mRNA_P-littoralis_Contig135.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig135.126.1
Unique Name	mRNA_P-littoralis_Contig135.126.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 7.400e-54
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +L+DPA I +RWARWFH LLNTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQQ KD +IKVL+K
Sbjct:   10 RSFTSQNIKDEDGKVLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVPQQWKDTTIKVLFK 140

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.780e-53
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH LLNTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQQ KDA+IKVL+K
Sbjct:   75 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFK 205

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5L9V0_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V0_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.030e-53
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T R++ D    +LRDP  I +RWARWFH L NTKSPT+D    DKI+ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++W +G VPQQ KDA+IKVL+K
Sbjct:    8 RSFTSRNIKDEDGKVLRDPTFIRQRWARWFHKLFNTKSPTIDLHAADKIKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWLAGDVPQQWKDATIKVLFK 138

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.530e-53
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 1

Query:   64 LLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            +LRDP  I +RWARWFH LLNTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQQ KDA+IKVL+K
Sbjct:   79 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFK 195

[Close]

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JTX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX5_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.310e-52
Identity = 82/131 (62.60%), Postives = 102/131 (77.86%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH LLNTKSPT+D    DK++ WP CVP DDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQ  KDA+IKVL+K
Sbjct:   23 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHNLLNTKSPTIDLHAADKVKRWPTCVPPDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQWWKDATIKVLFK 153

[Close]

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.670e-52
Identity = 83/131 (63.36%), Postives = 101/131 (77.10%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH LLNTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVGL+DLPAELIKLFL+ DQ LLR F+  +++ WQ+G  PQQ KDA+IKVL+K
Sbjct:   53 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKLFLDGDQGLLRAFHATVVDAWQTGDAPQQWKDATIKVLFK 183

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JHD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD4_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 7.010e-52
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH LLNT+SPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+  ++++WQ+  +PQQ KDASIK+L+K
Sbjct:    8 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTESPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHATVVDVWQTRDIPQQWKDASIKMLFK 138

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BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JLW1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW1_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.370e-52
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH L+NTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG +DLPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQQ KDA+IKVL+K
Sbjct:  105 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLVNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFK 235

[Close]

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 7.990e-52
Identity = 84/131 (64.12%), Postives = 106/131 (80.92%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP L  +RWARWFH LLNTKSPT+D    D+++ WP CVPLDDIP LFEVEEA+RGMANRKAVG +DLPAELIKLFL+ D+ LLR+F+ I++++WQ+G VPQQ KDA+IKVL+K
Sbjct:  306 RPFTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFK 436

[Close]

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Match: A0A6H5JGC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC2_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.470e-51
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1

Query:   22 RQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDPRVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLFLERDQVLLRQFYRIIINIWQSGRVPQQ*KDASIKVLYK 414
            R  T +++ D    +LRDP  I +RWARWFH LLNTKSPT+D    DK++ WP CVPLDDIP L EVEEA+R MANRKAVG ++LPAELIKLFL+ DQ LLR+F+ I++++WQ+G VPQQ KDA+IKVL+K
Sbjct:  225 RSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDNLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFK 355

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig135.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQE0_9PHAE	7.400e-54	63.36	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L012_9PHAE	1.780e-53	64.12	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L9V0_9PHAE	2.030e-53	64.12	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]
A0A6H5K0F8_9PHAE	5.530e-53	69.23	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JTX5_9PHAE	2.310e-52	62.60	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JVM9_9PHAE	2.670e-52	63.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHD4_9PHAE	7.010e-52	61.07	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JLW1_9PHAE	7.370e-52	63.36	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JY74_9PHAE	7.990e-52	64.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGC2_9PHAE	1.470e-51	63.36	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig135	contig	P-littoralis_Contig135:494002..494443 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	13735.ENSPSIP00000000394
PFAMs	Exo_endo_phos_2,RVT_1
Model size	442
Max annot lvl	33208\|Metazoa
Hectar predicted targeting category	other localisation
Exons	1
Evalue	4.9e-12
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BHR3@33208\|Metazoa,3CUIP@33213\|Bilateria,48HP9@7711\|Chordata,49EDH@7742\|Vertebrata
Description	Ribonuclease H protein
Cds size	384
COG category	S

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789623.899861-UTR-P-littoralis_Contig135:494001..494059	1680789623.899861-UTR-P-littoralis_Contig135:494001..494059	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig135 494002..494059 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789623.9152753-CDS-P-littoralis_Contig135:494059..494443	1680789623.9152753-CDS-P-littoralis_Contig135:494059..494443	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig135 494060..494443 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig135.126.1	prot_P-littoralis_Contig135.126.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig135 494060..494443 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig135:494002..494443-
coding sequence from alignment at P-littoralis_Contig135:494002..494443-

protein sequence of mRNA_P-littoralis_Contig135.126.1

>prot_P-littoralis_Contig135.126.1 ID=prot_P-littoralis_Contig135.126.1|Name=mRNA_P-littoralis_Contig135.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MNSKQFVRQGTRRSLVDCFSILLRDPALILERWARWFHALLNTKSPTLDP
RVVDKIEPWPQCVPLDDIPLLFEVEEAIRGMANRKAVGLNDLPAELIKLF
LERDQVLLRQFYRIIINIWQSGRVPQQ*

mRNA from alignment at P-littoralis_Contig135:494002..494443-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig135.126.1 ID=mRNA_P-littoralis_Contig135.126.1|Name=mRNA_P-littoralis_Contig135.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig135:494002..494443- (Pylaiella littoralis U1_48)
ATGAATTCGAAGCAGTTCGTTCGACAAGGAACACGTCGATCGCTCGTGGA
CTGCTTCTCAATACTACTTCGGGACCCCGCACTTATCCTCGAGCGGTGGG
CCAGGTGGTTCCATGCTCTGCTCAACACCAAGTCACCGACCCTCGATCCG
AGAGTGGTGGACAAGATCGAGCCCTGGCCTCAGTGCGTACCGCTTGATGA
CATCCCTTTGCTATTTGAGGTTGAGGAAGCAATCCGGGGAATGGCCAACA
GGAAAGCTGTGGGCCTGAACGATCTACCGGCGGAGCTCATCAAGCTCTTC
CTTGAAAGAGACCAAGTCCTCCTACGGCAGTTCTACAGGATCATCATCAA
CATCTGGCAATCGGGAAGGGTGCCACAGCAGTGAAAAGATGCTTCGATCA
AGGTGCTGTACAAGACGAACAAGCGGAATGCGGCAATTACCG

Coding sequence (CDS) from alignment at P-littoralis_Contig135:494002..494443-

>mRNA_P-littoralis_Contig135.126.1 ID=mRNA_P-littoralis_Contig135.126.1|Name=mRNA_P-littoralis_Contig135.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig135:494002..494443- (Pylaiella littoralis U1_48)
ATGAATTCGAAGCAGTTCGTTCGACAAGGAACACGTCGATCGCTCGTGGA
CTGCTTCTCAATACTACTTCGGGACCCCGCACTTATCCTCGAGCGGTGGG
CCAGGTGGTTCCATGCTCTGCTCAACACCAAGTCACCGACCCTCGATCCG
AGAGTGGTGGACAAGATCGAGCCCTGGCCTCAGTGCGTACCGCTTGATGA
CATCCCTTTGCTATTTGAGGTTGAGGAAGCAATCCGGGGAATGGCCAACA
GGAAAGCTGTGGGCCTGAACGATCTACCGGCGGAGCTCATCAAGCTCTTC
CTTGAAAGAGACCAAGTCCTCCTACGGCAGTTCTACAGGATCATCATCAA
CATCTGGCAATCGGGAAGGGTGCCACAGCAGTGA