACCTCTCAATCGGCTTCGCTTACGCCCTCGGAC
AACTCGTCCGTGACCCTCACCTTCGACGAGAACGTTGGCACAATCGGTTT
CGAGGGGGCAGAGTACTCCCCGGGGGACTTTGTCGTGGTAGACGGCCGCA
AGATGACGTTCGCGGAAGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1351:17524..19492-

>mRNA_P-littoralis_Contig1351.9.1 ID=mRNA_P-littoralis_Contig1351.9.1|Name=mRNA_P-littoralis_Contig1351.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1392bp|location=Sequence derived from alignment at P-littoralis_Contig1351:17524..19492- (Pylaiella littoralis U1_48)
ATGCACGACAACACCGGTTTCACGAGCCGTAACGCCGGAGGGGTGTTCAG
ACAAATGAACCAGACCACCGTGACGTTGGTGAGGAACCTTGCGACTTTCC
CGTCCGGAGTGAACGGAACCATCGCTGGCGGGGTTGTTGGTTACGTGTTC
TTTTCTTCTTTCGAGAAGGGCTTGAACGCCATGAAAGGGGACGTGTCTGG
TACAAAGAACGTTGGCGGCGTTGTTGGTTACGTCAGGCACAACGACGCGT
CCCAGTCGGTACACACGCTCATCAACTCGATGCAAGGAAACGTTTCTGGG
ACAGGAAATTCTGGATATGTTGGTGGGGTCGTGGGTCTCTTGGACCACGA
GAGCAACTTGTACCACACCTTCTTGAACTACATGGCCGGCGACATAACAT
GCGAGCTGACCCTCACAAACAGGTGTGGAGGGCTGGTGGGCAGATCCGAG
AATGATCCGAACATCACGACGTCGATCAACGCCATGAAGGGGTACGTGGA
CAACACGGTCGTCGGGACGGTGTCGTCGGCCGGAGTGGCGTCGTCCGCAT
CGTTGGCCATCACCGTGGATACCAGCTTCGGGCTCACGTACCTCGTCGAC
AACCACAGCACCACGAGCGCGGTCACCGGACTCCCAACAGACCCGGACTA
CTACGACCTCCCGTTCGCGAGCCTGGACGGCACGGACGGCAACGGGGTGG
TGTACGCGTGGGGGGTTGTGTACGGAAACGAGACGGCGCTGGACCTCGCA
CCGAGGCCGTTGAGCATAAAGGCTTCTTTCGGGGCCGTGGGGGGCGCGAC
GGCCTACCGCCTCACCGTGCAGAAGGCGAGCGGTGACGACGACACGGTGA
GGACCGTGCACACGGGCTTCACCGACCTCGTGAAAAACATCCACTCCCTC
ACGCCGGAGACGGAGTACATCGTCCGGCTCTACTCGACGACGGACGGCAC
ACAGTACGACCTCCACCTGGAGGACAGCGCCACCACGACGGCAAACTCTG
TCGCGAACCACCAGATGTTGGACTTTAGGAACCAGAGCGGGGCGTACGAT
CTGTCCGAGTTCGACGCGGGAGCGACGAGGTCGGTCTACGAGATTGCGAA
CGAACTCTTTGCGACGGGCGACGCCGTGGTCGTTTCCGTCGGTGGGCGGG
CGATGACATCAAAGTTCGTCAAGCGGGGAGAGACGGCCTCCATCGTGGGA
GAGAGCGCGCTCCTTCTCCCGTTCGAATCGACCAGCGGGAACCTCTCAAT
CGGCTTCGCTTACGCCCTCGGACAACTCGTCCGTGACCCTCACCTTCGAC
GAGAACGTTGGCACAATCGGTTTCGAGGGGGCAGAGTACTCCCCGGGGGA
CTTTGTCGTGGTAGACGGCCGCAAGATGACGTTCGCGGAAGT
back to top