mRNA_P-littoralis_Contig1350.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1350.7.1
Unique NamemRNA_P-littoralis_Contig1350.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: B5LWM8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM8_9PHYC)

HSP 1 Score: 201 bits (512), Expect = 6.090e-62
Identity = 92/165 (55.76%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    1 PQKEKVPKTTWKETVQCWKNGKNLPKIKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTK-LNGKTTPVSFYNLDKSATLVSPPDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYVSALKN 492
            P + +  + TW + V  W  G +LP++KSSVF ETSR  + GS  F QK  AA+R+LP++M GD+S FTK L G+T+PVSFYNL+++A LV+PPD+GKNF+H+  F+K+ + QER+ LWR+VA  + KK++KGE VYVSTHGT +PWLH+R++T PKYYVS LK+
Sbjct:  123 PSRPRKTRATWNDVVAKWYGGIDLPQVKSSVFWETSRISADGSSTFKQKQVAASRDLPMSMVGDSSAFTKYLYGQTSPVSFYNLNRTAVLVAPPDTGKNFAHLGLFYKNSTTQERKQLWRKVAEEIMKKIRKGESVYVSTHGTNIPWLHIRLDTVPKYYVSDLKH 287          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: Q8QN82_ESV1K (EsV-1-207 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN82_ESV1K)

HSP 1 Score: 173 bits (438), Expect = 8.220e-52
Identity = 83/154 (53.90%), Postives = 112/154 (72.73%), Query Frame = 1
Query:   28 TWKETVQCWKNGKNLPKIKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTK-LNGKTTPVSFYNLDKSATLVSPPDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYVSAL 486
            TW + ++ WK GK+LP IK SVF ETS A +GG   F QKT +AAR LP+T+  D ++F+  +  K TPV+F N      L+ PPD+GKNFSH+ATF+KH S  E+  LW++VAV +++KLK+GE VYVSTHGTGV WLHVR+ + P YYV+++
Sbjct:   52 TWNDVIKAWKAGKDLPDIKGSVFWETSVATAGGDSPFRQKTKSAARALPMTLPADPAVFSHHMKNKKTPVAF-NSFGGTLLIIPPDTGKNFSHLATFYKHGSDAEKRALWKKVAVELQRKLKRGETVYVSTHGTGVSWLHVRLASRPMYYVTSV 204          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: Q6XLX1_9PHYC (FirrV-1-C7 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX1_9PHYC)

HSP 1 Score: 164 bits (414), Expect = 4.630e-48
Identity = 80/155 (51.61%), Postives = 110/155 (70.97%), Query Frame = 1
Query:   22 KTTWKETVQCWKNGKNLPKIKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTK-LNGKTTPVSFYNLDKSATLVSPPD-SGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYVS 480
            K TWK+ ++ WK GK+LPKIK SVF ETS   +GG  E+ +KT +A  ELP+ M+ D+S F++ L+GK  PVSF N   + TLV PPD S + FSH+  F+K+ S  +   LW++VA+ +EK +KK + VYVSTHG G+PWLHVRI  +PKY+V+
Sbjct:   56 KKTWKDVLKSWKAGKDLPKIKGSVFWETSAIKNGGDVEYKEKTKSARSELPIHMRSDSSSFSEYLDGKLGPVSFNNSGGTCTLVCPPDGSDQEFSHLGQFYKNASKNQISALWKKVAMEIEKMMKKHKTVYVSTHGKGIPWLHVRICKSPKYFVT 210          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: D7FZG8_ECTSI (EsV-1-207 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG8_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.700e-46
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 1
Query:   61 GKNLPKIKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTK-LNGKTTPVSFYNLDKSATLVSPPDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYVSAL 486
            GK+LP IK SVF ETS A +GG   F QKT +AAR LP+T+  D ++F   +  K TPV+F N      LV PPD+GKNFSH+ATF+KH S  E+  LW++VAV +++KLK+GE VYVSTHGTGV WLHVR+ + P YYV+++
Sbjct:   80 GKDLPDIKGSVFWETSVATAGGDSPFRQKTKSAARALPMTLPADPALFAHHMKNKKTPVAF-NSFGGTLLVIPPDTGKNFSHLATFYKHSSDAEKRALWKKVAVELQRKLKRGETVYVSTHGTGVSWLHVRLASRPMYYVTSV 221          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: D7G321_ECTSI (EsV-1-207 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G321_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 8.390e-43
Identity = 77/146 (52.74%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   52 WKNGKNLPKIKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTK--LNGKTTPVSFYNLDK-SATLVSPPDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYVS 480
            WK G+ LP+IKSSVF E S A++GG   F  K  +AAR LP     D + F       +  PVSF +    S TLV PPDSGKNFSHI  F+KH ++ ER+ LWR+VA+ +EKKL +GE VYVSTHG GV W+HVR+  TP+Y V+
Sbjct:    2 WKEGRMLPEIKSSVFWECSPAYNGGDSLFHSKIKSAARVLPAKTPADRNPFAMHLRRARGVPVSFRSSSTPSTTLVIPPDSGKNFSHIGNFYKHSTLGERKALWRKVAIELEKKLARGETVYVSTHGGGVHWVHVRLSLTPRYNVT 147          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: A0A6T6WIS4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6WIS4_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 5.890e-16
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  208 KLNGKTTPVSFYNLDKSATLVSPPDSGKN---FSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYY 474
            KL G  +   F NL + A L+ P  S KN   F+H+A F ++    +++ LW +   + +  L++ + V+VSTHGTGV WLHVRI+T PKYY
Sbjct:   74 KLKGSNSVSVFPNLGRDAYLIVPAQSTKNAQTFAHLAAFVRNAPEDQKQALWEKTGKTFQTVLEQNKTVWVSTHGTGVYWLHVRIDTRPKYY 165          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: A0A6C0HMK7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HMK7_9ZZZZ)

HSP 1 Score: 79.7 bits (195), Expect = 9.080e-16
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   31 WKETVQCWKNGKNL--PK-IKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTKLNGKTTPVSFYNLDKSATLVSP-PDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYV-SALKN 492
            W + +  W+NG  L  PK +K      TS   + G+  F Q      +   +  K D   + + +     VSF NL K   LV P P  GKN++ +  F  +    ++++ W+ VA   +K + +   V++S HG GV + HVRI T PKYY  + LKN
Sbjct:    3 WSDVLTNWENGITLKYPKNVKGKFQWNTSVLKNDGNVAFTQTFRTNEKLAQIQNKKDFEEYIEKSQNKYVVSFPNLSKDTMLVIPMPIQGKNYATLRDFIDNAPKTQQQEFWKHVAKVAKKFMNEKGKVWISVHGLGVNYTHVRISTRPKYYFDNELKN 161          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: A0A6C0E4B2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E4B2_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 2.530e-15
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   31 WKETVQCWKNGKNL--PK-IKSSVFGETSRAHSGGSCEFIQKTTAAARELPVTMKGDNSIFTKLNGKTTPVSFYNLDKSATLVSP-PDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYY 474
            W E +  W+NG  L  PK +K      TS   + G   ++Q      +      K D   + K +     VSF NL+K   LV P P  GKN++ +  F  + S  ++++ W++VA   +K + +   V++S HG GV + HVRI T+PKYY
Sbjct:    3 WSEILANWENGIVLKYPKNVKGKFQWNTSVLKNDGKVAYLQTFRTNNKLAQRQNKKDFQEYFKNSQNKYVVSFPNLNKDTMLVVPMPVRGKNYATLRDFIDNASEIQQQEFWKKVAEVAKKFMNEKGKVWISVHGLGVDYTHVRISTSPKYY 154          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: A0A7Y1XFB4_9GAMM (Uncharacterized protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A7Y1XFB4_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 3.870e-14
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  163 RELPVTMKGDNSIFTK-LNGKTTPVS-FYNLDKSATLVSP--PDSGKNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYYV 477
            +++ +  + D++ F + L G T  V+ F NL + A L++P  P +G +++H+A F ++    + E LW+QV  +V  +L   + ++++  GTGVPWLHVRI+T PKYYV
Sbjct:   79 KDISLERRADSAAFEEHLTGSTAAVAAFPNLGRDAFLLAPTDPGNGADYAHLAAFLRNAPGPQIEALWQQVGQAVSLRLNV-KPIWLNCAGTGVPWLHVRIDTRPKYYV 186          
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Match: UPI00034D4F44 (hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034D4F44)

HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13
Identity = 37/119 (31.09%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  133 EFIQKTTAAARELPVTMKGDNSIFTKLNGKTTP---VSFYNLDKSATLVSPPDSG--KNFSHIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVRIETTPKYY 474
            EF+        ++P     D++ F     K  P   ++F NL K A L+ P   G   ++ H+A+F +H   +++ +LW++V   ++K L     ++++T G GVPWLH+R+++ PKYY
Sbjct:   73 EFVVLDNPLLNKIP-----DSTAFNNYLVKNAPESIITFANLGKDALLIVPSQQGAKSSYGHLASFIRHAPEEQKHNLWQKVGAVMQKNLSDAP-IWLNTAGGGVPWLHIRLDSRPKYY 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1350.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWM8_9PHYC6.090e-6255.76Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QN82_ESV1K8.220e-5253.90EsV-1-207 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q6XLX1_9PHYC4.630e-4851.61FirrV-1-C7 n=1 Tax=Feldmannia irregularis virus a ... [more]
D7FZG8_ECTSI2.700e-4655.94EsV-1-207 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G321_ECTSI8.390e-4352.74EsV-1-207 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6T6WIS4_9EUKA5.890e-1642.39Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6C0HMK7_9ZZZZ9.080e-1632.08Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0E4B2_9ZZZZ2.530e-1532.89Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7Y1XFB4_9GAMM3.870e-1437.61Uncharacterized protein n=1 Tax=Pseudomonadales ba... [more]
UPI00034D4F442.010e-1331.09hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1350contigP-littoralis_Contig1350:16019..16516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog118161.KB235922_gene5161
Model size498
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.29e-14
EggNOG OGs2B3PJ@1|root,31WD1@2|Bacteria,1G6XS@1117|Cyanobacteria,3VJZ6@52604|Pleurocapsales
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.1030493-CDS-P-littoralis_Contig1350:16018..165161680789624.1030493-CDS-P-littoralis_Contig1350:16018..16516Pylaiella littoralis U1_48CDSP-littoralis_Contig1350 16019..16516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1350.7.1prot_P-littoralis_Contig1350.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1350 16019..16516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1350.7.1

>prot_P-littoralis_Contig1350.7.1 ID=prot_P-littoralis_Contig1350.7.1|Name=mRNA_P-littoralis_Contig1350.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
PQKEKVPKTTWKETVQCWKNGKNLPKIKSSVFGETSRAHSGGSCEFIQKT
TAAARELPVTMKGDNSIFTKLNGKTTPVSFYNLDKSATLVSPPDSGKNFS
HIATFHKHCSVQEREDLWRQVAVSVEKKLKKGEGVYVSTHGTGVPWLHVR
IETTPKYYVSALKNT*
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mRNA from alignment at P-littoralis_Contig1350:16019..16516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1350.7.1 ID=mRNA_P-littoralis_Contig1350.7.1|Name=mRNA_P-littoralis_Contig1350.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig1350:16019..16516+ (Pylaiella littoralis U1_48)
CCTCAAAAAGAAAAAGTACCTAAAACGACTTGGAAAGAGACGGTTCAGTG CTGGAAAAACGGAAAGAACCTCCCCAAAATAAAATCAAGTGTATTCGGGG AGACTTCAAGAGCGCATTCCGGTGGTTCATGTGAGTTTATCCAGAAAACC ACGGCTGCCGCCAGAGAGCTTCCAGTGACTATGAAGGGTGACAACTCTAT TTTCACAAAATTGAATGGCAAGACAACGCCCGTCTCGTTCTACAATTTGG ACAAATCGGCTACACTAGTTTCGCCGCCCGACAGCGGGAAGAACTTCTCT CACATCGCCACGTTTCACAAACATTGTTCCGTACAGGAAAGAGAGGATCT GTGGAGGCAAGTCGCTGTGAGCGTGGAAAAGAAGCTAAAAAAAGGCGAAG GTGTGTACGTGTCGACTCACGGAACGGGCGTACCCTGGTTGCACGTGCGG ATAGAGACAACGCCGAAATATTACGTTTCTGCCCTGAAGAACACATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1350:16019..16516+

>mRNA_P-littoralis_Contig1350.7.1 ID=mRNA_P-littoralis_Contig1350.7.1|Name=mRNA_P-littoralis_Contig1350.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig1350:16019..16516+ (Pylaiella littoralis U1_48)
CCTCAAAAAGAAAAAGTACCTAAAACGACTTGGAAAGAGACGGTTCAGTG
CTGGAAAAACGGAAAGAACCTCCCCAAAATAAAATCAAGTGTATTCGGGG
AGACTTCAAGAGCGCATTCCGGTGGTTCATGTGAGTTTATCCAGAAAACC
ACGGCTGCCGCCAGAGAGCTTCCAGTGACTATGAAGGGTGACAACTCTAT
TTTCACAAAATTGAATGGCAAGACAACGCCCGTCTCGTTCTACAATTTGG
ACAAATCGGCTACACTAGTTTCGCCGCCCGACAGCGGGAAGAACTTCTCT
CACATCGCCACGTTTCACAAACATTGTTCCGTACAGGAAAGAGAGGATCT
GTGGAGGCAAGTCGCTGTGAGCGTGGAAAAGAAGCTAAAAAAAGGCGAAG
GTGTGTACGTGTCGACTCACGGAACGGGCGTACCCTGGTTGCACGTGCGG
ATAGAGACAACGCCGAAATATTACGTTTCTGCCCTGAAGAACACATGA
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